Literature DB >> 21201770

(Z)-6-{2-[(E)-2,4-Dihydroxy-benzyl-ideneamino]phenyl-amino-methyl-ene}-3-hydroxy-cyclo-hexa-2,4-dienone toluene solvate.

Hoong-Kun Fun, Reza Kia, Valiollah Mirkhani, Hasan Zargoshi.   

Abstract

The bis-Schiff base title compound, C(20)H(16)N(2)O(4)·C(7)H(8), crystallized as a toluene solvate. In the solid state, it is present as its prototropic tautomer formed by transfer of one of the ortho-hydroxyl H atoms. The proton transfer is accompanied by a shift of electron pairs, as is evident from the observed C-O and C-N bond distances of 1.305 (2) and 1.315 (2) Å, which are largely consistent with C=O and C-N distances. The actual mol-ecule present in the solid state is thus the charge-neutral β-keto amine, with a small contribution of its zwitterionic valence tautomer via partial delocalization of electron pairs along the N-C-C-C-O atom chain. The dihedral angles between the central benzene ring and the two outer benzene rings of the Schiff base are 51.99 (8) and 12.95 (9)°. Intra-molecular O-H⋯N and N-H⋯O hydrogen bonds generate S(6) ring motifs, whereas intra-molecular N-H⋯N hydrogen bonds generate S(5) ring motifs. In the crystal structure, O-H⋯O hydrogen bonds and weak C-H⋯O inter-actions link the mol-ecules into one-dimensional zigzag chains along the b axis; these chains are further stacked by O-H⋯O and weak C-H⋯O inter-actions along the c axis, forming two-dimensional extended networks parallel to the bc plane. In addition, the crystal structure is further stabilized by weak C-H⋯π and π-π inter-actions.

Entities:  

Year:  2008        PMID: 21201770      PMCID: PMC2960708          DOI: 10.1107/S1600536808026305

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bond-length data, see: Allen et al. (1987 ▶). For details of hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For related structures, see, for example: Cakir et al. (2002 ▶); Eltayeb et al. (2007a ▶,b ▶); Karabiyik et al. (2007 ▶); Fun, Kargar & Kia (2008 ▶); Fun, Kia & Kargar (2008 ▶); Fun, Mirkhani et al. (2008 ▶). For background on applications of Schiff base ligands, see, for example: Hajioudis et al. (1987 ▶); Granovski et al. (1993 ▶); Dao et al. (2000 ▶); Shahrokhian et al. (2000 ▶); Eltayeb & Ahmed (2005 ▶); Fakhari et al. (2005 ▶); Karthikeyan et al. (2006 ▶); Sriram et al. (2006 ▶). For related literature, see: Fun & Kia (2008 ▶).

Experimental

Crystal data

C20H16N2O4·C7H8 M = 440.48 Monoclinic, a = 11.9753 (3) Å b = 18.8539 (5) Å c = 9.9240 (2) Å β = 108.819 (1)° V = 2120.87 (9) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 100.0 (1) K 0.25 × 0.13 × 0.02 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (; Bruker, 2005 ▶) T min = 0.954, T max = 0.994 24830 measured reflections 6233 independent reflections 4023 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.058 wR(F 2) = 0.163 S = 1.11 6233 reflections 299 parameters H-atom parameters constrained Δρmax = 0.76 e Å−3 Δρmin = −0.32 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: APEX2; data reduction: SAINT (Bruker, 2005 ▶); program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808026305/zl2135sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808026305/zl2135Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H16N2O4·C7H8F000 = 928
Mr = 440.48Dx = 1.380 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5653 reflections
a = 11.9753 (3) Åθ = 2.4–29.6º
b = 18.8539 (5) ŵ = 0.09 mm1
c = 9.9240 (2) ÅT = 100.0 (1) K
β = 108.819 (1)ºPlate, yellow
V = 2120.87 (9) Å30.25 × 0.13 × 0.02 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer6233 independent reflections
Radiation source: fine-focus sealed tube4023 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.039
T = 100.0(1) Kθmax = 30.2º
φ and ω scansθmin = 2.2º
Absorption correction: multi-scan(SADABS; Bruker, 2005)h = −14→16
Tmin = 0.954, Tmax = 0.994k = −20→26
24830 measured reflectionsl = −13→14
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.058H-atom parameters constrained
wR(F2) = 0.163  w = 1/[σ2(Fo2) + (0.0708P)2 + 0.4015P] where P = (Fo2 + 2Fc2)/3
S = 1.11(Δ/σ)max < 0.001
6233 reflectionsΔρmax = 0.76 e Å3
299 parametersΔρmin = −0.32 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Experimental. The low-temperature data was collected with the Oxford Cyrosystem Cobra low-temperature attachment.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.18268 (12)0.42566 (7)0.14400 (14)0.0168 (3)
O30.50774 (11)0.63459 (6)0.61784 (12)0.0214 (3)
H1O30.57240.66080.60440.032*
O10.23309 (11)0.45373 (6)0.41957 (12)0.0225 (3)
H1O10.20530.42700.33490.034*
O40.48126 (11)0.07727 (6)0.62444 (12)0.0217 (3)
H1O40.49990.09950.70960.033*
O20.31282 (10)0.29118 (6)0.39178 (12)0.0187 (3)
N20.17826 (12)0.28136 (7)0.12862 (14)0.0170 (3)
H1N20.21520.30430.20790.025*
C80.11363 (14)0.39346 (9)0.01527 (17)0.0165 (3)
C60.31241 (14)0.51993 (9)0.26313 (17)0.0161 (3)
C150.27803 (14)0.18211 (9)0.26242 (17)0.0165 (3)
C130.10818 (14)0.31889 (9)0.00863 (17)0.0164 (3)
C160.30131 (15)0.10819 (9)0.26262 (18)0.0194 (4)
H16A0.26840.08180.17750.023*
C70.24537 (14)0.48061 (9)0.13868 (17)0.0165 (3)
H7A0.24750.49590.04830.020*
C90.04597 (15)0.43207 (9)−0.10182 (17)0.0193 (4)
H9A0.04870.4824−0.09880.023*
C190.39752 (15)0.18616 (9)0.51268 (17)0.0177 (3)
H19A0.43050.21130.59940.021*
C50.38949 (15)0.57342 (8)0.25065 (17)0.0176 (4)
H5A0.39610.58340.15970.021*
C10.30495 (14)0.50578 (8)0.39969 (17)0.0163 (3)
C170.36973 (15)0.07431 (9)0.38208 (18)0.0198 (4)
H17A0.38530.02500.38040.024*
C180.41709 (15)0.11407 (9)0.50847 (17)0.0176 (3)
C20.36978 (14)0.54490 (9)0.51645 (17)0.0175 (4)
H2A0.36270.53580.60750.021*
C120.03656 (15)0.28533 (9)−0.11326 (17)0.0204 (4)
H12A0.03330.2350−0.11730.024*
C200.32949 (14)0.22283 (9)0.39033 (17)0.0164 (3)
C40.45602 (15)0.61205 (9)0.36648 (17)0.0185 (4)
H4A0.50830.64790.35590.022*
C140.20597 (15)0.21362 (9)0.13726 (17)0.0176 (4)
H14A0.17560.18490.05480.021*
C10−0.02551 (15)0.39818 (10)−0.22315 (18)0.0225 (4)
H10A−0.07140.4253−0.30240.027*
C30.44526 (14)0.59760 (9)0.49988 (17)0.0168 (3)
C11−0.02984 (15)0.32460 (10)−0.22838 (18)0.0231 (4)
H11A−0.07860.3013−0.31140.028*
C230.30310 (18)0.71109 (11)0.7808 (2)0.0329 (5)
H23A0.35830.73840.75230.040*
C250.2145 (2)0.67854 (11)0.9559 (2)0.0352 (5)
H25A0.20930.68301.04900.042*
C260.13983 (19)0.63297 (10)0.8595 (2)0.0314 (5)
H26A0.08220.60730.88670.038*
C220.22868 (18)0.66449 (10)0.6864 (2)0.0293 (4)
H22A0.23390.66040.59320.035*
C210.14696 (17)0.62366 (10)0.7224 (2)0.0292 (4)
C240.29687 (18)0.71778 (11)0.9173 (2)0.0350 (5)
H24A0.34870.74900.98370.042*
C270.0688 (2)0.57353 (12)0.6196 (2)0.0402 (5)
H27A0.11660.53650.59540.060*
H27B0.02420.59920.53310.060*
H27C0.01390.55170.66220.060*
U11U22U33U12U13U23
N10.0194 (7)0.0153 (7)0.0144 (7)0.0009 (6)0.0036 (6)−0.0015 (5)
O30.0251 (7)0.0191 (6)0.0189 (6)−0.0058 (5)0.0056 (5)−0.0025 (5)
O10.0294 (7)0.0215 (7)0.0167 (6)−0.0103 (5)0.0076 (5)−0.0025 (5)
O40.0273 (7)0.0183 (6)0.0174 (6)0.0051 (5)0.0043 (5)0.0029 (5)
O20.0224 (6)0.0131 (6)0.0187 (6)−0.0011 (5)0.0039 (5)−0.0009 (5)
N20.0183 (7)0.0169 (7)0.0137 (7)−0.0029 (6)0.0025 (6)−0.0007 (5)
C80.0163 (8)0.0201 (9)0.0131 (8)−0.0010 (7)0.0048 (6)−0.0024 (6)
C60.0180 (8)0.0144 (8)0.0150 (8)0.0017 (6)0.0040 (6)−0.0004 (6)
C150.0189 (8)0.0162 (8)0.0163 (8)−0.0011 (7)0.0082 (7)−0.0006 (6)
C130.0152 (8)0.0170 (8)0.0172 (8)0.0002 (6)0.0053 (7)0.0015 (6)
C160.0261 (9)0.0173 (9)0.0168 (8)−0.0008 (7)0.0099 (7)−0.0025 (7)
C70.0188 (8)0.0165 (8)0.0139 (8)0.0033 (7)0.0047 (7)0.0005 (6)
C90.0218 (9)0.0181 (9)0.0169 (8)0.0033 (7)0.0047 (7)0.0013 (7)
C190.0196 (8)0.0176 (9)0.0151 (8)−0.0014 (7)0.0044 (7)−0.0009 (6)
C50.0212 (9)0.0157 (8)0.0168 (8)0.0027 (7)0.0073 (7)0.0031 (6)
C10.0180 (8)0.0133 (8)0.0174 (8)0.0012 (6)0.0055 (7)0.0008 (6)
C170.0259 (9)0.0148 (8)0.0214 (9)0.0022 (7)0.0115 (7)0.0005 (7)
C180.0179 (8)0.0186 (9)0.0177 (8)0.0022 (7)0.0077 (7)0.0034 (7)
C20.0206 (9)0.0162 (8)0.0156 (8)0.0005 (7)0.0059 (7)−0.0002 (6)
C120.0195 (9)0.0194 (9)0.0205 (9)−0.0045 (7)0.0041 (7)−0.0035 (7)
C200.0163 (8)0.0161 (8)0.0182 (8)−0.0010 (6)0.0074 (7)0.0003 (6)
C40.0202 (9)0.0143 (8)0.0207 (9)−0.0003 (7)0.0062 (7)0.0011 (7)
C140.0214 (9)0.0156 (8)0.0167 (8)−0.0025 (7)0.0074 (7)−0.0007 (6)
C100.0197 (9)0.0285 (10)0.0159 (8)0.0037 (7)0.0012 (7)0.0014 (7)
C30.0179 (8)0.0142 (8)0.0164 (8)0.0008 (6)0.0028 (7)−0.0034 (6)
C110.0197 (9)0.0291 (10)0.0168 (9)−0.0014 (8)0.0009 (7)−0.0037 (7)
C230.0296 (11)0.0343 (12)0.0362 (12)0.0008 (9)0.0124 (9)0.0017 (9)
C250.0458 (13)0.0309 (11)0.0313 (11)0.0098 (10)0.0158 (10)0.0044 (9)
C260.0341 (11)0.0258 (11)0.0402 (12)0.0053 (9)0.0201 (10)0.0106 (9)
C220.0307 (11)0.0280 (10)0.0316 (11)0.0033 (9)0.0134 (9)0.0029 (8)
C210.0292 (10)0.0275 (10)0.0311 (11)0.0057 (8)0.0101 (9)0.0055 (8)
C240.0330 (11)0.0363 (12)0.0336 (11)0.0063 (9)0.0076 (9)−0.0001 (9)
C270.0429 (13)0.0380 (13)0.0415 (13)−0.0042 (10)0.0161 (11)0.0008 (10)
N1—C71.290 (2)C5—H5A0.9500
N1—C81.415 (2)C1—C21.382 (2)
O3—C31.3608 (19)C17—C181.413 (2)
O3—H1O30.9628C17—H17A0.9500
O1—C11.3608 (19)C2—C31.388 (2)
O1—H1O10.9431C2—H2A0.9500
O4—C181.3513 (19)C12—C111.378 (2)
O4—H1O40.9048C12—H12A0.9500
O2—C201.3048 (19)C4—C31.398 (2)
N2—C141.315 (2)C4—H4A0.9500
N2—C131.406 (2)C14—H14A0.9500
N2—H1N20.8816C10—C111.389 (3)
C8—C91.389 (2)C10—H10A0.9500
C8—C131.408 (2)C11—H11A0.9500
C6—C51.399 (2)C23—C221.380 (3)
C6—C11.412 (2)C23—C241.387 (3)
C6—C71.442 (2)C23—H23A0.9500
C15—C141.396 (2)C25—C261.379 (3)
C15—C161.421 (2)C25—C241.382 (3)
C15—C201.441 (2)C25—H25A0.9500
C13—C121.389 (2)C26—C211.402 (3)
C16—C171.363 (2)C26—H26A0.9500
C16—H16A0.9500C22—C211.380 (3)
C7—H7A0.9500C22—H22A0.9500
C9—C101.388 (2)C21—C271.482 (3)
C9—H9A0.9500C24—H24A0.9500
C19—C181.382 (2)C27—H27A0.9800
C19—C201.406 (2)C27—H27B0.9800
C19—H19A0.9500C27—H27C0.9800
C5—C41.377 (2)
Cg1···Cg1i3.7867 (1)Cg2···Cg3ii4.5626 (3)
C7—N1—C8119.05 (14)C11—C12—C13120.40 (16)
C3—O3—H1O3112.8C11—C12—H12A119.8
C1—O1—H1O1108.3C13—C12—H12A119.8
C18—O4—H1O4117.3O2—C20—C19121.60 (15)
C14—N2—C13127.78 (14)O2—C20—C15120.84 (15)
C14—N2—H1N2112.0C19—C20—C15117.56 (15)
C13—N2—H1N2120.0C5—C4—C3118.85 (15)
C9—C8—C13118.59 (15)C5—C4—H4A120.6
C9—C8—N1122.94 (15)C3—C4—H4A120.6
C13—C8—N1118.38 (14)N2—C14—C15122.80 (15)
C5—C6—C1117.97 (15)N2—C14—H14A118.6
C5—C6—C7119.71 (14)C15—C14—H14A118.6
C1—C6—C7122.32 (15)C9—C10—C11119.84 (16)
C14—C15—C16118.90 (15)C9—C10—H10A120.1
C14—C15—C20121.53 (15)C11—C10—H10A120.1
C16—C15—C20119.57 (15)O3—C3—C2117.60 (14)
C12—C13—N2122.70 (15)O3—C3—C4121.45 (15)
C12—C13—C8120.12 (15)C2—C3—C4120.95 (15)
N2—C13—C8117.18 (14)C12—C11—C10120.08 (16)
C17—C16—C15121.56 (15)C12—C11—H11A120.0
C17—C16—H16A119.2C10—C11—H11A120.0
C15—C16—H16A119.2C22—C23—C24119.6 (2)
N1—C7—C6123.24 (15)C22—C23—H23A120.2
N1—C7—H7A118.4C24—C23—H23A120.2
C6—C7—H7A118.4C26—C25—C24120.16 (19)
C10—C9—C8120.97 (16)C26—C25—H25A119.9
C10—C9—H9A119.5C24—C25—H25A119.9
C8—C9—H9A119.5C25—C26—C21121.50 (19)
C18—C19—C20120.93 (15)C25—C26—H26A119.3
C18—C19—H19A119.5C21—C26—H26A119.3
C20—C19—H19A119.5C21—C22—C23122.41 (19)
C4—C5—C6121.86 (15)C21—C22—H22A118.8
C4—C5—H5A119.1C23—C22—H22A118.8
C6—C5—H5A119.1C22—C21—C26116.88 (19)
O1—C1—C2118.28 (14)C22—C21—C27121.39 (18)
O1—C1—C6120.95 (14)C26—C21—C27121.72 (19)
C2—C1—C6120.77 (15)C25—C24—C23119.4 (2)
C16—C17—C18118.67 (16)C25—C24—H24A120.3
C16—C17—H17A120.7C23—C24—H24A120.3
C18—C17—H17A120.7C21—C27—H27A109.5
O4—C18—C19122.31 (15)C21—C27—H27B109.5
O4—C18—C17116.02 (15)H27A—C27—H27B109.5
C19—C18—C17121.66 (15)C21—C27—H27C109.5
C1—C2—C3119.59 (15)H27A—C27—H27C109.5
C1—C2—H2A120.2H27B—C27—H27C109.5
C3—C2—H2A120.2
C7—N1—C8—C9−43.9 (2)N2—C13—C12—C11−179.57 (15)
C7—N1—C8—C13139.83 (16)C8—C13—C12—C11−0.2 (2)
C14—N2—C13—C1214.2 (3)C18—C19—C20—O2−178.20 (15)
C14—N2—C13—C8−165.19 (16)C18—C19—C20—C152.0 (2)
C9—C8—C13—C120.2 (2)C14—C15—C20—O2−2.0 (2)
N1—C8—C13—C12176.67 (14)C16—C15—C20—O2177.67 (15)
C9—C8—C13—N2179.64 (14)C14—C15—C20—C19177.82 (15)
N1—C8—C13—N2−3.9 (2)C16—C15—C20—C19−2.5 (2)
C14—C15—C16—C17−179.13 (15)C6—C5—C4—C3−0.5 (2)
C20—C15—C16—C171.2 (2)C13—N2—C14—C15179.10 (15)
C8—N1—C7—C6175.76 (15)C16—C15—C14—N2178.73 (15)
C5—C6—C7—N1172.13 (15)C20—C15—C14—N2−1.6 (2)
C1—C6—C7—N1−6.8 (3)C8—C9—C10—C11−0.1 (3)
C13—C8—C9—C10−0.1 (2)C1—C2—C3—O3−179.73 (14)
N1—C8—C9—C10−176.39 (15)C1—C2—C3—C40.5 (2)
C1—C6—C5—C4−0.5 (2)C5—C4—C3—O3−179.24 (15)
C7—C6—C5—C4−179.50 (15)C5—C4—C3—C20.5 (2)
C5—C6—C1—O1−178.99 (14)C13—C12—C11—C100.0 (3)
C7—C6—C1—O10.0 (2)C9—C10—C11—C120.1 (3)
C5—C6—C1—C21.6 (2)C24—C25—C26—C211.7 (3)
C7—C6—C1—C2−179.48 (15)C24—C23—C22—C210.1 (3)
C15—C16—C17—C180.7 (2)C23—C22—C21—C261.9 (3)
C20—C19—C18—O4−179.47 (15)C23—C22—C21—C27−179.43 (19)
C20—C19—C18—C17−0.1 (2)C25—C26—C21—C22−2.7 (3)
C16—C17—C18—O4178.10 (14)C25—C26—C21—C27178.57 (19)
C16—C17—C18—C19−1.3 (2)C26—C25—C24—C230.4 (3)
O1—C1—C2—C3178.99 (15)C22—C23—C24—C25−1.2 (3)
C6—C1—C2—C3−1.6 (2)
D—H···AD—HH···AD···AD—H···A
O1—H1O1···N10.941.832.6568 (17)145
O3—H1O3···O2i0.961.642.5919 (18)171
O4—H1O4···O3iii0.901.872.7403 (16)162
N2—H1N2···O20.881.842.5954 (18)143
N2—H1N2···N10.882.372.7245 (19)104
C16—H16A···O1iv0.952.553.439 (2)157
C17—H17A···O4v0.952.513.381 (2)152
C11—H11A···Cg4vi0.952.973.619 (2)126
Table 1

Selected centroid⋯centroid distances (Å)

Cg1⋯Cg1i3.7867 (1)
Cg2⋯Cg3ii4.5626 (3)

Symmetry codes: (i) ; (ii) . Cg1, Cg2, and Cg3 are the centroids of the C1–C6, C8–C13 and C15–C20 benzene rings, respectively.

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1O1⋯N10.941.832.6568 (17)145
O3—H1O3⋯O2i0.961.642.5919 (18)171
O4—H1O4⋯O3iii0.901.872.7403 (16)162
N2—H1N2⋯O20.881.842.5954 (18)143
N2—H1N2⋯N10.882.372.7245 (19)104
C16—H16A⋯O1iv0.952.553.439 (2)157
C17—H17A⋯O4v0.952.513.381 (2)152
C11—H11ACg4vi0.952.973.619 (2)126

Symmetry codes: (i) ; (iii) ; (iv) ; (v) ; (vi) . Cg4 is the centroid of the C21–C26 benzene ring.

  13 in total

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Authors:  Oznur Cakir; Yalin Elerman; Ayhan Elmali
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Authors:  V T Dao; C Gaspard; M Mayer; G H Werner; S N Nguyen; R J Michelot
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Authors:  Hoong-Kun Fun; Reza Kia; Hadi Kargar
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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-12
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  1 in total

1.  (E)-2-{[(2-Amino-phen-yl)imino]-meth-yl}-5-(benz-yl-oxy)phenol and (Z)-3-benz-yl-oxy-6-{[(5-chloro-2-hy-droxy-phen-yl)amino]-methyl-idene}cyclo-hexa-2,4-dien-1-one.

Authors:  Nadir Ghichi; Ali Benboudiaf; Chawki Bensouici; Yacine DJebli; Hocine Merazig
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  1 in total

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