Literature DB >> 21201899

1-Methyl-1-azonia-3,5-diaza-7-phosphatricyclo-[3.3.1.1]decane tetra-fluoro-borate.

Piotr Smoleński, Alexander M Kirillov, M Fátima C Guedes da Silva, Armando J L Pombeiro.   

Abstract

The title compound, C(7)H(15)N(3)P(+)·BF(4) (-) or [PTA-Me][BF(4)], is the N-methyl-ated derivative of the well known water-soluble amino-phosphine 1,3,5-triaza-7-phosphaadamantane (PTA). The asymmetric unit consists of a cage-like cation [PTA-Me](+) and a disordered tetra-fluoro-borate anion; two F atoms are disordered equally over two sites. A network of weak inter-molecular C-H⋯F hydrogen bonds results in a three-dimensional supra-molecular assembly.

Entities:  

Year:  2008        PMID: 21201899      PMCID: PMC2960824          DOI: 10.1107/S1600536808003401

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Kirillov et al. (2007 ▶); Smoleński & Pombeiro (2008 ▶). For a comprehensive review of PTA chemistry, see: Phillips et al. (2004 ▶). For the synthesis of PTA and [PTA-Me]I, see: Daigle et al. (1974 ▶); Daigle (1998 ▶). For related organic structures, see: Jogun et al. (1978 ▶); Forward et al. (1996 ▶); Otto et al. (2005 ▶); Kirillov et al. (2008 ▶). For related metal–organic structures, see: Kovacs et al. (2004 ▶); Smoleński et al. (2003 ▶); Pruchnik et al. (1999 ▶).

Experimental

Crystal data

C7H15N3P+·BF4 M = 259.00 Orthorhombic, a = 11.994 (2) Å b = 11.6933 (18) Å c = 15.569 (2) Å V = 2183.5 (6) Å3 Z = 8 Mo Kα radiation μ = 0.28 mm−1 T = 150 (2) K 0.16 × 0.12 × 0.10 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.956, T max = 0.972 10402 measured reflections 1948 independent reflections 1391 reflections with I > 2σ(I) R int = 0.061

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.121 S = 1.05 1948 reflections 164 parameters H-atom parameters constrained Δρmax = 0.55 e Å−3 Δρmin = −0.36 e Å−3 Data collection: SMART (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808003401/hb2695sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808003401/hb2695Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C7H15N3P+·BF4F000 = 1072
Mr = 259.00Dx = 1.576 Mg m3
Orthorhombic, PbcaMo Kα radiation λ = 0.71069 Å
Hall symbol: -P 2ac 2abCell parameters from 1323 reflections
a = 11.994 (2) Åθ = 3.4–25.2º
b = 11.6933 (18) ŵ = 0.28 mm1
c = 15.569 (2) ÅT = 150 (2) K
V = 2183.5 (6) Å3Plate, colourless
Z = 80.16 × 0.12 × 0.10 mm
Bruker SMART CCD diffractometer1948 independent reflections
Radiation source: fine-focus sealed tube1391 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.061
T = 150(2) Kθmax = 25.3º
ω scansθmin = 2.6º
Absorption correction: multi-scan(SADABS; Bruker, 2004)h = −14→14
Tmin = 0.956, Tmax = 0.972k = −14→13
10402 measured reflectionsl = −18→15
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.045H-atom parameters constrained
wR(F2) = 0.121  w = 1/[σ2(Fo2) + (0.0512P)2 + 1.8936P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
1948 reflectionsΔρmax = 0.55 e Å3
164 parametersΔρmin = −0.36 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.5509 (2)0.7943 (2)0.68018 (19)0.0248 (7)
H1A0.53290.87360.66270.030*
H1B0.63030.78060.66630.030*
C20.3782 (2)0.7850 (2)0.79565 (18)0.0245 (7)
H2A0.35050.76670.85390.029*
H2B0.35330.86350.78150.029*
C30.5459 (2)0.6251 (2)0.80269 (18)0.0253 (7)
H3A0.62510.60430.79370.030*
H3B0.52470.59970.86110.030*
C40.5074 (2)0.5884 (2)0.65244 (18)0.0219 (6)
H4A0.46710.53600.61330.026*
H4B0.58830.57490.64480.026*
C50.3552 (2)0.7325 (2)0.64672 (18)0.0211 (6)
H5A0.33640.81360.63570.025*
H5B0.31000.68480.60740.025*
C60.3583 (2)0.5857 (2)0.75217 (18)0.0216 (6)
H6A0.33840.56780.81240.026*
H6B0.31460.53440.71450.026*
C110.5016 (3)0.7311 (3)0.53413 (18)0.0295 (7)
H11A0.45570.67800.50060.044*
H11B0.58060.71730.52170.044*
H11C0.48240.80990.51870.044*
B10.2262 (3)0.4814 (3)0.4904 (2)0.0266 (8)
N10.48031 (17)0.71288 (17)0.62773 (13)0.0146 (5)
N20.32749 (18)0.70450 (19)0.73373 (14)0.0199 (5)
N30.47713 (18)0.56276 (18)0.73947 (14)0.0190 (5)
F1A0.1098 (3)0.5043 (4)0.4732 (3)0.0580 (13)0.59
F20.23739 (16)0.37060 (14)0.46049 (11)0.0376 (5)
F3A0.2858 (5)0.5568 (4)0.4471 (3)0.0634 (14)0.59
F40.2252 (2)0.48727 (18)0.57697 (12)0.0627 (7)
P10.53278 (7)0.78233 (7)0.79717 (5)0.0275 (2)
F1B0.3444 (5)0.5214 (6)0.4871 (5)0.071 (2)0.41
F3B0.1703 (10)0.5502 (6)0.4431 (5)0.096 (3)0.41
U11U22U33U12U13U23
C10.0204 (14)0.0198 (15)0.0343 (18)−0.0049 (12)−0.0006 (13)0.0022 (12)
C20.0265 (15)0.0223 (15)0.0246 (16)0.0008 (12)0.0046 (13)−0.0034 (12)
C30.0204 (15)0.0314 (16)0.0240 (16)−0.0016 (12)−0.0053 (13)0.0056 (13)
C40.0266 (15)0.0158 (14)0.0233 (17)0.0058 (12)0.0027 (12)0.0003 (11)
C50.0187 (14)0.0220 (15)0.0225 (16)0.0024 (11)−0.0058 (12)0.0006 (12)
C60.0184 (14)0.0244 (16)0.0219 (15)−0.0034 (12)0.0007 (12)0.0028 (12)
C110.0391 (17)0.0301 (17)0.0193 (17)0.0029 (14)0.0054 (13)0.0036 (13)
B10.039 (2)0.0219 (18)0.0187 (19)0.0019 (16)0.0014 (15)−0.0018 (14)
N10.0174 (11)0.0138 (11)0.0126 (12)−0.0002 (9)0.0006 (9)0.0028 (8)
N20.0176 (11)0.0219 (12)0.0203 (12)−0.0006 (9)0.0009 (10)0.0008 (10)
N30.0215 (12)0.0179 (12)0.0177 (13)0.0010 (10)−0.0011 (10)0.0039 (9)
F1A0.039 (2)0.044 (3)0.091 (4)0.0133 (19)−0.020 (2)−0.007 (2)
F20.0468 (12)0.0268 (10)0.0393 (12)0.0008 (8)−0.0028 (9)−0.0112 (8)
F3A0.085 (4)0.045 (3)0.060 (3)−0.027 (3)0.034 (3)0.009 (2)
F40.120 (2)0.0407 (12)0.0273 (12)−0.0117 (13)−0.0007 (12)−0.0048 (9)
P10.0306 (4)0.0273 (4)0.0244 (5)−0.0070 (3)−0.0052 (3)−0.0014 (3)
F1B0.044 (4)0.075 (5)0.094 (6)−0.032 (3)0.031 (4)−0.057 (4)
F3B0.165 (10)0.047 (5)0.075 (6)0.046 (6)−0.072 (6)−0.005 (4)
C1—N11.514 (3)C5—N11.547 (3)
C1—P11.840 (3)C5—H5A0.9900
C1—H1A0.9900C5—H5B0.9900
C1—H1B0.9900C6—N31.463 (3)
C2—N21.479 (3)C6—N21.466 (3)
C2—P11.854 (3)C6—H6A0.9900
C2—H2A0.9900C6—H6B0.9900
C2—H2B0.9900C11—N11.495 (3)
C3—N31.477 (3)C11—H11A0.9800
C3—P11.847 (3)C11—H11B0.9800
C3—H3A0.9900C11—H11C0.9800
C3—H3B0.9900B1—F3B1.281 (7)
C4—N31.434 (3)B1—F3A1.319 (5)
C4—N11.540 (3)B1—F41.350 (4)
C4—H4A0.9900B1—F21.383 (4)
C4—H4B0.9900B1—F1A1.447 (5)
C5—N21.433 (4)B1—F1B1.493 (7)
N1—C1—P1114.83 (18)N1—C11—H11A109.5
N1—C1—H1A108.6N1—C11—H11B109.5
P1—C1—H1A108.6H11A—C11—H11B109.5
N1—C1—H1B108.6N1—C11—H11C109.5
P1—C1—H1B108.6H11A—C11—H11C109.5
H1A—C1—H1B107.5H11B—C11—H11C109.5
N2—C2—P1114.14 (18)F3B—B1—F3A64.6 (6)
N2—C2—H2A108.7F3B—B1—F4122.5 (5)
P1—C2—H2A108.7F3A—B1—F4118.7 (4)
N2—C2—H2B108.7F3B—B1—F2116.5 (4)
P1—C2—H2B108.7F3A—B1—F2113.7 (3)
H2A—C2—H2B107.6F4—B1—F2112.6 (3)
N3—C3—P1114.38 (18)F3B—B1—F1A43.2 (5)
N3—C3—H3A108.7F3A—B1—F1A107.7 (4)
P1—C3—H3A108.7F4—B1—F1A99.6 (3)
N3—C3—H3B108.7F2—B1—F1A101.8 (3)
P1—C3—H3B108.7F3B—B1—F1B106.3 (7)
H3A—C3—H3B107.6F3A—B1—F1B42.2 (3)
N3—C4—N1112.3 (2)F4—B1—F1B91.5 (4)
N3—C4—H4A109.1F2—B1—F1B101.0 (3)
N1—C4—H4A109.1F1A—B1—F1B148.4 (5)
N3—C4—H4B109.1C11—N1—C1109.9 (2)
N1—C4—H4B109.1C11—N1—C4110.0 (2)
H4A—C4—H4B107.9C1—N1—C4110.0 (2)
N2—C5—N1111.8 (2)C11—N1—C5109.3 (2)
N2—C5—H5A109.2C1—N1—C5110.3 (2)
N1—C5—H5A109.2C4—N1—C5107.28 (19)
N2—C5—H5B109.2C5—N2—C6110.1 (2)
N1—C5—H5B109.2C5—N2—C2112.1 (2)
H5A—C5—H5B107.9C6—N2—C2111.8 (2)
N3—C6—N2113.1 (2)C4—N3—C6109.6 (2)
N3—C6—H6A109.0C4—N3—C3112.6 (2)
N2—C6—H6A109.0C6—N3—C3111.3 (2)
N3—C6—H6B109.0C1—P1—C396.42 (13)
N2—C6—H6B109.0C1—P1—C295.98 (13)
H6A—C6—H6B107.8C3—P1—C295.91 (13)
D—H···AD—HH···AD···AD—H···A
C2—H2A···F2i0.992.543.438 (3)151
C5—H5A···F4ii0.992.353.314 (3)166
C6—H6B···F40.992.463.364 (3)152
C11—H11B···F2iii0.982.433.350 (4)156
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2A⋯F2i0.992.543.438 (3)151
C5—H5A⋯F4ii0.992.353.314 (3)166
C6—H6B⋯F40.992.463.364 (3)152
C11—H11B⋯F2iii0.982.433.350 (4)156

Symmetry codes: (i) ; (ii) ; (iii) .

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  New rhodium(III) and ruthenium(II) water-soluble complexes with 3,5-diaza-1-methyl-1-azonia-7-phosphatricyclo[3.3.1.1(3,7)]decane.

Authors:  Piotr Smoleński; Florian P Pruchnik; Zbigniew Ciunik; Tadeusz Lis
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3.  1-Methyl-1-azonia-3,5-diaza-7-phospha-tricyclo-[3.3.1.1]decane 7-oxide triiodide.

Authors:  Alexander M Kirillov; Piotr Smoleński; M Fátima C Guedes da Silva; Armando J L Pombeiro
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-01-23

4.  Reactions of [Ru(H(2)O)(6)](2+) with water-soluble tertiary phosphines.

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Journal:  Dalton Trans       Date:  2004-06-25       Impact factor: 4.390

5.  Water-soluble and stable dinitrogen phosphine complexes trans-[ReCl(N2)(PTA-H)n(PTA)4-n]n+ (n = 0-4), the first with 1,3,5-triaza-7-phosphaadamantane.

Authors:  Piotr Smoleński; Armando J L Pombeiro
Journal:  Dalton Trans       Date:  2008-01-07       Impact factor: 4.390

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1.  Pentafluorophenyl Platinum(II) Complexes of PTA and its N-Allyl and N-Benzyl Derivatives: Synthesis, Characterization and Biological Activity.

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