| Literature DB >> 21201518 |
Alexander M Kirillov, Piotr Smoleński, M Fátima C Guedes da Silva, Armando J L Pombeiro.
Abstract
The title compound, C(7)H(15)N(3)OP(+)·I(3) (-), is a derivative of the well known water-soluble amino-phosphine 1,3,5-triaza-7-phosphaadamantane (PTA). The crystal structure is composed of a cage-like 1-methyl-1-azonia-3,5-diaza-7-phospha-tricyclo-[3.3.1.1]decane 7-oxide cation and a triiodide anion. The N-methyl-ation of the PTA cage results in a slight elongation of the corresponding C-N bonds, while the oxidation of the P atom leads to a slight shortening of the C-P bonds in comparison with those of PTA. In general, most of the bonding parameters are comparable with those reported for related compounds bearing the PTA core. Two inter-molecular C-H⋯O hydrogen bonds between methyl-ene groups and the P=O group are responsible for the linkage of neighbouring cations into linear one-dimensional hydrogen-bonded chains.Entities:
Year: 2008 PMID: 21201518 PMCID: PMC2960408 DOI: 10.1107/S1600536808001426
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C7H15N3OP+·I3– | |
| Monoclinic, | Mo |
| Hall symbol: -P2yn | Cell parameters from 2835 reflections |
| θ = 2.6–27.9º | |
| µ = 6.24 mm−1 | |
| β = 92.472 (7)º | Plate, red |
| 0.13 × 0.10 × 0.10 mm | |
| Bruker SMART CCD area-detector diffractometer | 2789 independent reflections |
| Radiation source: fine-focus sealed tube | 2214 reflections with |
| Monochromator: graphite | |
| θmax = 25.4º | |
| φ and ω scans | θmin = 2.9º |
| Absorption correction: multi-scan(SADABS; Sheldrick, 1996) | |
| 11526 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| | |
| (Δ/σ)max = 0.017 | |
| 2789 reflections | Δρmax = 2.44 e Å−3 |
| 172 parameters | Δρmin = −1.03 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.5522 (9) | 0.4541 (10) | 0.1979 (3) | 0.0186 (16) | |
| C2 | 0.5510 (9) | 0.1132 (8) | 0.1974 (3) | 0.0156 (15) | |
| C3 | 0.5535 (10) | 0.2823 (10) | 0.1042 (3) | 0.0188 (15) | |
| C4 | 0.8586 (11) | 0.2823 (11) | 0.0631 (3) | 0.0294 (18) | |
| H4A | 0.9942 | 0.2819 | 0.0701 | 0.044* | |
| H4B | 0.8230 | 0.3796 | 0.0432 | 0.044* | |
| H4C | 0.8222 | 0.1851 | 0.0432 | 0.044* | |
| C12 | 0.8197 (10) | 0.2815 (10) | 0.2227 (3) | 0.0192 (15) | |
| C23 | 0.8255 (10) | 0.1301 (8) | 0.1442 (3) | 0.0162 (15) | |
| C31 | 0.8255 (10) | 0.4347 (10) | 0.1446 (3) | 0.0192 (16) | |
| N1 | 0.7565 (7) | 0.4292 (7) | 0.1960 (2) | 0.0169 (13) | |
| N2 | 0.7569 (7) | 0.1334 (7) | 0.1956 (2) | 0.0141 (12) | |
| N3 | 0.7614 (8) | 0.2828 (7) | 0.1131 (2) | 0.0168 (12) | |
| O1 | 0.2300 (7) | 0.2825 (7) | 0.1582 (2) | 0.0268 (12) | |
| P1 | 0.4367 (2) | 0.2827 (2) | 0.16547 (7) | 0.0168 (4) | |
| I1 | 0.42016 (7) | 0.78153 (6) | 0.088953 (18) | 0.02270 (15) | |
| I2 | 0.14227 (7) | 0.78170 (6) | 0.16786 (2) | 0.02691 (16) | |
| I3 | 0.73414 (8) | 0.78543 (8) | 0.02143 (2) | 0.03606 (18) | |
| H1A | 0.517 (12) | 0.452 (11) | 0.232 (4) | 0.043* | |
| H1B | 0.498 (12) | 0.558 (11) | 0.183 (3) | 0.043* | |
| H2A | 0.501 (12) | 0.108 (11) | 0.232 (4) | 0.043* | |
| H2B | 0.521 (12) | 0.008 (12) | 0.182 (3) | 0.050* | |
| H3A | 0.512 (14) | 0.190 (12) | 0.084 (4) | 0.060* | |
| H3B | 0.522 (14) | 0.380 (13) | 0.085 (4) | 0.060* | |
| H12A | 0.948 (16) | 0.286 (12) | 0.225 (4) | 0.060* | |
| H12B | 0.793 (14) | 0.282 (11) | 0.256 (4) | 0.050* | |
| H23A | 0.964 (15) | 0.135 (13) | 0.147 (4) | 0.060* | |
| H23B | 0.769 (13) | 0.034 (13) | 0.127 (4) | 0.060* | |
| H31A | 0.959 (14) | 0.414 (12) | 0.147 (4) | 0.060* | |
| H31B | 0.768 (13) | 0.538 (13) | 0.126 (4) | 0.060* |
| C1 | 0.010 (3) | 0.026 (5) | 0.020 (4) | 0.005 (3) | 0.001 (3) | −0.003 (3) |
| C2 | 0.014 (3) | 0.011 (4) | 0.022 (4) | −0.002 (3) | 0.006 (3) | 0.000 (3) |
| C3 | 0.013 (3) | 0.021 (4) | 0.023 (4) | 0.002 (3) | −0.003 (3) | 0.000 (3) |
| C4 | 0.027 (4) | 0.041 (5) | 0.022 (4) | −0.001 (4) | 0.017 (3) | −0.007 (4) |
| C12 | 0.016 (4) | 0.021 (4) | 0.020 (4) | −0.001 (3) | −0.006 (3) | 0.000 (3) |
| C23 | 0.018 (4) | 0.006 (4) | 0.026 (4) | 0.004 (3) | 0.005 (3) | 0.002 (3) |
| C31 | 0.012 (4) | 0.027 (5) | 0.019 (4) | 0.001 (3) | 0.002 (3) | 0.001 (3) |
| N1 | 0.011 (3) | 0.020 (3) | 0.019 (3) | −0.001 (2) | −0.002 (2) | 0.000 (3) |
| N2 | 0.009 (3) | 0.017 (3) | 0.017 (3) | 0.001 (2) | 0.002 (2) | 0.002 (2) |
| N3 | 0.014 (3) | 0.020 (3) | 0.016 (3) | −0.005 (3) | 0.002 (2) | −0.004 (3) |
| O1 | 0.009 (2) | 0.029 (3) | 0.042 (3) | 0.000 (2) | −0.002 (2) | 0.002 (3) |
| P1 | 0.0075 (8) | 0.0187 (9) | 0.0244 (10) | 0.0007 (7) | 0.0003 (7) | −0.0004 (8) |
| I1 | 0.0282 (3) | 0.0183 (3) | 0.0215 (3) | 0.0009 (2) | −0.00114 (19) | −0.0002 (2) |
| I2 | 0.0230 (3) | 0.0207 (3) | 0.0376 (3) | 0.0000 (2) | 0.0081 (2) | 0.0000 (2) |
| I3 | 0.0341 (3) | 0.0527 (4) | 0.0218 (3) | 0.0017 (3) | 0.0054 (2) | −0.0023 (3) |
| C1—N1 | 1.479 (8) | C12—N1 | 1.462 (9) |
| C1—P1 | 1.821 (8) | C12—N2 | 1.467 (10) |
| C1—H1A | 0.94 (9) | C12—H12A | 0.92 (11) |
| C1—H1B | 1.01 (9) | C12—H12B | 0.90 (11) |
| C2—N2 | 1.486 (8) | C23—N2 | 1.440 (9) |
| C2—P1 | 1.799 (7) | C23—N3 | 1.550 (9) |
| C2—H2A | 0.98 (9) | C23—H23A | 0.99 (10) |
| C2—H2B | 0.97 (10) | C23—H23B | 0.99 (10) |
| C3—N3 | 1.495 (9) | C31—N1 | 1.441 (9) |
| C3—P1 | 1.825 (8) | C31—N3 | 1.551 (9) |
| C3—H3A | 0.96 (10) | C31—H31A | 0.97 (10) |
| C3—H3B | 0.96 (11) | C31—H31B | 1.06 (10) |
| C4—N3 | 1.496 (9) | O1—P1 | 1.483 (5) |
| C4—H4A | 0.9800 | I1—I3 | 2.9067 (8) |
| C4—H4B | 0.9800 | I1—I2 | 2.9127 (7) |
| C4—H4C | 0.9800 | ||
| N1—C1—P1 | 107.9 (5) | N2—C23—H23A | 108 (6) |
| N1—C1—H1A | 109 (5) | N3—C23—H23A | 106 (6) |
| P1—C1—H1A | 107 (6) | N2—C23—H23B | 107 (6) |
| N1—C1—H1B | 118 (5) | N3—C23—H23B | 107 (6) |
| P1—C1—H1B | 109 (5) | H23A—C23—H23B | 117 (8) |
| H1A—C1—H1B | 105 (7) | N1—C31—N3 | 110.8 (6) |
| N2—C2—P1 | 109.3 (5) | N1—C31—H31A | 109 (6) |
| N2—C2—H2A | 116 (5) | N3—C31—H31A | 99 (6) |
| P1—C2—H2A | 106 (5) | N1—C31—H31B | 108 (5) |
| N2—C2—H2B | 107 (5) | N3—C31—H31B | 108 (5) |
| P1—C2—H2B | 114 (5) | H31A—C31—H31B | 122 (8) |
| H2A—C2—H2B | 104 (7) | C31—N1—C12 | 110.7 (6) |
| N3—C3—P1 | 110.8 (5) | C31—N1—C1 | 114.0 (5) |
| N3—C3—H3A | 112 (6) | C12—N1—C1 | 112.6 (6) |
| P1—C3—H3A | 109 (6) | C23—N2—C12 | 110.4 (6) |
| N3—C3—H3B | 106 (6) | C23—N2—C2 | 113.9 (5) |
| P1—C3—H3B | 110 (6) | C12—N2—C2 | 111.2 (6) |
| H3A—C3—H3B | 109 (8) | C4—N3—C3 | 111.3 (6) |
| N3—C4—H4A | 109.5 | C4—N3—C31 | 108.6 (5) |
| N3—C4—H4B | 109.5 | C3—N3—C31 | 110.7 (6) |
| H4A—C4—H4B | 109.5 | C4—N3—C23 | 108.0 (6) |
| N3—C4—H4C | 109.5 | C3—N3—C23 | 110.4 (6) |
| H4A—C4—H4C | 109.5 | C31—N3—C23 | 107.8 (5) |
| H4B—C4—H4C | 109.5 | O1—P1—C2 | 119.2 (3) |
| N1—C12—N2 | 112.4 (5) | O1—P1—C1 | 119.3 (3) |
| N1—C12—H12A | 107 (6) | C2—P1—C1 | 101.5 (3) |
| N2—C12—H12A | 111 (6) | O1—P1—C3 | 112.4 (3) |
| N1—C12—H12B | 112 (6) | C2—P1—C3 | 100.5 (4) |
| N2—C12—H12B | 113 (6) | C1—P1—C3 | 100.8 (4) |
| H12A—C12—H12B | 100 (9) | I3—I1—I2 | 172.41 (2) |
| N2—C23—N3 | 111.1 (5) | ||
| N3—C31—N1—C12 | 57.7 (7) | N1—C31—N3—C4 | −172.0 (6) |
| N3—C31—N1—C1 | −70.5 (8) | N1—C31—N3—C3 | 65.6 (7) |
| N2—C12—N1—C31 | −59.3 (8) | N1—C31—N3—C23 | −55.2 (7) |
| N2—C12—N1—C1 | 69.6 (8) | N2—C23—N3—C4 | 172.4 (6) |
| P1—C1—N1—C31 | 65.5 (7) | N2—C23—N3—C3 | −65.7 (7) |
| P1—C1—N1—C12 | −61.6 (7) | N2—C23—N3—C31 | 55.3 (7) |
| N3—C23—N2—C12 | −57.4 (7) | N2—C2—P1—O1 | 174.7 (4) |
| N3—C23—N2—C2 | 68.6 (7) | N2—C2—P1—C1 | −52.0 (5) |
| N1—C12—N2—C23 | 59.1 (7) | N2—C2—P1—C3 | 51.4 (5) |
| N1—C12—N2—C2 | −68.4 (7) | N1—C1—P1—O1 | −175.4 (4) |
| P1—C2—N2—C23 | −64.0 (7) | N1—C1—P1—C2 | 51.3 (6) |
| P1—C2—N2—C12 | 61.6 (6) | N1—C1—P1—C3 | −51.8 (6) |
| P1—C3—N3—C4 | 179.9 (5) | N3—C3—P1—O1 | 179.9 (5) |
| P1—C3—N3—C31 | −59.2 (7) | N3—C3—P1—C2 | −52.2 (6) |
| P1—C3—N3—C23 | 60.0 (7) | N3—C3—P1—C1 | 51.8 (6) |
| H··· | ||||
| C23—H23A···O1i | 0.99 (10) | 2.26 (11) | 3.161 (9) | 150 (9) |
| C31—H31A···O1i | 0.97 (10) | 2.23 (10) | 3.160 (9) | 161 (8) |
| C1—N1 | 1.479 (8) |
| C1—P1 | 1.821 (8) |
| C2—N2 | 1.486 (8) |
| C2—P1 | 1.799 (7) |
| C3—N3 | 1.495 (9) |
| C3—P1 | 1.825 (8) |
| C4—N3 | 1.496 (9) |
| C12—N1 | 1.462 (9) |
| C12—N2 | 1.467 (10) |
| C23—N2 | 1.440 (9) |
| C23—N3 | 1.550 (9) |
| C31—N1 | 1.441 (9) |
| C31—N3 | 1.551 (9) |
| O1—P1 | 1.483 (5) |
| I1—I3 | 2.9067 (8) |
| I1—I2 | 2.9127 (7) |
| I3—I1—I2 | 172.41 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C23—H23 | 0.99 (10) | 2.26 (11) | 3.161 (9) | 150 (9) |
| C31—H31 | 0.97 (10) | 2.23 (10) | 3.160 (9) | 161 (8) |
Symmetry code: (i) .