Literature DB >> 21201518

1-Methyl-1-azonia-3,5-diaza-7-phospha-tricyclo-[3.3.1.1]decane 7-oxide triiodide.

Alexander M Kirillov, Piotr Smoleński, M Fátima C Guedes da Silva, Armando J L Pombeiro.   

Abstract

The title compound, C(7)H(15)N(3)OP(+)·I(3) (-), is a derivative of the well known n class="Chemical">water-soluble amino-phosphine 1,3,5-triaza-7-phosphaadamantane (PTA). The crystal structure is composed of a cage-like 1-methyl-1-azonia-3,5-diaza-7-phospha-tricyclo-[3.3.1.1]decane 7-oxide cation and a triiodide anion. The N-methyl-ation of the PTA cage results in a slight elongation of the corresponding C-N bonds, while the oxidation of the P atom leads to a slight shortening of the C-P bonds in comparison with those of PTA. In general, most of the bonding parameters are comparable with those reported for related compounds bearing the PTA core. Two inter-molecular C-H⋯O hydrogen bonds between methyl-ene groups and the P=O group are responsible for the linkage of neighbouring cations into linear one-dimensional hydrogen-bonded chains.

Entities:  

Year:  2008        PMID: 21201518      PMCID: PMC2960408          DOI: 10.1107/S1600536808001426

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a comprehensive review of PTA chemistry, see: Phillips et al. (2004 ▶). For general background, see: Kirillov et al. (2007 ▶); Smoleński & Pombeiro (2008 ▶). For synthesis of n class="Chemical">PTA and its N-methyl­ated derivative, see: Daigle et al. (1974 ▶); Daigle (1998 ▶). For related structures, see: Forward et al. (1996a ▶,b ▶); Otto et al. (2005 ▶); Frost et al. (2006 ▶); Marsh et al. (2002 ▶).

Experimental

Crystal data

C7H15N3OP+·I3 − M = 568.89 Monoclinic, a = 7.1570 (8) Å b = 8.2257 (8) Å c = 25.903 (3) Å β = 92.472 (7)° V = 1523.5 (3) Å3 Z = 4 Mo Kα radiation μ = 6.24 mm−1 T = 150 (2) K 0.13 × 0.10 × 0.10 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.497, T max = 0.574 (expected range = 0.464–0.536) 11526 measured reflections 2789 independent reflections 2214 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.102 S = 1.12 2789 reflections 172 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 2.44 e Å−3 Δρmin = −1.03 e Å−3 Data collection: SMART (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAIn class="Chemical">NT; program(s) used to solve structure: WinGX (Version 1.70.01; Farrugia, 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808001426/kp2159sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808001426/kp2159Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C7H15N3OP+·I3F000 = 1040
Mr = 568.89Dx = 2.480 Mg m3
Monoclinic, P21/nMo Kα radiation λ = 0.71069 Å
Hall symbol: -P2ynCell parameters from 2835 reflections
a = 7.1570 (8) Åθ = 2.6–27.9º
b = 8.2257 (8) ŵ = 6.24 mm1
c = 25.903 (3) ÅT = 150 (2) K
β = 92.472 (7)ºPlate, red
V = 1523.5 (3) Å30.13 × 0.10 × 0.10 mm
Z = 4
Bruker SMART CCD area-detector diffractometer2789 independent reflections
Radiation source: fine-focus sealed tube2214 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.040
T = 150(2) Kθmax = 25.4º
φ and ω scansθmin = 2.9º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996)h = −8→8
Tmin = 0.497, Tmax = 0.574k = −9→9
11526 measured reflectionsl = −29→31
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.042H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.102  w = 1/[σ2(Fo2) + (0.045P)2 + 6.2243P] where P = (Fo2 + 2Fc2)/3
S = 1.12(Δ/σ)max = 0.017
2789 reflectionsΔρmax = 2.44 e Å3
172 parametersΔρmin = −1.03 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.5522 (9)0.4541 (10)0.1979 (3)0.0186 (16)
C20.5510 (9)0.1132 (8)0.1974 (3)0.0156 (15)
C30.5535 (10)0.2823 (10)0.1042 (3)0.0188 (15)
C40.8586 (11)0.2823 (11)0.0631 (3)0.0294 (18)
H4A0.99420.28190.07010.044*
H4B0.82300.37960.04320.044*
H4C0.82220.18510.04320.044*
C120.8197 (10)0.2815 (10)0.2227 (3)0.0192 (15)
C230.8255 (10)0.1301 (8)0.1442 (3)0.0162 (15)
C310.8255 (10)0.4347 (10)0.1446 (3)0.0192 (16)
N10.7565 (7)0.4292 (7)0.1960 (2)0.0169 (13)
N20.7569 (7)0.1334 (7)0.1956 (2)0.0141 (12)
N30.7614 (8)0.2828 (7)0.1131 (2)0.0168 (12)
O10.2300 (7)0.2825 (7)0.1582 (2)0.0268 (12)
P10.4367 (2)0.2827 (2)0.16547 (7)0.0168 (4)
I10.42016 (7)0.78153 (6)0.088953 (18)0.02270 (15)
I20.14227 (7)0.78170 (6)0.16786 (2)0.02691 (16)
I30.73414 (8)0.78543 (8)0.02143 (2)0.03606 (18)
H1A0.517 (12)0.452 (11)0.232 (4)0.043*
H1B0.498 (12)0.558 (11)0.183 (3)0.043*
H2A0.501 (12)0.108 (11)0.232 (4)0.043*
H2B0.521 (12)0.008 (12)0.182 (3)0.050*
H3A0.512 (14)0.190 (12)0.084 (4)0.060*
H3B0.522 (14)0.380 (13)0.085 (4)0.060*
H12A0.948 (16)0.286 (12)0.225 (4)0.060*
H12B0.793 (14)0.282 (11)0.256 (4)0.050*
H23A0.964 (15)0.135 (13)0.147 (4)0.060*
H23B0.769 (13)0.034 (13)0.127 (4)0.060*
H31A0.959 (14)0.414 (12)0.147 (4)0.060*
H31B0.768 (13)0.538 (13)0.126 (4)0.060*
U11U22U33U12U13U23
C10.010 (3)0.026 (5)0.020 (4)0.005 (3)0.001 (3)−0.003 (3)
C20.014 (3)0.011 (4)0.022 (4)−0.002 (3)0.006 (3)0.000 (3)
C30.013 (3)0.021 (4)0.023 (4)0.002 (3)−0.003 (3)0.000 (3)
C40.027 (4)0.041 (5)0.022 (4)−0.001 (4)0.017 (3)−0.007 (4)
C120.016 (4)0.021 (4)0.020 (4)−0.001 (3)−0.006 (3)0.000 (3)
C230.018 (4)0.006 (4)0.026 (4)0.004 (3)0.005 (3)0.002 (3)
C310.012 (4)0.027 (5)0.019 (4)0.001 (3)0.002 (3)0.001 (3)
N10.011 (3)0.020 (3)0.019 (3)−0.001 (2)−0.002 (2)0.000 (3)
N20.009 (3)0.017 (3)0.017 (3)0.001 (2)0.002 (2)0.002 (2)
N30.014 (3)0.020 (3)0.016 (3)−0.005 (3)0.002 (2)−0.004 (3)
O10.009 (2)0.029 (3)0.042 (3)0.000 (2)−0.002 (2)0.002 (3)
P10.0075 (8)0.0187 (9)0.0244 (10)0.0007 (7)0.0003 (7)−0.0004 (8)
I10.0282 (3)0.0183 (3)0.0215 (3)0.0009 (2)−0.00114 (19)−0.0002 (2)
I20.0230 (3)0.0207 (3)0.0376 (3)0.0000 (2)0.0081 (2)0.0000 (2)
I30.0341 (3)0.0527 (4)0.0218 (3)0.0017 (3)0.0054 (2)−0.0023 (3)
C1—N11.479 (8)C12—N11.462 (9)
C1—P11.821 (8)C12—N21.467 (10)
C1—H1A0.94 (9)C12—H12A0.92 (11)
C1—H1B1.01 (9)C12—H12B0.90 (11)
C2—N21.486 (8)C23—N21.440 (9)
C2—P11.799 (7)C23—N31.550 (9)
C2—H2A0.98 (9)C23—H23A0.99 (10)
C2—H2B0.97 (10)C23—H23B0.99 (10)
C3—N31.495 (9)C31—N11.441 (9)
C3—P11.825 (8)C31—N31.551 (9)
C3—H3A0.96 (10)C31—H31A0.97 (10)
C3—H3B0.96 (11)C31—H31B1.06 (10)
C4—N31.496 (9)O1—P11.483 (5)
C4—H4A0.9800I1—I32.9067 (8)
C4—H4B0.9800I1—I22.9127 (7)
C4—H4C0.9800
N1—C1—P1107.9 (5)N2—C23—H23A108 (6)
N1—C1—H1A109 (5)N3—C23—H23A106 (6)
P1—C1—H1A107 (6)N2—C23—H23B107 (6)
N1—C1—H1B118 (5)N3—C23—H23B107 (6)
P1—C1—H1B109 (5)H23A—C23—H23B117 (8)
H1A—C1—H1B105 (7)N1—C31—N3110.8 (6)
N2—C2—P1109.3 (5)N1—C31—H31A109 (6)
N2—C2—H2A116 (5)N3—C31—H31A99 (6)
P1—C2—H2A106 (5)N1—C31—H31B108 (5)
N2—C2—H2B107 (5)N3—C31—H31B108 (5)
P1—C2—H2B114 (5)H31A—C31—H31B122 (8)
H2A—C2—H2B104 (7)C31—N1—C12110.7 (6)
N3—C3—P1110.8 (5)C31—N1—C1114.0 (5)
N3—C3—H3A112 (6)C12—N1—C1112.6 (6)
P1—C3—H3A109 (6)C23—N2—C12110.4 (6)
N3—C3—H3B106 (6)C23—N2—C2113.9 (5)
P1—C3—H3B110 (6)C12—N2—C2111.2 (6)
H3A—C3—H3B109 (8)C4—N3—C3111.3 (6)
N3—C4—H4A109.5C4—N3—C31108.6 (5)
N3—C4—H4B109.5C3—N3—C31110.7 (6)
H4A—C4—H4B109.5C4—N3—C23108.0 (6)
N3—C4—H4C109.5C3—N3—C23110.4 (6)
H4A—C4—H4C109.5C31—N3—C23107.8 (5)
H4B—C4—H4C109.5O1—P1—C2119.2 (3)
N1—C12—N2112.4 (5)O1—P1—C1119.3 (3)
N1—C12—H12A107 (6)C2—P1—C1101.5 (3)
N2—C12—H12A111 (6)O1—P1—C3112.4 (3)
N1—C12—H12B112 (6)C2—P1—C3100.5 (4)
N2—C12—H12B113 (6)C1—P1—C3100.8 (4)
H12A—C12—H12B100 (9)I3—I1—I2172.41 (2)
N2—C23—N3111.1 (5)
N3—C31—N1—C1257.7 (7)N1—C31—N3—C4−172.0 (6)
N3—C31—N1—C1−70.5 (8)N1—C31—N3—C365.6 (7)
N2—C12—N1—C31−59.3 (8)N1—C31—N3—C23−55.2 (7)
N2—C12—N1—C169.6 (8)N2—C23—N3—C4172.4 (6)
P1—C1—N1—C3165.5 (7)N2—C23—N3—C3−65.7 (7)
P1—C1—N1—C12−61.6 (7)N2—C23—N3—C3155.3 (7)
N3—C23—N2—C12−57.4 (7)N2—C2—P1—O1174.7 (4)
N3—C23—N2—C268.6 (7)N2—C2—P1—C1−52.0 (5)
N1—C12—N2—C2359.1 (7)N2—C2—P1—C351.4 (5)
N1—C12—N2—C2−68.4 (7)N1—C1—P1—O1−175.4 (4)
P1—C2—N2—C23−64.0 (7)N1—C1—P1—C251.3 (6)
P1—C2—N2—C1261.6 (6)N1—C1—P1—C3−51.8 (6)
P1—C3—N3—C4179.9 (5)N3—C3—P1—O1179.9 (5)
P1—C3—N3—C31−59.2 (7)N3—C3—P1—C2−52.2 (6)
P1—C3—N3—C2360.0 (7)N3—C3—P1—C151.8 (6)
D—H···AD—HH···AD···AD—H···A
C23—H23A···O1i0.99 (10)2.26 (11)3.161 (9)150 (9)
C31—H31A···O1i0.97 (10)2.23 (10)3.160 (9)161 (8)
C1—N11.479 (8)
C1—P11.821 (8)
C2—N21.486 (8)
C2—P11.799 (7)
C3—N31.495 (9)
C3—P11.825 (8)
C4—N31.496 (9)
C12—N11.462 (9)
C12—N21.467 (10)
C23—N21.440 (9)
C23—N31.550 (9)
C31—N11.441 (9)
C31—N31.551 (9)
O1—P11.483 (5)
I1—I32.9067 (8)
I1—I22.9127 (7)
I3—I1—I2172.41 (2)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C23—H23A⋯O1i0.99 (10)2.26 (11)3.161 (9)150 (9)
C31—H31A⋯O1i0.97 (10)2.23 (10)3.160 (9)161 (8)

Symmetry code: (i) .

  3 in total

1.  Some 60 new space-group corrections.

Authors:  Richard E Marsh; Moshe Kapon; Shengzhi Hu; Frank H Herbstein
Journal:  Acta Crystallogr B       Date:  2001-01-24

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Water-soluble and stable dinitrogen phosphine complexes trans-[ReCl(N2)(PTA-H)n(PTA)4-n]n+ (n = 0-4), the first with 1,3,5-triaza-7-phosphaadamantane.

Authors:  Piotr Smoleński; Armando J L Pombeiro
Journal:  Dalton Trans       Date:  2008-01-07       Impact factor: 4.390

  3 in total
  1 in total

1.  1-Methyl-1-azonia-3,5-diaza-7-phosphatricyclo-[3.3.1.1]decane tetra-fluoro-borate.

Authors:  Piotr Smoleński; Alexander M Kirillov; M Fátima C Guedes da Silva; Armando J L Pombeiro
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-02-06
  1 in total

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