| Literature DB >> 21201706 |
Abstract
The mol-ecule of the title Schiff base compound, C(18)H(12)Cl(2)F(6)N(2), adopts an E configuration with respect to the azomethine C=N bond. Intra-molecular C-H⋯F (× 2) and C-H⋯Cl (× 2) hydrogen bonds generate S(5) ring motifs. The imino group is coplanar with the aromatic ring. Within the mol-ecule, the planar units are parallel, but extend in opposite directions from the methyl-ene bridge, as indicated by the dihedral angle between the two benzene rings of 3.74 (6)°. The inter-esting features of the crystal structure are weak inter-molecular Cl⋯N and F⋯F inter-actions, with distances of 2.9192 (11) and 3.2714 (10) Å, respectively, which are shorter than the sum of the van der Waals radii of the relevent atoms. These inter-actions link neighbouring mol-ecules into dimers which are stacked down the b axis.Entities:
Year: 2008 PMID: 21201706 PMCID: PMC2960650 DOI: 10.1107/S1600536808024926
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C18H12Cl2F6N2 | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 9825 reflections |
| θ = 3.0–34.6º | |
| µ = 0.43 mm−1 | |
| β = 127.851 (2)º | Block, colourless |
| 0.59 × 0.27 × 0.15 mm | |
| Bruker SMART APEXII CCD area-detector diffractometer | 7964 independent reflections |
| Radiation source: fine-focus sealed tube | 6400 reflections with |
| Monochromator: graphite | |
| θmax = 35.3º | |
| φ and ω scans | θmin = 1.4º |
| Absorption correction: multi-scan(SADABS; Bruker, 2005) | |
| 61787 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| | |
| (Δ/σ)max = 0.002 | |
| 7964 reflections | Δρmax = 0.49 e Å−3 |
| 253 parameters | Δρmin = −0.40 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| Experimental. The low-temperature data was collected with the Oxford Cyrosystem Cobra low-temperature attachment. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cl1 | 0.551363 (9) | 0.32741 (7) | 0.739234 (12) | 0.02594 (7) | |
| Cl2 | 0.189897 (9) | 1.19679 (7) | 0.533622 (12) | 0.02472 (7) | |
| F1 | 0.39316 (3) | −0.30228 (17) | 0.46809 (3) | 0.02702 (15) | |
| F2 | 0.41420 (3) | 0.04201 (17) | 0.43779 (3) | 0.03119 (17) | |
| F3 | 0.45421 (3) | −0.34947 (19) | 0.47055 (4) | 0.03439 (19) | |
| F4 | 0.33072 (3) | 1.47263 (18) | 0.83440 (3) | 0.02871 (16) | |
| F5 | 0.38418 (2) | 1.47751 (19) | 0.82146 (3) | 0.03130 (18) | |
| F6 | 0.34376 (3) | 1.85581 (16) | 0.80395 (4) | 0.03396 (19) | |
| N1 | 0.40343 (3) | 0.5481 (2) | 0.59973 (4) | 0.01725 (16) | |
| N2 | 0.33501 (3) | 0.8779 (2) | 0.64593 (4) | 0.01823 (16) | |
| C1 | 0.51574 (3) | 0.1868 (2) | 0.66416 (5) | 0.01730 (17) | |
| C2 | 0.53549 (4) | −0.0190 (2) | 0.64928 (5) | 0.02017 (19) | |
| H2A | 0.5667 | −0.0777 | 0.6791 | 0.024* | |
| C3 | 0.50850 (4) | −0.1361 (2) | 0.58984 (5) | 0.01883 (18) | |
| H3A | 0.5214 | −0.2733 | 0.5793 | 0.023* | |
| C4 | 0.46179 (3) | −0.0459 (2) | 0.54599 (5) | 0.01615 (17) | |
| C5 | 0.44222 (3) | 0.1577 (2) | 0.56131 (5) | 0.01572 (17) | |
| H5A | 0.4109 | 0.2140 | 0.5315 | 0.019* | |
| C6 | 0.46882 (3) | 0.2794 (2) | 0.62082 (5) | 0.01529 (16) | |
| C7 | 0.44777 (3) | 0.5018 (2) | 0.63563 (5) | 0.01595 (17) | |
| H7A | 0.4673 | 0.6098 | 0.6719 | 0.019* | |
| C8 | 0.38645 (4) | 0.7774 (2) | 0.61797 (5) | 0.01833 (18) | |
| H8A | 0.3757 | 0.9376 | 0.5894 | 0.022* | |
| H8B | 0.4121 | 0.8436 | 0.6597 | 0.022* | |
| C9 | 0.34569 (4) | 0.6674 (2) | 0.61674 (5) | 0.01850 (18) | |
| H9A | 0.3179 | 0.6351 | 0.5739 | 0.022* | |
| H9B | 0.3545 | 0.4869 | 0.6391 | 0.022* | |
| C10 | 0.29330 (3) | 0.9775 (2) | 0.61435 (5) | 0.01680 (17) | |
| H10A | 0.2705 | 0.9146 | 0.5736 | 0.020* | |
| C11 | 0.28058 (3) | 1.1927 (2) | 0.64174 (5) | 0.01518 (16) | |
| C12 | 0.23492 (3) | 1.3059 (2) | 0.60942 (5) | 0.01720 (17) | |
| C13 | 0.22371 (4) | 1.5054 (2) | 0.63682 (5) | 0.02008 (19) | |
| H13A | 0.1932 | 1.5794 | 0.6144 | 0.024* | |
| C14 | 0.25840 (4) | 1.5922 (2) | 0.69772 (5) | 0.01877 (18) | |
| H14A | 0.2512 | 1.7238 | 0.7166 | 0.023* | |
| C15 | 0.30421 (3) | 1.4814 (2) | 0.73076 (5) | 0.01553 (16) | |
| C16 | 0.31517 (3) | 1.2865 (2) | 0.70305 (5) | 0.01529 (16) | |
| H16A | 0.3459 | 1.2166 | 0.7254 | 0.018* | |
| C17 | 0.43124 (4) | −0.1644 (2) | 0.48093 (5) | 0.01965 (19) | |
| C18 | 0.34081 (4) | 1.5713 (2) | 0.79726 (5) | 0.01786 (18) |
| Cl1 | 0.01659 (11) | 0.03460 (15) | 0.01714 (11) | 0.00362 (10) | 0.00552 (9) | −0.00367 (10) |
| Cl2 | 0.01410 (11) | 0.03396 (15) | 0.01727 (11) | 0.00410 (9) | 0.00514 (9) | −0.00528 (10) |
| F1 | 0.0227 (3) | 0.0324 (4) | 0.0215 (3) | −0.0075 (3) | 0.0113 (3) | −0.0041 (3) |
| F2 | 0.0443 (4) | 0.0263 (4) | 0.0198 (3) | 0.0003 (3) | 0.0181 (3) | 0.0034 (3) |
| F3 | 0.0314 (4) | 0.0401 (5) | 0.0311 (4) | 0.0075 (3) | 0.0189 (3) | −0.0113 (3) |
| F4 | 0.0281 (4) | 0.0420 (4) | 0.0175 (3) | −0.0100 (3) | 0.0147 (3) | −0.0003 (3) |
| F5 | 0.0142 (3) | 0.0474 (5) | 0.0236 (3) | −0.0012 (3) | 0.0072 (3) | −0.0106 (3) |
| F6 | 0.0474 (5) | 0.0173 (3) | 0.0210 (3) | −0.0056 (3) | 0.0127 (3) | −0.0035 (3) |
| N1 | 0.0159 (4) | 0.0195 (4) | 0.0181 (4) | 0.0028 (3) | 0.0113 (3) | 0.0004 (3) |
| N2 | 0.0155 (4) | 0.0207 (4) | 0.0203 (4) | 0.0015 (3) | 0.0119 (3) | −0.0020 (3) |
| C1 | 0.0134 (4) | 0.0203 (4) | 0.0162 (4) | 0.0010 (3) | 0.0081 (3) | 0.0004 (3) |
| C2 | 0.0133 (4) | 0.0225 (5) | 0.0226 (5) | 0.0040 (3) | 0.0099 (4) | 0.0018 (4) |
| C3 | 0.0173 (4) | 0.0184 (4) | 0.0241 (5) | 0.0029 (3) | 0.0144 (4) | 0.0005 (4) |
| C4 | 0.0154 (4) | 0.0172 (4) | 0.0178 (4) | 0.0009 (3) | 0.0111 (3) | 0.0005 (3) |
| C5 | 0.0141 (4) | 0.0172 (4) | 0.0169 (4) | 0.0020 (3) | 0.0101 (3) | 0.0014 (3) |
| C6 | 0.0128 (4) | 0.0171 (4) | 0.0167 (4) | 0.0017 (3) | 0.0094 (3) | 0.0012 (3) |
| C7 | 0.0158 (4) | 0.0166 (4) | 0.0172 (4) | 0.0011 (3) | 0.0110 (3) | 0.0003 (3) |
| C8 | 0.0186 (4) | 0.0171 (4) | 0.0233 (5) | 0.0024 (3) | 0.0149 (4) | −0.0002 (3) |
| C9 | 0.0155 (4) | 0.0200 (4) | 0.0217 (4) | 0.0007 (3) | 0.0122 (4) | −0.0031 (4) |
| C10 | 0.0145 (4) | 0.0192 (4) | 0.0167 (4) | 0.0002 (3) | 0.0096 (3) | −0.0019 (3) |
| C11 | 0.0132 (4) | 0.0166 (4) | 0.0164 (4) | 0.0012 (3) | 0.0094 (3) | 0.0000 (3) |
| C12 | 0.0127 (4) | 0.0208 (4) | 0.0152 (4) | 0.0011 (3) | 0.0071 (3) | −0.0012 (3) |
| C13 | 0.0147 (4) | 0.0240 (5) | 0.0197 (4) | 0.0040 (4) | 0.0096 (4) | −0.0012 (4) |
| C14 | 0.0174 (4) | 0.0199 (4) | 0.0202 (4) | 0.0022 (4) | 0.0122 (4) | −0.0013 (4) |
| C15 | 0.0152 (4) | 0.0158 (4) | 0.0158 (4) | −0.0007 (3) | 0.0096 (3) | −0.0002 (3) |
| C16 | 0.0131 (4) | 0.0168 (4) | 0.0163 (4) | 0.0005 (3) | 0.0091 (3) | 0.0002 (3) |
| C17 | 0.0212 (4) | 0.0203 (5) | 0.0195 (4) | 0.0018 (4) | 0.0135 (4) | −0.0005 (4) |
| C18 | 0.0181 (4) | 0.0184 (4) | 0.0174 (4) | −0.0021 (3) | 0.0110 (4) | −0.0008 (3) |
| Cl1—C1 | 1.7362 (11) | C5—H5A | 0.9300 |
| Cl2—C12 | 1.7358 (10) | C6—C7 | 1.4746 (14) |
| F1—C17 | 1.3433 (13) | C7—H7A | 0.9300 |
| F2—C17 | 1.3389 (13) | C8—C9 | 1.5253 (15) |
| F3—C17 | 1.3348 (13) | C8—H8A | 0.9700 |
| F4—C18 | 1.3419 (12) | C8—H8B | 0.9700 |
| F5—C18 | 1.3325 (13) | C9—H9A | 0.9700 |
| F6—C18 | 1.3354 (13) | C9—H9B | 0.9700 |
| N1—C7 | 1.2693 (13) | C10—C11 | 1.4771 (14) |
| N1—C8 | 1.4580 (13) | C10—H10A | 0.9300 |
| N2—C10 | 1.2663 (13) | C11—C12 | 1.3977 (14) |
| N2—C9 | 1.4517 (13) | C11—C16 | 1.4004 (14) |
| C1—C2 | 1.3901 (15) | C12—C13 | 1.3944 (14) |
| C1—C6 | 1.4000 (14) | C13—C14 | 1.3839 (15) |
| C2—C3 | 1.3853 (15) | C13—H13A | 0.9300 |
| C2—H2A | 0.9300 | C14—C15 | 1.3963 (14) |
| C3—C4 | 1.3933 (14) | C14—H14A | 0.9300 |
| C3—H3A | 0.9300 | C15—C16 | 1.3803 (14) |
| C4—C5 | 1.3858 (14) | C15—C18 | 1.4979 (14) |
| C4—C17 | 1.4989 (15) | C16—H16A | 0.9300 |
| C5—C6 | 1.3955 (14) | ||
| Cl···Ni | 3.2714 (10) | F···Fii | 2.9192 (11) |
| C7—N1—C8 | 116.62 (9) | H9A—C9—H9B | 108.3 |
| C10—N2—C9 | 118.26 (9) | N2—C10—C11 | 120.47 (9) |
| C2—C1—C6 | 121.96 (9) | N2—C10—H10A | 119.8 |
| C2—C1—Cl1 | 117.63 (8) | C11—C10—H10A | 119.8 |
| C6—C1—Cl1 | 120.41 (8) | C12—C11—C16 | 117.82 (9) |
| C3—C2—C1 | 119.69 (9) | C12—C11—C10 | 122.86 (9) |
| C3—C2—H2A | 120.2 | C16—C11—C10 | 119.32 (9) |
| C1—C2—H2A | 120.2 | C13—C12—C11 | 121.63 (9) |
| C2—C3—C4 | 119.18 (9) | C13—C12—Cl2 | 117.78 (8) |
| C2—C3—H3A | 120.4 | C11—C12—Cl2 | 120.58 (8) |
| C4—C3—H3A | 120.4 | C14—C13—C12 | 119.43 (9) |
| C5—C4—C3 | 120.80 (9) | C14—C13—H13A | 120.3 |
| C5—C4—C17 | 117.96 (9) | C12—C13—H13A | 120.3 |
| C3—C4—C17 | 121.24 (9) | C13—C14—C15 | 119.74 (9) |
| C4—C5—C6 | 120.96 (9) | C13—C14—H14A | 120.1 |
| C4—C5—H5A | 119.5 | C15—C14—H14A | 120.1 |
| C6—C5—H5A | 119.5 | C16—C15—C14 | 120.47 (9) |
| C5—C6—C1 | 117.39 (9) | C16—C15—C18 | 120.66 (9) |
| C5—C6—C7 | 120.12 (9) | C14—C15—C18 | 118.84 (9) |
| C1—C6—C7 | 122.47 (9) | C15—C16—C11 | 120.89 (9) |
| N1—C7—C6 | 121.08 (9) | C15—C16—H16A | 119.6 |
| N1—C7—H7A | 119.5 | C11—C16—H16A | 119.6 |
| C6—C7—H7A | 119.5 | F3—C17—F2 | 106.87 (9) |
| N1—C8—C9 | 109.64 (9) | F3—C17—F1 | 106.95 (9) |
| N1—C8—H8A | 109.7 | F2—C17—F1 | 105.83 (9) |
| C9—C8—H8A | 109.7 | F3—C17—C4 | 112.89 (9) |
| N1—C8—H8B | 109.7 | F2—C17—C4 | 112.02 (9) |
| C9—C8—H8B | 109.7 | F1—C17—C4 | 111.84 (8) |
| H8A—C8—H8B | 108.2 | F5—C18—F6 | 106.77 (9) |
| N2—C9—C8 | 109.09 (9) | F5—C18—F4 | 106.53 (9) |
| N2—C9—H9A | 109.9 | F6—C18—F4 | 105.93 (9) |
| C8—C9—H9A | 109.9 | F5—C18—C15 | 113.15 (9) |
| N2—C9—H9B | 109.9 | F6—C18—C15 | 112.32 (9) |
| C8—C9—H9B | 109.9 | F4—C18—C15 | 111.66 (9) |
| C6—C1—C2—C3 | 0.55 (17) | C16—C11—C12—Cl2 | −179.14 (8) |
| Cl1—C1—C2—C3 | −179.64 (9) | C10—C11—C12—Cl2 | −0.15 (15) |
| C1—C2—C3—C4 | −0.30 (16) | C11—C12—C13—C14 | −0.63 (17) |
| C2—C3—C4—C5 | −0.22 (16) | Cl2—C12—C13—C14 | 178.44 (9) |
| C2—C3—C4—C17 | 179.54 (10) | C12—C13—C14—C15 | 0.58 (17) |
| C3—C4—C5—C6 | 0.51 (15) | C13—C14—C15—C16 | 0.18 (16) |
| C17—C4—C5—C6 | −179.26 (9) | C13—C14—C15—C18 | −178.10 (10) |
| C4—C5—C6—C1 | −0.27 (15) | C14—C15—C16—C11 | −0.92 (15) |
| C4—C5—C6—C7 | 178.24 (9) | C18—C15—C16—C11 | 177.33 (9) |
| C2—C1—C6—C5 | −0.26 (15) | C12—C11—C16—C15 | 0.86 (15) |
| Cl1—C1—C6—C5 | 179.93 (8) | C10—C11—C16—C15 | −178.16 (9) |
| C2—C1—C6—C7 | −178.73 (10) | C5—C4—C17—F3 | 177.37 (9) |
| Cl1—C1—C6—C7 | 1.46 (14) | C3—C4—C17—F3 | −2.39 (15) |
| C8—N1—C7—C6 | −178.56 (9) | C5—C4—C17—F2 | 56.68 (13) |
| C5—C6—C7—N1 | 13.43 (15) | C3—C4—C17—F2 | −123.09 (11) |
| C1—C6—C7—N1 | −168.13 (10) | C5—C4—C17—F1 | −61.95 (13) |
| C7—N1—C8—C9 | −129.40 (10) | C3—C4—C17—F1 | 118.28 (11) |
| C10—N2—C9—C8 | 122.57 (11) | C16—C15—C18—F5 | 8.87 (14) |
| N1—C8—C9—N2 | 169.41 (8) | C14—C15—C18—F5 | −172.85 (10) |
| C9—N2—C10—C11 | −179.84 (9) | C16—C15—C18—F6 | 129.85 (11) |
| N2—C10—C11—C12 | −178.81 (10) | C14—C15—C18—F6 | −51.87 (13) |
| N2—C10—C11—C16 | 0.17 (15) | C16—C15—C18—F4 | −111.31 (11) |
| C16—C11—C12—C13 | −0.09 (16) | C14—C15—C18—F4 | 66.97 (13) |
| C10—C11—C12—C13 | 178.90 (10) |
| H··· | ||||
| C3—H3A···F3 | 0.93 | 2.43 | 2.7415 (14) | 100 |
| C7—H7A···Cl1 | 0.93 | 2.71 | 3.0811 (12) | 105 |
| C10—H10A···Cl2 | 0.93 | 2.72 | 3.0925 (13) | 105 |
| C16—H16A···F5 | 0.93 | 2.40 | 2.7325 (13) | 101 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C3—H3 | 0.93 | 2.43 | 2.7415 (14) | 100 |
| C7—H7 | 0.93 | 2.71 | 3.0811 (12) | 105 |
| C10—H10 | 0.93 | 2.72 | 3.0925 (13) | 105 |
| C16—H16 | 0.93 | 2.40 | 2.7325 (13) | 101 |
Symmetry codes: .