Literature DB >> 21589077

Tetra-imidazolium piperazinediium bis-(benzene-1,3,5-tricarboxyl-ate) dihydrate.

Ping-Xian Liu, Zhi-An Li, Dao-Yong Chen.   

Abstract

During the crystallization of the title compound, 4C(3)H(5)N(2) (+)·C(4)H(12)N(2) (+)·2C(9)H(3)O(6) (3-)·2H(2)O, the acidic protons were transferred to the imidazole and piperazine N atoms, forming the final 4:1:2:2 hydrated mixed salt. The mean planes of the three carboxyl-ate groups in the anion are twisted with respect to the the central benzene ring, making dihedral angles of 13.5 (1), 14.5 (1) and 16.9 (1)°. In the crystal, the component ions are linked into a three-dimensional network by a combination of inter-molecular N-H⋯O, O-H⋯O and weak C-H⋯O hydrogen bonds. Further stabilization is provided by π-π stacking inter-actions with centroid-centroid distances of 3.393 (2) Å and weak C=O⋯π inter-actions [O-centroid = 3.363 (2) Å].

Entities:  

Year:  2010        PMID: 21589077      PMCID: PMC3009064          DOI: 10.1107/S1600536810041310

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of multi-component piperazine compounds, see: Jacobs et al. (2009 ▶); Oswald et al. (2002 ▶); Wang & Jia (2008 ▶). For examples of compounds containing weak anion–π inter­actions, see: Schottel et al. (2008 ▶); Gao et al. (2009 ▶).

Experimental

Crystal data

4C3H5N2C4H12N2 +·2C9H3O6 3−·2H2O M = 814.78 Triclinic, a = 7.1548 (4) Å b = 9.9424 (5) Å c = 13.3567 (7) Å α = 96.895 (1)° β = 95.201 (1)° γ = 101.439 (2)° V = 918.11 (8) Å3 Z = 1 Mo Kα radiation μ = 0.12 mm−1 T = 298 K 0.20 × 0.13 × 0.10 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.967, T max = 0.989 10341 measured reflections 3925 independent reflections 2757 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.122 S = 1.04 3925 reflections 286 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.31 e Å−3 Δρmin = −0.19 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT-Plus (Bruker, 2001 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810041310/lh5148sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810041310/lh5148Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
4C3H5N2+·C4H12N2+·2C9H3O63·2H2OZ = 1
Mr = 814.78F(000) = 428
Triclinic, P1Dx = 1.474 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.1548 (4) ÅCell parameters from 2102 reflections
b = 9.9424 (5) Åθ = 2.4–23.2°
c = 13.3567 (7) ŵ = 0.12 mm1
α = 96.895 (1)°T = 298 K
β = 95.201 (1)°Block, colorless
γ = 101.439 (2)°0.20 × 0.13 × 0.10 mm
V = 918.11 (8) Å3
Bruker SMART APEX CCD area-detector diffractometer3925 independent reflections
Radiation source: fine focus sealed Siemens Mo tube2757 reflections with I > 2σ(I)
graphiteRint = 0.029
0.3° wide ω scansθmax = 27.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −8→9
Tmin = 0.967, Tmax = 0.989k = −11→12
10341 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.122H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0631P)2 + 0.0369P] where P = (Fo2 + 2Fc2)/3
3925 reflections(Δ/σ)max = 0.001
286 parametersΔρmax = 0.31 e Å3
0 restraintsΔρmin = −0.18 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.2128 (2)−0.05764 (17)0.89657 (11)0.0263 (4)
C20.1004 (2)−0.17749 (17)0.84080 (11)0.0263 (4)
H20.0409−0.24810.87430.032*
C30.0756 (2)−0.19338 (17)0.73487 (11)0.0274 (4)
C40.1609 (2)−0.08588 (18)0.68651 (12)0.0295 (4)
H40.1465−0.09640.61590.035*
C50.2676 (2)0.03761 (17)0.74101 (12)0.0267 (4)
C60.2947 (2)0.04896 (17)0.84640 (12)0.0274 (4)
H60.36940.12970.88380.033*
C70.2458 (2)−0.04026 (18)1.01134 (12)0.0297 (4)
C8−0.0459 (2)−0.32408 (19)0.67241 (12)0.0332 (4)
C90.3502 (2)0.15651 (19)0.68720 (13)0.0310 (4)
C100.2728 (3)−0.0067 (2)1.32738 (13)0.0391 (5)
H100.34300.07901.31750.047*
C110.1114 (3)−0.2190 (2)1.29964 (14)0.0432 (5)
H110.0505−0.30631.26610.052*
C120.1222 (3)−0.1753 (2)1.39965 (13)0.0421 (5)
H120.0702−0.22611.44840.051*
C130.2479 (3)0.3752 (2)0.99158 (14)0.0401 (5)
H130.23790.28761.01110.048*
C140.2247 (3)0.4896 (2)1.04845 (14)0.0396 (5)
H140.19490.49611.11500.048*
C150.2920 (3)0.5449 (2)0.90127 (14)0.0400 (5)
H150.31760.59540.84800.048*
C160.3894 (3)0.4987 (2)0.58396 (13)0.0422 (5)
H16A0.37730.53180.65390.051*
H16B0.27100.43410.55570.051*
C170.5803 (3)0.3814 (2)0.47501 (14)0.0462 (5)
H17A0.46880.31260.44280.055*
H17B0.69100.33870.47470.055*
N10.2057 (2)−0.11215 (17)1.25638 (11)0.0396 (4)
H1A0.217 (3)−0.111 (2)1.1923 (16)0.048*
N20.2245 (2)−0.04171 (17)1.41557 (11)0.0389 (4)
H2A0.265 (3)0.014 (2)1.4745 (16)0.047*
N30.2891 (2)0.41179 (16)0.89917 (12)0.0374 (4)
H3A0.320 (3)0.355 (2)0.8468 (14)0.045*
N40.2528 (2)0.59528 (17)0.99092 (11)0.0361 (4)
H4A0.240 (3)0.686 (2)1.0107 (14)0.043*
N50.5516 (2)0.42669 (17)0.58090 (11)0.0388 (4)
H5A0.667 (3)0.486 (2)0.6204 (14)0.047*
H5B0.520 (3)0.350 (2)0.6120 (15)0.047*
O10.3047 (2)0.07841 (13)1.05718 (9)0.0488 (4)
O20.21058 (18)−0.14867 (12)1.05409 (8)0.0379 (3)
O3−0.15144 (18)−0.40803 (13)0.71833 (9)0.0450 (4)
O4−0.0363 (2)−0.34118 (16)0.58017 (9)0.0617 (5)
O50.3573 (2)0.13542 (13)0.59351 (9)0.0436 (3)
O60.41142 (19)0.27435 (12)0.73950 (9)0.0415 (3)
O70.4407 (2)0.26393 (16)1.22724 (10)0.0498 (4)
H7A0.407 (3)0.201 (3)1.1749 (19)0.075*
H7B0.342 (3)0.306 (3)1.2364 (18)0.075*
U11U22U33U12U13U23
C10.0326 (9)0.0259 (9)0.0207 (8)0.0069 (7)0.0028 (6)0.0045 (6)
C20.0329 (9)0.0236 (9)0.0223 (8)0.0025 (7)0.0046 (6)0.0073 (6)
C30.0293 (8)0.0277 (10)0.0243 (8)0.0042 (7)0.0023 (6)0.0038 (7)
C40.0368 (9)0.0330 (10)0.0186 (7)0.0064 (8)0.0040 (6)0.0047 (7)
C50.0301 (9)0.0256 (9)0.0265 (8)0.0071 (7)0.0068 (6)0.0069 (7)
C60.0330 (9)0.0218 (9)0.0261 (8)0.0036 (7)0.0025 (7)0.0027 (7)
C70.0397 (10)0.0282 (10)0.0213 (8)0.0080 (8)0.0034 (7)0.0026 (7)
C80.0360 (9)0.0336 (11)0.0256 (8)0.0009 (8)−0.0006 (7)0.0013 (7)
C90.0357 (9)0.0301 (10)0.0307 (9)0.0095 (8)0.0088 (7)0.0103 (7)
C100.0498 (11)0.0398 (12)0.0308 (9)0.0124 (9)0.0099 (8)0.0090 (8)
C110.0501 (11)0.0425 (12)0.0332 (10)0.0025 (9)0.0019 (8)0.0040 (9)
C120.0477 (11)0.0478 (13)0.0322 (10)0.0064 (10)0.0094 (8)0.0140 (9)
C130.0473 (11)0.0327 (11)0.0427 (10)0.0080 (9)0.0089 (8)0.0128 (9)
C140.0465 (11)0.0394 (12)0.0352 (10)0.0105 (9)0.0087 (8)0.0086 (8)
C150.0500 (11)0.0342 (12)0.0376 (10)0.0081 (9)0.0112 (8)0.0097 (8)
C160.0441 (11)0.0506 (13)0.0269 (9)−0.0014 (9)0.0040 (8)0.0040 (8)
C170.0566 (12)0.0361 (12)0.0432 (11)0.0085 (10)−0.0001 (9)0.0013 (9)
N10.0508 (10)0.0500 (11)0.0216 (7)0.0155 (8)0.0074 (7)0.0090 (7)
N20.0487 (9)0.0454 (11)0.0233 (7)0.0121 (8)0.0055 (7)0.0035 (7)
N30.0446 (9)0.0289 (9)0.0390 (9)0.0081 (7)0.0091 (7)0.0020 (7)
N40.0434 (9)0.0264 (9)0.0391 (8)0.0086 (7)0.0076 (7)0.0037 (7)
N50.0455 (10)0.0309 (9)0.0344 (8)−0.0067 (8)−0.0049 (7)0.0143 (7)
O10.0874 (11)0.0259 (7)0.0268 (6)0.0060 (7)−0.0025 (6)−0.0047 (5)
O20.0642 (9)0.0285 (7)0.0213 (6)0.0072 (6)0.0072 (5)0.0076 (5)
O30.0521 (8)0.0360 (8)0.0371 (7)−0.0124 (6)0.0057 (6)0.0016 (6)
O40.0783 (11)0.0614 (10)0.0263 (7)−0.0223 (8)0.0034 (7)−0.0059 (6)
O50.0648 (9)0.0375 (8)0.0297 (7)0.0058 (6)0.0163 (6)0.0107 (5)
O60.0592 (8)0.0252 (7)0.0393 (7)0.0009 (6)0.0146 (6)0.0079 (6)
O70.0637 (10)0.0433 (9)0.0349 (7)−0.0004 (7)0.0066 (7)−0.0058 (6)
C1—C61.382 (2)C12—H120.9300
C1—C21.385 (2)C13—C141.337 (3)
C1—C71.513 (2)C13—N31.369 (2)
C2—C31.396 (2)C13—H130.9300
C2—H20.9300C14—N41.369 (2)
C3—C41.382 (2)C14—H140.9300
C3—C81.517 (2)C15—N31.317 (2)
C4—C51.390 (2)C15—N41.318 (2)
C4—H40.9300C15—H150.9300
C5—C61.391 (2)C16—N51.481 (3)
C5—C91.506 (2)C16—C17i1.497 (3)
C6—H60.9300C16—H16A0.9700
C7—O11.236 (2)C16—H16B0.9700
C7—O21.272 (2)C17—N51.477 (2)
C8—O41.233 (2)C17—C16i1.497 (3)
C8—O31.265 (2)C17—H17A0.9700
C9—O51.251 (2)C17—H17B0.9700
C9—O61.264 (2)N1—H1A0.87 (2)
C10—N11.307 (2)N2—H2A0.90 (2)
C10—N21.324 (2)N3—H3A0.915 (19)
C10—H100.9300N4—H4A0.93 (2)
C11—C121.345 (3)N5—H5A0.98 (2)
C11—N11.361 (2)N5—H5B0.91 (2)
C11—H110.9300O7—H7A0.86 (3)
C12—N21.365 (2)O7—H7B0.90 (3)
C6—C1—C2119.32 (14)N3—C13—H13126.6
C6—C1—C7119.29 (14)C13—C14—N4107.51 (16)
C2—C1—C7121.39 (15)C13—C14—H14126.2
C1—C2—C3120.66 (15)N4—C14—H14126.2
C1—C2—H2119.7N3—C15—N4109.13 (17)
C3—C2—H2119.7N3—C15—H15125.4
C4—C3—C2118.85 (14)N4—C15—H15125.4
C4—C3—C8119.66 (14)N5—C16—C17i110.90 (16)
C2—C3—C8121.48 (15)N5—C16—H16A109.5
C3—C4—C5121.49 (14)C17i—C16—H16A109.5
C3—C4—H4119.3N5—C16—H16B109.5
C5—C4—H4119.3C17i—C16—H16B109.5
C4—C5—C6118.38 (15)H16A—C16—H16B108.0
C4—C5—C9120.74 (14)N5—C17—C16i111.07 (16)
C6—C5—C9120.88 (15)N5—C17—H17A109.4
C1—C6—C5121.22 (15)C16i—C17—H17A109.4
C1—C6—H6119.4N5—C17—H17B109.4
C5—C6—H6119.4C16i—C17—H17B109.4
O1—C7—O2124.44 (15)H17A—C17—H17B108.0
O1—C7—C1117.75 (16)C10—N1—C11108.59 (15)
O2—C7—C1117.81 (14)C10—N1—H1A124.3 (14)
O4—C8—O3124.28 (16)C11—N1—H1A127.1 (14)
O4—C8—C3117.93 (16)C10—N2—C12108.49 (16)
O3—C8—C3117.79 (14)C10—N2—H2A122.6 (13)
O5—C9—O6122.58 (16)C12—N2—H2A128.7 (13)
O5—C9—C5119.37 (16)C15—N3—C13108.45 (16)
O6—C9—C5118.05 (14)C15—N3—H3A125.6 (13)
N1—C10—N2108.95 (18)C13—N3—H3A125.7 (12)
N1—C10—H10125.5C15—N4—C14108.03 (16)
N2—C10—H10125.5C15—N4—H4A126.1 (12)
C12—C11—N1107.52 (17)C14—N4—H4A125.8 (12)
C12—C11—H11126.2C17—N5—C16110.82 (14)
N1—C11—H11126.2C17—N5—H5A113.0 (11)
C11—C12—N2106.45 (17)C16—N5—H5A110.0 (11)
C11—C12—H12126.8C17—N5—H5B108.4 (13)
N2—C12—H12126.8C16—N5—H5B107.1 (13)
C14—C13—N3106.88 (17)H5A—N5—H5B107.3 (16)
C14—C13—H13126.6H7A—O7—H7B108 (2)
C6—C1—C2—C32.5 (2)C4—C3—C8—O3−166.35 (16)
C7—C1—C2—C3−178.26 (15)C2—C3—C8—O312.2 (3)
C1—C2—C3—C4−1.7 (3)C4—C5—C9—O5−14.7 (3)
C1—C2—C3—C8179.66 (15)C6—C5—C9—O5165.86 (16)
C2—C3—C4—C5−1.0 (3)C4—C5—C9—O6165.85 (16)
C8—C3—C4—C5177.65 (15)C6—C5—C9—O6−13.6 (2)
C3—C4—C5—C62.9 (3)N1—C11—C12—N2−0.3 (2)
C3—C4—C5—C9−176.58 (15)N3—C13—C14—N4−0.3 (2)
C2—C1—C6—C5−0.5 (2)N2—C10—N1—C11−0.1 (2)
C7—C1—C6—C5−179.78 (15)C12—C11—N1—C100.3 (2)
C4—C5—C6—C1−2.1 (2)N1—C10—N2—C120.0 (2)
C9—C5—C6—C1177.32 (15)C11—C12—N2—C100.2 (2)
C6—C1—C7—O117.1 (2)N4—C15—N3—C13−0.5 (2)
C2—C1—C7—O1−162.20 (16)C14—C13—N3—C150.5 (2)
C6—C1—C7—O2−163.16 (15)N3—C15—N4—C140.3 (2)
C2—C1—C7—O217.6 (2)C13—C14—N4—C150.0 (2)
C4—C3—C8—O413.2 (3)C16i—C17—N5—C1656.2 (2)
C2—C3—C8—O4−168.22 (17)C17i—C16—N5—C17−56.1 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O20.87 (2)1.83 (2)2.6870 (18)166.9 (19)
N2—H2A···O5ii0.90 (2)1.86 (2)2.7522 (19)177.4 (19)
N3—H3A···O60.915 (19)1.80 (2)2.701 (2)168.8 (18)
N4—H4A···O2iii0.93 (2)1.74 (2)2.668 (2)176.6 (18)
N5—H5A···O3iv0.98 (2)1.83 (2)2.7872 (19)166.7 (17)
N5—H5A···O4iv0.98 (2)2.60 (2)3.366 (2)135.7 (14)
N5—H5B···O50.91 (2)2.19 (2)2.985 (2)145.2 (16)
N5—H5B···O60.91 (2)2.10 (2)2.888 (2)145.1 (18)
O7—H7A···O10.86 (3)1.86 (3)2.7184 (17)171 (2)
O7—H7B···O3v0.90 (3)1.95 (3)2.840 (2)169 (2)
C10—H10···O70.932.353.217 (3)156
C12—H12···O4ii0.932.323.244 (2)175
C13—H13···O10.932.363.267 (2)164
C14—H14···O3v0.932.513.372 (2)154
C15—H15···O7vi0.932.383.186 (2)145
C16—H16B···O4vii0.972.323.200 (2)150
C16—H16A···O7vi0.972.483.207 (2)132
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O20.87 (2)1.83 (2)2.6870 (18)166.9 (19)
N2—H2A⋯O5i0.90 (2)1.86 (2)2.7522 (19)177.4 (19)
N3—H3A⋯O60.915 (19)1.80 (2)2.701 (2)168.8 (18)
N4—H4A⋯O2ii0.93 (2)1.74 (2)2.668 (2)176.6 (18)
N5—H5A⋯O3iii0.98 (2)1.83 (2)2.7872 (19)166.7 (17)
N5—H5A⋯O4iii0.98 (2)2.60 (2)3.366 (2)135.7 (14)
N5—H5B⋯O50.91 (2)2.19 (2)2.985 (2)145.2 (16)
N5—H5B⋯O60.91 (2)2.10 (2)2.888 (2)145.1 (18)
O7—H7A⋯O10.86 (3)1.86 (3)2.7184 (17)171 (2)
O7—H7B⋯O3iv0.90 (3)1.95 (3)2.840 (2)169 (2)
C10—H10⋯O70.932.353.217 (3)156
C12—H12⋯O4i0.932.323.244 (2)175
C13—H13⋯O10.932.363.267 (2)164
C14—H14⋯O3iv0.932.513.372 (2)154
C15—H15⋯O7v0.932.383.186 (2)145
C16—H16B⋯O4vi0.972.323.200 (2)150
C16—H16A⋯O7v0.972.483.207 (2)132

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

  6 in total

Review 1.  Anion-pi interactions.

Authors:  Brandi L Schottel; Helen T Chifotides; Kim R Dunbar
Journal:  Chem Soc Rev       Date:  2007-09-12       Impact factor: 54.564

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  The formation of paracetamol (acetaminophen) adducts with hydrogen-bond acceptors.

Authors:  Iain D H Oswald; David R Allan; Pamela A McGregor; W D Samuel Motherwell; Simon Parsons; Colin R Pulham
Journal:  Acta Crystallogr B       Date:  2002-11-28

4.  Three-dimensional network in piper-azine-1,4-diium-picrate-piperazine (1/2/1).

Authors:  Zhong-Long Wang; Li-Hui Jia
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-03-05

5.  The crucial role of C-H...O and C=O...pi interactions in the building of three-dimensional structures of dicarboxylic acid-biimidazole compounds.

Authors:  Xiao-Li Gao; Li-Ping Lu; Miao-Li Zhu
Journal:  Acta Crystallogr C       Date:  2009-03-07       Impact factor: 1.172

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.