Literature DB >> 21201706

N,N'-Bis[2-chloro-5-(trifluoro-meth-yl)benzyl-idene]ethane-1,2-diamine.

Hoong-Kun Fun1, Reza Kia.   

Abstract

The mol-ecule of the title Schiff base compound, C(18)H(12)Cl(2)F(6)N(2), adopts an E configuration with respect to the azomethine C=N bond. Intra-molecular C-H⋯F (× 2) and C-H⋯Cl (× 2) hydrogen bonds generate S(5) ring motifs. The imino group is coplanar with the aromatic ring. Within the mol-ecule, the planar units are parallel, but extend in opposite directions from the methyl-ene bridge, as indicated by the dihedral angle between the two benzene rings of 3.74 (6)°. The inter-esting features of the crystal structure are weak inter-molecular Cl⋯N and F⋯F inter-actions, with distances of 2.9192 (11) and 3.2714 (10) Å, respectively, which are shorter than the sum of the van der Waals radii of the relevent atoms. These inter-actions link neighbouring mol-ecules into dimers which are stacked down the b axis.

Entities:  

Year:  2008        PMID: 21201706      PMCID: PMC2960650          DOI: 10.1107/S1600536808024926

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bond-length data, see: Allen et al. (1987 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For related structures see, for example: see, for example: Fun, Kargar & Kia (2008 ▶); Fun, Kia & Kargar (2008 ▶); Fun, Mirkhani et al. (2008 ▶); Calligaris & Randaccio (1987 ▶). For information on Schiff base complexes and their applications, see, for example: Kia, Mirkhani, Kalman & Deak (2007 ▶); Kia, Mirkhani, Harkema & van Hummel (2007 ▶); Pal et al. (2005 ▶); Hou et al. (2001 ▶); Ren et al. (2002 ▶).

Experimental

Crystal data

C18H12Cl2F6N2 M = 441.20 Monoclinic, a = 35.7299 (8) Å b = 4.6663 (1) Å c = 27.1134 (6) Å β = 127.851 (2)° V = 3569.44 (17) Å3 Z = 8 Mo Kα radiation μ = 0.43 mm−1 T = 100.0 (1) K 0.59 × 0.27 × 0.15 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.786, T max = 0.938 61787 measured reflections 7964 independent reflections 6400 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.111 S = 1.10 7964 reflections 253 parameters H-atom parameters constrained Δρmax = 0.49 e Å−3 Δρmin = −0.40 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: APEX2; data reduction: SAINT (Bruker, 2005 ▶); program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808024926/at2608sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808024926/at2608Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H12Cl2F6N2F000 = 1776
Mr = 441.20Dx = 1.642 Mg m3
Monoclinic, C2/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 9825 reflections
a = 35.7299 (8) Åθ = 3.0–34.6º
b = 4.6663 (1) ŵ = 0.43 mm1
c = 27.1134 (6) ÅT = 100.0 (1) K
β = 127.851 (2)ºBlock, colourless
V = 3569.44 (17) Å30.59 × 0.27 × 0.15 mm
Z = 8
Bruker SMART APEXII CCD area-detector diffractometer7964 independent reflections
Radiation source: fine-focus sealed tube6400 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.037
T = 100.0(1) Kθmax = 35.3º
φ and ω scansθmin = 1.4º
Absorption correction: multi-scan(SADABS; Bruker, 2005)h = −57→57
Tmin = 0.786, Tmax = 0.938k = −7→7
61787 measured reflectionsl = −43→43
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.039H-atom parameters constrained
wR(F2) = 0.111  w = 1/[σ2(Fo2) + (0.0531P)2 + 1.9844P] where P = (Fo2 + 2Fc2)/3
S = 1.10(Δ/σ)max = 0.002
7964 reflectionsΔρmax = 0.49 e Å3
253 parametersΔρmin = −0.40 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Experimental. The low-temperature data was collected with the Oxford Cyrosystem Cobra low-temperature attachment.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.551363 (9)0.32741 (7)0.739234 (12)0.02594 (7)
Cl20.189897 (9)1.19679 (7)0.533622 (12)0.02472 (7)
F10.39316 (3)−0.30228 (17)0.46809 (3)0.02702 (15)
F20.41420 (3)0.04201 (17)0.43779 (3)0.03119 (17)
F30.45421 (3)−0.34947 (19)0.47055 (4)0.03439 (19)
F40.33072 (3)1.47263 (18)0.83440 (3)0.02871 (16)
F50.38418 (2)1.47751 (19)0.82146 (3)0.03130 (18)
F60.34376 (3)1.85581 (16)0.80395 (4)0.03396 (19)
N10.40343 (3)0.5481 (2)0.59973 (4)0.01725 (16)
N20.33501 (3)0.8779 (2)0.64593 (4)0.01823 (16)
C10.51574 (3)0.1868 (2)0.66416 (5)0.01730 (17)
C20.53549 (4)−0.0190 (2)0.64928 (5)0.02017 (19)
H2A0.5667−0.07770.67910.024*
C30.50850 (4)−0.1361 (2)0.58984 (5)0.01883 (18)
H3A0.5214−0.27330.57930.023*
C40.46179 (3)−0.0459 (2)0.54599 (5)0.01615 (17)
C50.44222 (3)0.1577 (2)0.56131 (5)0.01572 (17)
H5A0.41090.21400.53150.019*
C60.46882 (3)0.2794 (2)0.62082 (5)0.01529 (16)
C70.44777 (3)0.5018 (2)0.63563 (5)0.01595 (17)
H7A0.46730.60980.67190.019*
C80.38645 (4)0.7774 (2)0.61797 (5)0.01833 (18)
H8A0.37570.93760.58940.022*
H8B0.41210.84360.65970.022*
C90.34569 (4)0.6674 (2)0.61674 (5)0.01850 (18)
H9A0.31790.63510.57390.022*
H9B0.35450.48690.63910.022*
C100.29330 (3)0.9775 (2)0.61435 (5)0.01680 (17)
H10A0.27050.91460.57360.020*
C110.28058 (3)1.1927 (2)0.64174 (5)0.01518 (16)
C120.23492 (3)1.3059 (2)0.60942 (5)0.01720 (17)
C130.22371 (4)1.5054 (2)0.63682 (5)0.02008 (19)
H13A0.19321.57940.61440.024*
C140.25840 (4)1.5922 (2)0.69772 (5)0.01877 (18)
H14A0.25121.72380.71660.023*
C150.30421 (3)1.4814 (2)0.73076 (5)0.01553 (16)
C160.31517 (3)1.2865 (2)0.70305 (5)0.01529 (16)
H16A0.34591.21660.72540.018*
C170.43124 (4)−0.1644 (2)0.48093 (5)0.01965 (19)
C180.34081 (4)1.5713 (2)0.79726 (5)0.01786 (18)
U11U22U33U12U13U23
Cl10.01659 (11)0.03460 (15)0.01714 (11)0.00362 (10)0.00552 (9)−0.00367 (10)
Cl20.01410 (11)0.03396 (15)0.01727 (11)0.00410 (9)0.00514 (9)−0.00528 (10)
F10.0227 (3)0.0324 (4)0.0215 (3)−0.0075 (3)0.0113 (3)−0.0041 (3)
F20.0443 (4)0.0263 (4)0.0198 (3)0.0003 (3)0.0181 (3)0.0034 (3)
F30.0314 (4)0.0401 (5)0.0311 (4)0.0075 (3)0.0189 (3)−0.0113 (3)
F40.0281 (4)0.0420 (4)0.0175 (3)−0.0100 (3)0.0147 (3)−0.0003 (3)
F50.0142 (3)0.0474 (5)0.0236 (3)−0.0012 (3)0.0072 (3)−0.0106 (3)
F60.0474 (5)0.0173 (3)0.0210 (3)−0.0056 (3)0.0127 (3)−0.0035 (3)
N10.0159 (4)0.0195 (4)0.0181 (4)0.0028 (3)0.0113 (3)0.0004 (3)
N20.0155 (4)0.0207 (4)0.0203 (4)0.0015 (3)0.0119 (3)−0.0020 (3)
C10.0134 (4)0.0203 (4)0.0162 (4)0.0010 (3)0.0081 (3)0.0004 (3)
C20.0133 (4)0.0225 (5)0.0226 (5)0.0040 (3)0.0099 (4)0.0018 (4)
C30.0173 (4)0.0184 (4)0.0241 (5)0.0029 (3)0.0144 (4)0.0005 (4)
C40.0154 (4)0.0172 (4)0.0178 (4)0.0009 (3)0.0111 (3)0.0005 (3)
C50.0141 (4)0.0172 (4)0.0169 (4)0.0020 (3)0.0101 (3)0.0014 (3)
C60.0128 (4)0.0171 (4)0.0167 (4)0.0017 (3)0.0094 (3)0.0012 (3)
C70.0158 (4)0.0166 (4)0.0172 (4)0.0011 (3)0.0110 (3)0.0003 (3)
C80.0186 (4)0.0171 (4)0.0233 (5)0.0024 (3)0.0149 (4)−0.0002 (3)
C90.0155 (4)0.0200 (4)0.0217 (4)0.0007 (3)0.0122 (4)−0.0031 (4)
C100.0145 (4)0.0192 (4)0.0167 (4)0.0002 (3)0.0096 (3)−0.0019 (3)
C110.0132 (4)0.0166 (4)0.0164 (4)0.0012 (3)0.0094 (3)0.0000 (3)
C120.0127 (4)0.0208 (4)0.0152 (4)0.0011 (3)0.0071 (3)−0.0012 (3)
C130.0147 (4)0.0240 (5)0.0197 (4)0.0040 (4)0.0096 (4)−0.0012 (4)
C140.0174 (4)0.0199 (4)0.0202 (4)0.0022 (4)0.0122 (4)−0.0013 (4)
C150.0152 (4)0.0158 (4)0.0158 (4)−0.0007 (3)0.0096 (3)−0.0002 (3)
C160.0131 (4)0.0168 (4)0.0163 (4)0.0005 (3)0.0091 (3)0.0002 (3)
C170.0212 (4)0.0203 (5)0.0195 (4)0.0018 (4)0.0135 (4)−0.0005 (4)
C180.0181 (4)0.0184 (4)0.0174 (4)−0.0021 (3)0.0110 (4)−0.0008 (3)
Cl1—C11.7362 (11)C5—H5A0.9300
Cl2—C121.7358 (10)C6—C71.4746 (14)
F1—C171.3433 (13)C7—H7A0.9300
F2—C171.3389 (13)C8—C91.5253 (15)
F3—C171.3348 (13)C8—H8A0.9700
F4—C181.3419 (12)C8—H8B0.9700
F5—C181.3325 (13)C9—H9A0.9700
F6—C181.3354 (13)C9—H9B0.9700
N1—C71.2693 (13)C10—C111.4771 (14)
N1—C81.4580 (13)C10—H10A0.9300
N2—C101.2663 (13)C11—C121.3977 (14)
N2—C91.4517 (13)C11—C161.4004 (14)
C1—C21.3901 (15)C12—C131.3944 (14)
C1—C61.4000 (14)C13—C141.3839 (15)
C2—C31.3853 (15)C13—H13A0.9300
C2—H2A0.9300C14—C151.3963 (14)
C3—C41.3933 (14)C14—H14A0.9300
C3—H3A0.9300C15—C161.3803 (14)
C4—C51.3858 (14)C15—C181.4979 (14)
C4—C171.4989 (15)C16—H16A0.9300
C5—C61.3955 (14)
Cl···Ni3.2714 (10)F···Fii2.9192 (11)
C7—N1—C8116.62 (9)H9A—C9—H9B108.3
C10—N2—C9118.26 (9)N2—C10—C11120.47 (9)
C2—C1—C6121.96 (9)N2—C10—H10A119.8
C2—C1—Cl1117.63 (8)C11—C10—H10A119.8
C6—C1—Cl1120.41 (8)C12—C11—C16117.82 (9)
C3—C2—C1119.69 (9)C12—C11—C10122.86 (9)
C3—C2—H2A120.2C16—C11—C10119.32 (9)
C1—C2—H2A120.2C13—C12—C11121.63 (9)
C2—C3—C4119.18 (9)C13—C12—Cl2117.78 (8)
C2—C3—H3A120.4C11—C12—Cl2120.58 (8)
C4—C3—H3A120.4C14—C13—C12119.43 (9)
C5—C4—C3120.80 (9)C14—C13—H13A120.3
C5—C4—C17117.96 (9)C12—C13—H13A120.3
C3—C4—C17121.24 (9)C13—C14—C15119.74 (9)
C4—C5—C6120.96 (9)C13—C14—H14A120.1
C4—C5—H5A119.5C15—C14—H14A120.1
C6—C5—H5A119.5C16—C15—C14120.47 (9)
C5—C6—C1117.39 (9)C16—C15—C18120.66 (9)
C5—C6—C7120.12 (9)C14—C15—C18118.84 (9)
C1—C6—C7122.47 (9)C15—C16—C11120.89 (9)
N1—C7—C6121.08 (9)C15—C16—H16A119.6
N1—C7—H7A119.5C11—C16—H16A119.6
C6—C7—H7A119.5F3—C17—F2106.87 (9)
N1—C8—C9109.64 (9)F3—C17—F1106.95 (9)
N1—C8—H8A109.7F2—C17—F1105.83 (9)
C9—C8—H8A109.7F3—C17—C4112.89 (9)
N1—C8—H8B109.7F2—C17—C4112.02 (9)
C9—C8—H8B109.7F1—C17—C4111.84 (8)
H8A—C8—H8B108.2F5—C18—F6106.77 (9)
N2—C9—C8109.09 (9)F5—C18—F4106.53 (9)
N2—C9—H9A109.9F6—C18—F4105.93 (9)
C8—C9—H9A109.9F5—C18—C15113.15 (9)
N2—C9—H9B109.9F6—C18—C15112.32 (9)
C8—C9—H9B109.9F4—C18—C15111.66 (9)
C6—C1—C2—C30.55 (17)C16—C11—C12—Cl2−179.14 (8)
Cl1—C1—C2—C3−179.64 (9)C10—C11—C12—Cl2−0.15 (15)
C1—C2—C3—C4−0.30 (16)C11—C12—C13—C14−0.63 (17)
C2—C3—C4—C5−0.22 (16)Cl2—C12—C13—C14178.44 (9)
C2—C3—C4—C17179.54 (10)C12—C13—C14—C150.58 (17)
C3—C4—C5—C60.51 (15)C13—C14—C15—C160.18 (16)
C17—C4—C5—C6−179.26 (9)C13—C14—C15—C18−178.10 (10)
C4—C5—C6—C1−0.27 (15)C14—C15—C16—C11−0.92 (15)
C4—C5—C6—C7178.24 (9)C18—C15—C16—C11177.33 (9)
C2—C1—C6—C5−0.26 (15)C12—C11—C16—C150.86 (15)
Cl1—C1—C6—C5179.93 (8)C10—C11—C16—C15−178.16 (9)
C2—C1—C6—C7−178.73 (10)C5—C4—C17—F3177.37 (9)
Cl1—C1—C6—C71.46 (14)C3—C4—C17—F3−2.39 (15)
C8—N1—C7—C6−178.56 (9)C5—C4—C17—F256.68 (13)
C5—C6—C7—N113.43 (15)C3—C4—C17—F2−123.09 (11)
C1—C6—C7—N1−168.13 (10)C5—C4—C17—F1−61.95 (13)
C7—N1—C8—C9−129.40 (10)C3—C4—C17—F1118.28 (11)
C10—N2—C9—C8122.57 (11)C16—C15—C18—F58.87 (14)
N1—C8—C9—N2169.41 (8)C14—C15—C18—F5−172.85 (10)
C9—N2—C10—C11−179.84 (9)C16—C15—C18—F6129.85 (11)
N2—C10—C11—C12−178.81 (10)C14—C15—C18—F6−51.87 (13)
N2—C10—C11—C160.17 (15)C16—C15—C18—F4−111.31 (11)
C16—C11—C12—C13−0.09 (16)C14—C15—C18—F466.97 (13)
C10—C11—C12—C13178.90 (10)
D—H···AD—HH···AD···AD—H···A
C3—H3A···F30.932.432.7415 (14)100
C7—H7A···Cl10.932.713.0811 (12)105
C10—H10A···Cl20.932.723.0925 (13)105
C16—H16A···F50.932.402.7325 (13)101
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3A⋯F30.932.432.7415 (14)100
C7—H7A⋯Cl10.932.713.0811 (12)105
C10—H10A⋯Cl20.932.723.0925 (13)105
C16—H16A⋯F50.932.402.7325 (13)101

Symmetry codes: .

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