Literature DB >> 21582181

4-(4-Carboxy-benz-yl)-1-methyl-piperazin-1-ium picrate.

Hongqi Li, Q N M Hakim Al-Arique, H S Yathirajan, B Narayana, A R Ramesha.   

Abstract

The title compound, C(13)H(19)N(2)O(2) (+)·C(6)H(2)N(3)O(7) (-), is a salt obtained by cocrystallization of 4-[(4-methyl-piperazin-1-yl)meth-yl]benzoic acid and picric acid. The cations adopt an 'L-shaped' conformation and are linked into chains along [010] by O-H⋯N hydrogen bonds. The NH group of each piperazinium ring forms a hydrogen bond to the phenolate O atom of a picrate anion, and the picrate anions form face-to-face contacts with an inter-planar separation of 3.023 (1) Å.

Entities:  

Year:  2009        PMID: 21582181      PMCID: PMC2968640          DOI: 10.1107/S1600536809004474

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Druker et al. (2001 ▶). For related structures, see: Swamy et al. (2007 ▶); Bindya et al. (2007 ▶); Sarojini et al. (2007 ▶); Wang & Jia (2008 ▶).

Experimental

Crystal data

C13H19N2O2 +·C6H2N3O7 − M = 463.41 Triclinic, a = 7.3020 (12) Å b = 9.5993 (16) Å c = 15.131 (3) Å α = 86.448 (2)° β = 79.145 (2)° γ = 79.950 (2)° V = 1025.2 (3) Å3 Z = 2 Mo Kα radiation μ = 0.12 mm−1 T = 296 K 0.30 × 0.20 × 0.20 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.965, T max = 0.976 5373 measured reflections 3565 independent reflections 2745 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.104 S = 1.06 3565 reflections 305 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.18 e Å−3 Δρmin = −0.17 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809004474/bi2341sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809004474/bi2341Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H19N2O2+·C6H2N3O7Z = 2
Mr = 463.41F(000) = 484
Triclinic, P1Dx = 1.501 Mg m3
Hall symbol: -P 1Melting point = 510–504 K
a = 7.3020 (12) ÅMo Kα radiation, λ = 0.71073 Å
b = 9.5993 (16) ÅCell parameters from 1962 reflections
c = 15.131 (3) Åθ = 2.5–26.9°
α = 86.448 (2)°µ = 0.12 mm1
β = 79.145 (2)°T = 296 K
γ = 79.950 (2)°Block, colourless
V = 1025.2 (3) Å30.30 × 0.20 × 0.20 mm
Bruker SMART CCD diffractometer3565 independent reflections
Radiation source: fine-focus sealed tube2745 reflections with I > 2σ(I)
graphiteRint = 0.016
φ and ω scansθmax = 25.0°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 2004)h = −8→6
Tmin = 0.965, Tmax = 0.976k = −11→9
5373 measured reflectionsl = −18→18
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.040H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.104w = 1/[σ2(Fo2) + (0.0447P)2 + 0.2218P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
3565 reflectionsΔρmax = 0.18 e Å3
305 parametersΔρmin = −0.17 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.023 (2)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.5333 (3)1.0778 (2)0.14228 (14)0.0426 (5)
C20.6431 (3)1.0691 (2)0.05175 (13)0.0438 (5)
C30.7751 (3)0.9547 (2)0.02127 (13)0.0430 (5)
H30.83950.9546−0.03790.052*
C40.8126 (3)0.8398 (2)0.07793 (12)0.0379 (4)
C50.7175 (2)0.83776 (19)0.16598 (12)0.0359 (4)
H50.74220.75950.20390.043*
C60.5870 (3)0.9521 (2)0.19627 (12)0.0372 (4)
C70.1636 (3)1.33630 (19)0.60024 (12)0.0366 (4)
C80.1280 (2)1.18702 (18)0.60753 (11)0.0320 (4)
C90.2178 (3)1.09572 (19)0.53938 (12)0.0380 (4)
H90.29431.12920.48920.046*
C100.1949 (3)0.95535 (19)0.54527 (12)0.0391 (4)
H100.25570.89540.49890.047*
C110.0818 (2)0.90303 (18)0.61993 (12)0.0349 (4)
C12−0.0108 (2)0.99528 (18)0.68722 (12)0.0361 (4)
H12−0.08970.96220.73670.043*
C130.0123 (2)1.13606 (18)0.68187 (12)0.0348 (4)
H13−0.04941.19640.72790.042*
C140.0608 (3)0.74891 (19)0.62770 (13)0.0413 (5)
H14A−0.06400.74130.66160.050*
H14B0.06770.71560.56770.050*
C150.3984 (3)0.6541 (2)0.62183 (12)0.0399 (5)
H15A0.42810.74880.62080.048*
H15B0.40630.62820.56010.048*
C160.5410 (3)0.5522 (2)0.66450 (12)0.0415 (5)
H16A0.51960.45620.65980.050*
H16B0.66740.55910.63240.050*
C170.3292 (3)0.5816 (2)0.80965 (12)0.0402 (5)
H17A0.31890.60460.87210.048*
H17B0.29850.48750.80830.048*
C180.1914 (3)0.68674 (19)0.76667 (12)0.0375 (4)
H18A0.06390.68460.79910.045*
H18B0.21900.78130.77010.045*
C190.6653 (3)0.4834 (2)0.80485 (15)0.0598 (6)
H19A0.65950.51210.86510.090*
H19B0.79030.48410.77100.090*
H19C0.63550.38960.80650.090*
N10.6141 (3)1.1856 (2)−0.01420 (15)0.0587 (5)
N20.9524 (2)0.71935 (19)0.04516 (11)0.0471 (4)
N30.4925 (2)0.9427 (2)0.28970 (11)0.0469 (4)
N40.2038 (2)0.65332 (14)0.67160 (9)0.0340 (4)
N50.5264 (2)0.58329 (17)0.76126 (10)0.0375 (4)
O10.4059 (2)1.17657 (15)0.17135 (11)0.0614 (4)
O20.5114 (3)1.2956 (2)0.00975 (14)0.0921 (6)
O30.6952 (3)1.16659 (19)−0.09220 (12)0.0799 (6)
O41.0379 (2)0.72647 (18)−0.03240 (10)0.0680 (5)
O50.9804 (2)0.61680 (16)0.09632 (11)0.0649 (5)
O60.4639 (2)0.82634 (18)0.32167 (10)0.0633 (4)
O70.4470 (2)1.05126 (19)0.33248 (10)0.0707 (5)
O80.1067 (2)1.40458 (13)0.67570 (8)0.0445 (4)
H80.13971.48250.66910.067*
O90.2400 (2)1.38891 (15)0.53152 (9)0.0605 (4)
H5A0.551 (3)0.669 (2)0.7674 (13)0.045 (6)*
U11U22U33U12U13U23
C10.0386 (11)0.0359 (11)0.0586 (13)−0.0106 (8)−0.0166 (9)−0.0054 (9)
C20.0462 (12)0.0407 (11)0.0508 (12)−0.0163 (9)−0.0195 (10)0.0092 (9)
C30.0449 (11)0.0537 (13)0.0350 (10)−0.0208 (10)−0.0079 (9)0.0021 (9)
C40.0359 (10)0.0421 (11)0.0355 (10)−0.0087 (8)−0.0032 (8)−0.0036 (8)
C50.0377 (10)0.0382 (10)0.0345 (10)−0.0097 (8)−0.0102 (8)−0.0007 (8)
C60.0368 (10)0.0426 (11)0.0348 (10)−0.0100 (8)−0.0079 (8)−0.0059 (8)
C70.0393 (10)0.0345 (10)0.0353 (10)−0.0079 (8)−0.0036 (8)−0.0002 (8)
C80.0339 (9)0.0298 (9)0.0334 (9)−0.0060 (7)−0.0086 (8)−0.0001 (7)
C90.0457 (11)0.0366 (10)0.0307 (9)−0.0071 (8)−0.0045 (8)0.0000 (8)
C100.0491 (11)0.0327 (10)0.0349 (10)−0.0028 (8)−0.0081 (9)−0.0067 (8)
C110.0360 (10)0.0296 (10)0.0423 (10)−0.0070 (7)−0.0141 (8)0.0004 (8)
C120.0311 (10)0.0339 (10)0.0415 (10)−0.0064 (7)−0.0026 (8)0.0042 (8)
C130.0327 (9)0.0311 (10)0.0378 (10)−0.0029 (7)−0.0008 (8)−0.0027 (8)
C140.0461 (11)0.0317 (10)0.0503 (11)−0.0104 (8)−0.0157 (9)−0.0015 (8)
C150.0448 (11)0.0371 (10)0.0347 (10)−0.0087 (8)0.0013 (8)0.0020 (8)
C160.0423 (11)0.0371 (11)0.0385 (10)−0.0016 (8)0.0047 (8)−0.0018 (8)
C170.0392 (10)0.0418 (11)0.0348 (10)−0.0040 (8)0.0030 (8)−0.0016 (8)
C180.0349 (10)0.0371 (10)0.0380 (10)−0.0026 (8)−0.0013 (8)−0.0070 (8)
C190.0513 (13)0.0579 (14)0.0596 (14)0.0144 (11)−0.0087 (11)0.0092 (11)
N10.0678 (13)0.0507 (12)0.0688 (14)−0.0265 (10)−0.0316 (11)0.0184 (10)
N20.0420 (10)0.0529 (11)0.0439 (10)−0.0091 (8)0.0012 (8)−0.0076 (8)
N30.0368 (9)0.0614 (12)0.0420 (9)−0.0061 (8)−0.0046 (7)−0.0111 (9)
N40.0385 (8)0.0289 (8)0.0338 (8)−0.0064 (6)−0.0031 (6)−0.0028 (6)
N50.0363 (9)0.0317 (9)0.0407 (9)−0.0006 (7)−0.0023 (7)−0.0001 (7)
O10.0513 (9)0.0413 (9)0.0904 (12)−0.0006 (7)−0.0138 (8)−0.0095 (8)
O20.1085 (16)0.0526 (11)0.1104 (16)0.0045 (11)−0.0328 (12)0.0230 (11)
O30.1177 (16)0.0729 (12)0.0587 (11)−0.0338 (11)−0.0321 (11)0.0242 (9)
O40.0656 (10)0.0825 (12)0.0461 (9)−0.0069 (9)0.0138 (8)−0.0138 (8)
O50.0638 (10)0.0524 (10)0.0677 (10)0.0059 (8)−0.0006 (8)0.0038 (8)
O60.0623 (10)0.0701 (11)0.0503 (9)−0.0117 (8)0.0055 (7)0.0075 (8)
O70.0693 (11)0.0822 (12)0.0591 (10)−0.0126 (9)0.0035 (8)−0.0371 (9)
O80.0599 (9)0.0308 (7)0.0409 (7)−0.0161 (6)0.0051 (6)−0.0049 (6)
O90.0948 (12)0.0441 (9)0.0388 (8)−0.0271 (8)0.0105 (8)0.0014 (6)
C1—O11.244 (2)C14—H14B0.970
C1—C21.450 (3)C15—N41.479 (2)
C1—C61.453 (3)C15—C161.509 (3)
C2—C31.369 (3)C15—H15A0.970
C2—N11.466 (3)C15—H15B0.970
C3—C41.375 (3)C16—N51.493 (2)
C3—H30.930C16—H16A0.970
C4—C51.382 (2)C16—H16B0.970
C4—N21.447 (2)C17—N51.490 (2)
C5—C61.362 (2)C17—C181.505 (2)
C5—H50.930C17—H17A0.970
C6—N31.456 (2)C17—H17B0.970
C7—O91.209 (2)C18—N41.476 (2)
C7—O81.313 (2)C18—H18A0.970
C7—C81.494 (2)C18—H18B0.970
C8—C91.385 (2)C19—N51.489 (2)
C8—C131.391 (2)C19—H19A0.960
C9—C101.382 (3)C19—H19B0.960
C9—H90.930C19—H19C0.960
C10—C111.390 (3)N1—O21.215 (3)
C10—H100.930N1—O31.226 (3)
C11—C121.386 (2)N2—O41.225 (2)
C11—C141.509 (2)N2—O51.227 (2)
C12—C131.386 (2)N3—O71.223 (2)
C12—H120.930N3—O61.226 (2)
C13—H130.930N5—H5A0.89 (2)
C14—N41.491 (2)O8—H80.820
C14—H14A0.970
O1—C1—C2125.88 (19)C16—C15—H15A109.3
O1—C1—C6122.99 (19)N4—C15—H15B109.3
C2—C1—C6111.10 (16)C16—C15—H15B109.3
C3—C2—C1123.83 (18)H15A—C15—H15B108.0
C3—C2—N1115.70 (19)N5—C16—C15111.14 (14)
C1—C2—N1120.46 (19)N5—C16—H16A109.4
C2—C3—C4120.19 (18)C15—C16—H16A109.4
C2—C3—H3119.9N5—C16—H16B109.4
C4—C3—H3119.9C15—C16—H16B109.4
C3—C4—C5120.72 (17)H16A—C16—H16B108.0
C3—C4—N2119.81 (17)N5—C17—C18110.62 (15)
C5—C4—N2119.47 (17)N5—C17—H17A109.5
C6—C5—C4118.97 (17)C18—C17—H17A109.5
C6—C5—H5120.5N5—C17—H17B109.5
C4—C5—H5120.5C18—C17—H17B109.5
C5—C6—C1125.15 (17)H17A—C17—H17B108.1
C5—C6—N3115.99 (17)N4—C18—C17110.48 (14)
C1—C6—N3118.84 (16)N4—C18—H18A109.6
O9—C7—O8123.05 (17)C17—C18—H18A109.6
O9—C7—C8123.12 (16)N4—C18—H18B109.6
O8—C7—C8113.82 (15)C17—C18—H18B109.6
C9—C8—C13119.15 (16)H18A—C18—H18B108.1
C9—C8—C7118.80 (16)N5—C19—H19A109.5
C13—C8—C7122.01 (15)N5—C19—H19B109.5
C10—C9—C8120.65 (17)H19A—C19—H19B109.5
C10—C9—H9119.7N5—C19—H19C109.5
C8—C9—H9119.7H19A—C19—H19C109.5
C9—C10—C11120.59 (16)H19B—C19—H19C109.5
C9—C10—H10119.7O2—N1—O3122.7 (2)
C11—C10—H10119.7O2—N1—C2119.6 (2)
C12—C11—C10118.64 (16)O3—N1—C2117.7 (2)
C12—C11—C14120.67 (16)O4—N2—O5123.64 (17)
C10—C11—C14120.69 (16)O4—N2—C4117.71 (17)
C13—C12—C11121.00 (17)O5—N2—C4118.64 (16)
C13—C12—H12119.5O7—N3—O6123.34 (18)
C11—C12—H12119.5O7—N3—C6118.32 (18)
C12—C13—C8119.95 (16)O6—N3—C6118.34 (17)
C12—C13—H13120.0C18—N4—C15110.02 (14)
C8—C13—H13120.0C18—N4—C14112.50 (13)
N4—C14—C11115.44 (15)C15—N4—C14111.92 (14)
N4—C14—H14A108.4C17—N5—C19111.33 (15)
C11—C14—H14A108.4C17—N5—C16109.59 (15)
N4—C14—H14B108.4C19—N5—C16112.03 (15)
C11—C14—H14B108.4C17—N5—H5A106.5 (13)
H14A—C14—H14B107.5C19—N5—H5A105.9 (13)
N4—C15—C16111.45 (14)C16—N5—H5A111.3 (13)
N4—C15—H15A109.3C7—O8—H8109.5
O1—C1—C2—C3−176.28 (19)C9—C8—C13—C120.4 (3)
C6—C1—C2—C32.0 (3)C7—C8—C13—C12−177.54 (16)
O1—C1—C2—N12.5 (3)C12—C11—C14—N4−90.9 (2)
C6—C1—C2—N1−179.22 (16)C10—C11—C14—N488.9 (2)
C1—C2—C3—C4−1.1 (3)N4—C15—C16—N5−55.9 (2)
N1—C2—C3—C4−179.94 (17)N5—C17—C18—N459.5 (2)
C2—C3—C4—C50.3 (3)C3—C2—N1—O2−173.7 (2)
C2—C3—C4—N2−179.94 (17)C1—C2—N1—O27.4 (3)
C3—C4—C5—C6−0.7 (3)C3—C2—N1—O36.7 (3)
N2—C4—C5—C6179.59 (16)C1—C2—N1—O3−172.20 (18)
C4—C5—C6—C11.9 (3)C3—C4—N2—O42.3 (3)
C4—C5—C6—N3−179.92 (16)C5—C4—N2—O4−177.91 (17)
O1—C1—C6—C5175.93 (18)C3—C4—N2—O5−178.37 (18)
C2—C1—C6—C5−2.4 (3)C5—C4—N2—O51.4 (3)
O1—C1—C6—N3−2.2 (3)C5—C6—N3—O7146.71 (18)
C2—C1—C6—N3179.41 (16)C1—C6—N3—O7−35.0 (2)
O9—C7—C8—C913.3 (3)C5—C6—N3—O6−32.8 (2)
O8—C7—C8—C9−165.86 (16)C1—C6—N3—O6145.57 (18)
O9—C7—C8—C13−168.83 (19)C17—C18—N4—C15−58.31 (19)
O8—C7—C8—C1312.1 (2)C17—C18—N4—C14176.17 (15)
C13—C8—C9—C10−0.7 (3)C16—C15—N4—C1856.68 (19)
C7—C8—C9—C10177.30 (16)C16—C15—N4—C14−177.48 (15)
C8—C9—C10—C11−0.3 (3)C11—C14—N4—C1864.0 (2)
C9—C10—C11—C121.5 (3)C11—C14—N4—C15−60.5 (2)
C9—C10—C11—C14−178.33 (16)C18—C17—N5—C19178.02 (17)
C10—C11—C12—C13−1.8 (3)C18—C17—N5—C16−57.47 (19)
C14—C11—C12—C13178.01 (16)C15—C16—N5—C1755.6 (2)
C11—C12—C13—C80.9 (3)C15—C16—N5—C19179.69 (17)
D—H···AD—HH···AD···AD—H···A
O8—H8···N4i0.821.792.6006 (19)172
N5—H5A···O1ii0.89 (2)1.89 (2)2.734 (2)156.9 (18)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O8—H8⋯N4i0.821.792.6006 (19)172
N5—H5A⋯O1ii0.89 (2)1.89 (2)2.734 (2)156.9 (18)

Symmetry codes: (i) ; (ii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Activity of a specific inhibitor of the BCR-ABL tyrosine kinase in the blast crisis of chronic myeloid leukemia and acute lymphoblastic leukemia with the Philadelphia chromosome.

Authors:  B J Druker; C L Sawyers; H Kantarjian; D J Resta; S F Reese; J M Ford; R Capdeville; M Talpaz
Journal:  N Engl J Med       Date:  2001-04-05       Impact factor: 91.245

3.  Amitriptylinium picrate: conformational disorder.

Authors:  S Bindya; Wing-Tak Wong; M A Ashok; H S Yathirajan; R S Rathore
Journal:  Acta Crystallogr C       Date:  2007-08-17       Impact factor: 1.172

4.  Three-dimensional network in piper-azine-1,4-diium-picrate-piperazine (1/2/1).

Authors:  Zhong-Long Wang; Li-Hui Jia
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-03-05
  4 in total

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