Literature DB >> 21201204

(2R)-N-[5-(4-Chloro-phen-yl)-1,3,4-thia-diazol-2-yl]-2-(cinnamoylamino)propanamide.

Shao-Hua Li, Hui-Ming Huang, Bin-Hai Kuang, Guo-Gang Tu, Cheng-Mei Liu.   

Abstract

In the title compound, C(20)H(17)ClN(4)O(2)S, the dihedral angle between the two benzene rings is 65.9 (1)°; the corresponding angle between the 4-chloro-phenyl and thia-diazole rings is 3.4 (8)°. The conformations of the N-H and C=O bonds are anti with respect to each other. The enone groups show a trans configuration. The structure displays intermolecular N-H⋯O, C-H⋯N, C-H⋯S and C-H⋯O hydrogen bonding.

Entities:  

Year:  2008        PMID: 21201204      PMCID: PMC2959416          DOI: 10.1107/S1600536808030353

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For 1,3,4-thia­diazole scaffold compounds and their biological activity, see: Tu et al. (2008 ▶). For the synthesis, see: Foroumadi et al. (1999 ▶); Levy & Palmer (1942 ▶); Song et al. (1992 ▶). For related structures, see: Fun et al. (2008 ▶); Gowda et al. (2008 ▶) Thiruvalluvar et al. (2008 ▶).

Experimental

Crystal data

C20H17ClN4O2S M = 412.89 Orthorhombic, a = 6.6324 (15) Å b = 8.575 (2) Å c = 34.367 (8) Å V = 1954.6 (8) Å3 Z = 4 Mo Kα radiation μ = 0.33 mm−1 T = 296 (2) K 0.41 × 0.17 × 0.07 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: none 14721 measured reflections 4706 independent reflections 2807 reflections with I > 2σ(I) R int = 0.046

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.099 S = 1.02 4706 reflections 254 parameters H-atom parameters constrained Δρmax = 0.15 e Å−3 Δρmin = −0.20 e Å−3 Absolute structure: Flack (1983 ▶), 1876 Friedel pairs Flack parameter: −0.12 (7) Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: APEX2; software used to prepare material for publication: APEX2 and publCIF (Westrip, 2008 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808030353/gw2052sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808030353/gw2052Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H17ClN4O2SDx = 1.403 Mg m3
Mr = 412.89Melting point: 480 K
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 3308 reflections
a = 6.6324 (15) Åθ = 2.4–21.0°
b = 8.575 (2) ŵ = 0.33 mm1
c = 34.367 (8) ÅT = 296 K
V = 1954.6 (8) Å3Bolck, colourless
Z = 40.41 × 0.18 × 0.07 mm
F(000) = 856
Bruker SMART CCD area-detector diffractometer2807 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.046
graphiteθmax = 28.4°, θmin = 2.4°
φ and ω scansh = −8→8
14721 measured reflectionsk = −11→11
4706 independent reflectionsl = −45→44
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.043H-atom parameters constrained
wR(F2) = 0.099w = 1/[σ2(Fo2) + (0.0226P)2 + 0.0747P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max < 0.001
4706 reflectionsΔρmax = 0.15 e Å3
254 parametersΔρmin = −0.20 e Å3
0 restraintsAbsolute structure: Flack (1983), 1876 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.12 (7)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.6789 (5)0.2710 (4)0.19355 (8)0.0782 (9)
H1B0.60670.20300.17770.094*
C20.6159 (6)0.2979 (4)0.23129 (10)0.0996 (13)
H2B0.50240.24680.24080.120*
C30.7184 (6)0.3981 (5)0.25465 (9)0.0977 (12)
H3B0.67450.41580.28000.117*
C40.8862 (6)0.4732 (4)0.24098 (8)0.0937 (12)
H4B0.95510.54340.25680.112*
C50.9526 (5)0.4443 (4)0.20360 (8)0.0756 (9)
H5A1.06920.49270.19470.091*
C60.8481 (5)0.3443 (3)0.17924 (7)0.0613 (8)
C70.9087 (5)0.3172 (3)0.13882 (7)0.0612 (8)
H7A0.82460.25330.12420.073*
C81.0669 (4)0.3722 (3)0.12100 (7)0.0584 (7)
H8A1.15790.43140.13530.070*
C91.1094 (4)0.3464 (3)0.07984 (7)0.0523 (7)
C101.3357 (4)0.4044 (3)0.02573 (6)0.0483 (6)
H10A1.34210.29340.01900.058*
C111.5445 (4)0.4755 (3)0.02035 (8)0.0626 (8)
H11A1.63840.42450.03740.094*
H11B1.53970.58470.02640.094*
H11C1.58700.4619−0.00610.094*
C121.1836 (4)0.4831 (3)−0.00072 (7)0.0494 (6)
C131.0385 (4)0.4721 (3)−0.06496 (7)0.0471 (6)
C140.7573 (4)0.5583 (3)−0.10172 (6)0.0494 (6)
C150.5693 (4)0.6256 (3)−0.11652 (7)0.0490 (6)
C160.4931 (5)0.5842 (3)−0.15249 (7)0.0639 (7)
H16A0.56250.5115−0.16750.077*
C170.3163 (5)0.6479 (3)−0.16687 (8)0.0669 (8)
H17A0.26790.6198−0.19130.080*
C180.2142 (4)0.7538 (3)−0.14421 (8)0.0589 (7)
C190.2848 (5)0.7959 (3)−0.10843 (8)0.0637 (8)
H19A0.21370.8676−0.09350.076*
C200.4600 (4)0.7328 (3)−0.09455 (8)0.0591 (7)
H20A0.50680.7619−0.07010.071*
Cl1−0.00738 (13)0.83679 (9)−0.16181 (2)0.0835 (3)
N11.2732 (3)0.4188 (2)0.06588 (5)0.0537 (5)
H1A1.34360.47580.08130.064*
N21.1824 (3)0.4305 (2)−0.03825 (5)0.0525 (5)
H2A1.27680.3681−0.04550.063*
N31.0265 (4)0.4021 (3)−0.09856 (6)0.0590 (6)
N40.8619 (4)0.4535 (2)−0.12001 (6)0.0585 (6)
O11.0027 (3)0.2679 (2)0.05768 (5)0.0672 (5)
O21.0712 (3)0.5869 (2)0.00979 (5)0.0638 (5)
S10.85258 (10)0.60793 (7)−0.056449 (17)0.05201 (18)
U11U22U33U12U13U23
C10.081 (3)0.090 (2)0.0635 (18)−0.017 (2)0.0140 (18)−0.0047 (16)
C20.112 (4)0.116 (3)0.070 (2)−0.030 (3)0.029 (2)−0.004 (2)
C30.110 (3)0.124 (3)0.0594 (19)−0.021 (3)0.021 (2)−0.006 (2)
C40.113 (3)0.114 (3)0.0541 (18)−0.028 (3)0.0073 (19)−0.0090 (18)
C50.080 (2)0.093 (2)0.0539 (17)−0.0173 (19)0.0071 (16)−0.0014 (15)
C60.068 (2)0.0673 (18)0.0484 (14)−0.0030 (16)0.0023 (14)0.0034 (12)
C70.075 (2)0.0623 (16)0.0465 (15)−0.0090 (16)−0.0007 (15)0.0002 (13)
C80.0591 (19)0.0670 (17)0.0490 (15)−0.0077 (15)0.0026 (13)−0.0025 (13)
C90.0530 (19)0.0535 (15)0.0503 (14)−0.0074 (13)−0.0006 (13)0.0012 (12)
C100.0448 (15)0.0539 (14)0.0464 (13)−0.0036 (14)0.0008 (12)−0.0019 (11)
C110.0491 (19)0.0728 (18)0.0658 (17)−0.0078 (15)0.0092 (14)−0.0079 (14)
C120.0496 (18)0.0524 (15)0.0460 (14)−0.0044 (13)0.0050 (12)−0.0053 (11)
C130.0461 (16)0.0516 (13)0.0437 (13)0.0004 (12)0.0065 (12)−0.0024 (11)
C140.0524 (18)0.0529 (15)0.0428 (13)−0.0032 (13)0.0074 (12)−0.0003 (11)
C150.0502 (17)0.0516 (14)0.0453 (14)−0.0025 (13)0.0051 (12)0.0000 (12)
C160.067 (2)0.0747 (18)0.0499 (15)0.0125 (17)0.0012 (15)−0.0069 (13)
C170.065 (2)0.081 (2)0.0540 (15)0.0083 (17)−0.0075 (15)−0.0055 (14)
C180.0460 (18)0.0622 (17)0.0686 (18)0.0037 (14)−0.0010 (14)0.0109 (14)
C190.055 (2)0.0669 (18)0.0695 (18)0.0050 (15)0.0080 (15)−0.0077 (14)
C200.056 (2)0.0666 (17)0.0545 (16)0.0020 (16)0.0009 (14)−0.0103 (13)
Cl10.0582 (5)0.0923 (6)0.1001 (6)0.0079 (4)−0.0089 (5)0.0129 (4)
N10.0521 (14)0.0672 (13)0.0417 (11)−0.0115 (12)−0.0006 (10)−0.0046 (10)
N20.0508 (14)0.0629 (13)0.0439 (11)0.0086 (11)0.0030 (10)−0.0048 (9)
N30.0611 (16)0.0685 (13)0.0472 (12)0.0108 (13)0.0006 (11)−0.0074 (11)
N40.0591 (16)0.0676 (13)0.0488 (11)0.0069 (13)0.0014 (12)−0.0090 (10)
O10.0605 (13)0.0815 (12)0.0595 (11)−0.0230 (11)0.0052 (11)−0.0127 (10)
O20.0666 (13)0.0715 (12)0.0534 (10)0.0174 (11)−0.0024 (9)−0.0166 (9)
S10.0507 (4)0.0584 (4)0.0469 (3)0.0047 (3)0.0040 (3)−0.0059 (3)
C1—C61.377 (4)C11—H11C0.9600
C1—C21.382 (4)C12—O21.216 (3)
C1—H1B0.9300C12—N21.367 (3)
C2—C31.359 (5)C13—N31.304 (3)
C2—H2B0.9300C13—N21.372 (3)
C3—C41.369 (5)C13—S11.721 (3)
C3—H3B0.9300C14—N41.298 (3)
C4—C51.380 (4)C14—C151.465 (3)
C4—H4B0.9300C14—S11.732 (2)
C5—C61.384 (4)C15—C161.382 (3)
C5—H5A0.9300C15—C201.393 (3)
C6—C71.465 (4)C16—C171.385 (4)
C7—C81.303 (4)C16—H16A0.9300
C7—H7A0.9300C17—C181.375 (4)
C8—C91.459 (3)C17—H17A0.9300
C8—H8A0.9300C18—C191.364 (4)
C9—O11.239 (3)C18—Cl11.741 (3)
C9—N11.340 (3)C19—C201.368 (4)
C10—N11.446 (3)C19—H19A0.9300
C10—C121.517 (3)C20—H20A0.9300
C10—C111.524 (3)N1—H1A0.8600
C10—H10A0.9800N2—H2A0.8600
C11—H11A0.9600N3—N41.389 (3)
C11—H11B0.9600
C6—C1—C2120.4 (3)H11B—C11—H11C109.5
C6—C1—H1B119.8O2—C12—N2121.2 (2)
C2—C1—H1B119.8O2—C12—C10123.8 (2)
C3—C2—C1120.6 (4)N2—C12—C10115.0 (2)
C3—C2—H2B119.7N3—C13—N2121.0 (2)
C1—C2—H2B119.7N3—C13—S1114.7 (2)
C2—C3—C4120.1 (3)N2—C13—S1124.11 (17)
C2—C3—H3B120.0N4—C14—C15124.0 (2)
C4—C3—H3B120.0N4—C14—S1114.2 (2)
C3—C4—C5119.6 (3)C15—C14—S1121.72 (18)
C3—C4—H4B120.2C16—C15—C20117.6 (2)
C5—C4—H4B120.2C16—C15—C14121.4 (2)
C4—C5—C6121.0 (3)C20—C15—C14121.0 (2)
C4—C5—H5A119.5C15—C16—C17121.8 (3)
C6—C5—H5A119.5C15—C16—H16A119.1
C1—C6—C5118.3 (3)C17—C16—H16A119.1
C1—C6—C7119.3 (3)C18—C17—C16118.4 (3)
C5—C6—C7122.3 (3)C18—C17—H17A120.8
C8—C7—C6127.5 (3)C16—C17—H17A120.8
C8—C7—H7A116.2C19—C18—C17121.1 (3)
C6—C7—H7A116.2C19—C18—Cl1119.6 (2)
C7—C8—C9123.8 (3)C17—C18—Cl1119.3 (2)
C7—C8—H8A118.1C18—C19—C20120.1 (3)
C9—C8—H8A118.1C18—C19—H19A120.0
O1—C9—N1119.7 (2)C20—C19—H19A120.0
O1—C9—C8124.6 (3)C19—C20—C15121.0 (3)
N1—C9—C8115.7 (2)C19—C20—H20A119.5
N1—C10—C12110.1 (2)C15—C20—H20A119.5
N1—C10—C11110.0 (2)C9—N1—C10122.3 (2)
C12—C10—C11110.7 (2)C9—N1—H1A118.8
N1—C10—H10A108.7C10—N1—H1A118.8
C12—C10—H10A108.7C12—N2—C13123.3 (2)
C11—C10—H10A108.7C12—N2—H2A118.3
C10—C11—H11A109.5C13—N2—H2A118.3
C10—C11—H11B109.5C13—N3—N4111.8 (2)
H11A—C11—H11B109.5C14—N4—N3112.5 (2)
C10—C11—H11C109.5C13—S1—C1486.70 (12)
H11A—C11—H11C109.5
C6—C1—C2—C30.7 (6)C16—C17—C18—C190.2 (4)
C1—C2—C3—C4−0.3 (6)C16—C17—C18—Cl1179.5 (2)
C2—C3—C4—C5−1.2 (6)C17—C18—C19—C200.1 (4)
C3—C4—C5—C62.2 (5)Cl1—C18—C19—C20−179.2 (2)
C2—C1—C6—C50.2 (5)C18—C19—C20—C150.2 (4)
C2—C1—C6—C7−178.4 (3)C16—C15—C20—C19−0.8 (4)
C4—C5—C6—C1−1.7 (5)C14—C15—C20—C19179.8 (2)
C4—C5—C6—C7176.8 (3)O1—C9—N1—C10−2.3 (4)
C1—C6—C7—C8−177.5 (3)C8—C9—N1—C10179.8 (2)
C5—C6—C7—C84.0 (5)C12—C10—N1—C967.6 (3)
C6—C7—C8—C9−176.3 (2)C11—C10—N1—C9−170.1 (2)
C7—C8—C9—O1−1.3 (4)O2—C12—N2—C13−9.9 (4)
C7—C8—C9—N1176.5 (3)C10—C12—N2—C13171.0 (2)
N1—C10—C12—O224.2 (3)N3—C13—N2—C12−170.0 (2)
C11—C10—C12—O2−97.7 (3)S1—C13—N2—C125.7 (3)
N1—C10—C12—N2−156.8 (2)N2—C13—N3—N4175.5 (2)
C11—C10—C12—N281.4 (3)S1—C13—N3—N4−0.5 (3)
N4—C14—C15—C16−2.3 (4)C15—C14—N4—N3−176.1 (2)
S1—C14—C15—C16−179.3 (2)S1—C14—N4—N31.1 (3)
N4—C14—C15—C20177.1 (2)C13—N3—N4—C14−0.4 (3)
S1—C14—C15—C200.1 (3)N3—C13—S1—C140.9 (2)
C20—C15—C16—C171.1 (4)N2—C13—S1—C14−175.0 (2)
C14—C15—C16—C17−179.5 (2)N4—C14—S1—C13−1.2 (2)
C15—C16—C17—C18−0.8 (4)C15—C14—S1—C13176.1 (2)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O1i0.861.942.802 (3)175.
C7—H7A···O10.932.582.888 (3)100.
C7—H7A···N3ii0.932.543.446 (3)164.
C11—H11C···S1iii0.962.773.526 (3)136.
C20—H20A···S10.932.693.105 (3)108.
C20—H20A···O2iv0.932.483.380 (3)162.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O1i0.861.942.802 (3)175
C7—H7A⋯N3ii0.932.543.446 (3)164
C11—H11C⋯S1iii0.962.773.526 (3)136
C20—H20A⋯O2iv0.932.483.380 (3)162

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  6 in total

1.  Synthesis and in vitro antifungal activity of 2-aryl-5-phenylsulfonyl-1,3,4-thiadiazole derivatives.

Authors:  A Foroumadi; M Daneshtalab; A Shafiee
Journal:  Arzneimittelforschung       Date:  1999-12

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  N-(2,4-Dichloro-phen-yl)benzamide.

Authors:  B Thimme Gowda; Miroslav Tokarčík; Jozef Kožíšek; B P Sowmya; Hartmut Fuess
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-03

4.  Novel aminopeptidase N inhibitors derived from 1,3,4-thiadiazole scaffold.

Authors:  GuoGang Tu; ShaoHua Li; HuiMing Huang; Gang Li; Fang Xiong; Xi Mai; HuaWei Zhu; BinHai Kuang; Wen Fang Xu
Journal:  Bioorg Med Chem       Date:  2008-06-05       Impact factor: 3.641

5.  (E)-3-(4-Chloro-phen-yl)-1-(2,4-dichloro-5-fluoro-phen-yl)prop-2-en-1-one.

Authors:  Hoong-Kun Fun; Suchada Chantrapromma; P S Patil; M S Karthikeyan; S M Dharmaprakash
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-03

6.  (E)-1-[4-(Methyl-sulfan-yl)phen-yl]-3-phenyl-prop-2-en-1-one.

Authors:  A Thiruvalluvar; M Subramanyam; R J Butcher; T Karabasanagouda; A V Adhikari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-06-13
  6 in total
  2 in total

1.  (2R,3R)-N-(4-Chloro-phen-yl)-2,3-dihydr-oxy-N'-(5-phenyl-1,3,4-thia-diazol-2-yl)succinamide.

Authors:  Hui-Ming Huang; Gen-Lin Chen; Min Li; Guo-Gang Tu; Cheng-Mei Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-06

2.  2-Benzoyl-amino-N-[5-(4-bromo-phen-yl)-1,3,4-thia-diazol-2-yl]ethanamide.

Authors:  Hui-Ming Huang; Shi-Yuan Luo; Shao-Hua Li; Cheng-Mei Liu; Guo-Gang Tu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-17
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.