Literature DB >> 21580609

(2R,3R)-N-(4-Chloro-phen-yl)-2,3-dihydr-oxy-N'-(5-phenyl-1,3,4-thia-diazol-2-yl)succinamide.

Hui-Ming Huang, Gen-Lin Chen, Min Li, Guo-Gang Tu, Cheng-Mei Liu.   

Abstract

In the structure of the title compound, C(18)H(15)ClN(4)O(4)S, the dihedral angle between the two benzene rings is 1.4 (3)°. The angle between the phenyl ring and thia-diazole ring is 5.8 (4)°. The conformations of the N-H and C=O bonds are anti with respect to each other. In the crystal structure, mol-ecules are linked by inter-molecular O-H⋯N, N-H⋯O and O-H⋯O hydrogen bonds, forming a three-dimensional network.

Entities:  

Year:  2010        PMID: 21580609      PMCID: PMC2983857          DOI: 10.1107/S1600536810007919

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, see: Marson & Melling (2005 ▶); Tu et al. (2008 ▶); Shriner & Furrow (1955 ▶). For related structures, see: Watadani et al. (2005 ▶); Li et al. (2008 ▶).

Experimental

Crystal data

C18H15ClN4O4S M = 418.85 Monoclinic, a = 41.381 (3) Å b = 5.1744 (5) Å c = 8.7442 (9) Å β = 98.315 (1)° V = 1852.6 (3) Å3 Z = 4 Mo Kα radiation μ = 0.35 mm−1 T = 298 K 0.46 × 0.40 × 0.11 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.855, T max = 0.962 4632 measured reflections 2697 independent reflections 2319 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.091 S = 1.04 2697 reflections 253 parameters 1 restraint H-atom parameters constrained Δρmax = 0.19 e Å−3 Δρmin = −0.15 e Å−3 Absolute structure: Flack (1983 ▶), 863 Friedel pairs Flack parameter: 0.03 (8) Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810007919/im2182sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810007919/im2182Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H15ClN4O4SF(000) = 864
Mr = 418.85Dx = 1.502 Mg m3
Monoclinic, C2Mo Kα radiation, λ = 0.71073 Å
Hall symbol: C 2yCell parameters from 2277 reflections
a = 41.381 (3) Åθ = 2.4–27.9°
b = 5.1744 (5) ŵ = 0.35 mm1
c = 8.7442 (9) ÅT = 298 K
β = 98.315 (1)°Block, colourless
V = 1852.6 (3) Å30.46 × 0.40 × 0.11 mm
Z = 4
Bruker SMART CCD area-detector diffractometer2697 independent reflections
Radiation source: fine-focus sealed tube2319 reflections with I > 2σ(I)
graphiteRint = 0.022
phi and ω scansθmax = 25.0°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −44→48
Tmin = 0.855, Tmax = 0.962k = −6→4
4632 measured reflectionsl = −10→10
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.036H-atom parameters constrained
wR(F2) = 0.091w = 1/[σ2(Fo2) + (0.0471P)2 + 0.5765P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.001
2697 reflectionsΔρmax = 0.19 e Å3
253 parametersΔρmin = −0.15 e Å3
1 restraintAbsolute structure: Flack (1983), 863 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.03 (8)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.51651 (2)0.5674 (3)0.31490 (11)0.0776 (4)
N10.82422 (6)0.6761 (7)0.6878 (3)0.0533 (8)
N20.85606 (6)0.7102 (6)0.7553 (3)0.0510 (8)
N30.77780 (5)0.4311 (5)0.7013 (3)0.0438 (7)
H3B0.76860.51120.62030.053*
N40.64966 (5)0.5279 (6)0.6689 (3)0.0412 (6)
H4A0.65890.67490.69060.049*
O10.76958 (5)0.1304 (5)0.8778 (3)0.0567 (7)
O20.65669 (5)0.0938 (5)0.7001 (3)0.0587 (6)
O30.72236 (4)0.3604 (6)0.5396 (2)0.0508 (6)
H30.70520.32060.48600.076*
O40.70977 (5)0.6252 (4)0.8040 (2)0.0485 (6)
H40.71200.66450.89580.073*
S10.833503 (16)0.34609 (19)0.90607 (8)0.0471 (2)
C10.75941 (7)0.2576 (6)0.7638 (3)0.0394 (8)
C20.72451 (6)0.2352 (7)0.6839 (3)0.0404 (8)
H20.71870.05240.66810.048*
C30.70219 (6)0.3600 (7)0.7875 (3)0.0378 (6)
H3A0.70590.27760.88940.045*
C40.66679 (6)0.3166 (7)0.7157 (3)0.0386 (7)
C50.80992 (7)0.4943 (7)0.7539 (3)0.0412 (8)
C60.86447 (6)0.5530 (7)0.8697 (3)0.0374 (7)
C70.89748 (6)0.5497 (7)0.9587 (3)0.0363 (7)
C80.92006 (7)0.7319 (7)0.9290 (4)0.0510 (9)
H80.91420.85950.85530.061*
C90.95150 (8)0.7257 (8)1.0084 (4)0.0590 (10)
H90.96670.84780.98690.071*
C100.96029 (7)0.5415 (8)1.1180 (4)0.0557 (9)
H100.98140.53911.17160.067*
C110.93800 (7)0.3592 (9)1.1492 (4)0.0558 (9)
H110.94410.23351.22380.067*
C120.90653 (7)0.3624 (8)1.0698 (3)0.0469 (8)
H120.89150.23891.09110.056*
C130.61733 (6)0.5301 (7)0.5857 (3)0.0373 (7)
C140.60929 (7)0.7228 (7)0.4779 (3)0.0464 (8)
H140.62500.84370.46020.056*
C150.57817 (8)0.7379 (7)0.3959 (4)0.0505 (9)
H150.57270.87040.32510.061*
C160.55547 (7)0.5544 (7)0.4205 (3)0.0465 (8)
C170.56310 (6)0.3612 (8)0.5266 (4)0.0505 (8)
H170.54750.23880.54280.061*
C180.59436 (6)0.3490 (8)0.6101 (3)0.0455 (7)
H180.59970.21830.68240.055*
U11U22U33U12U13U23
Cl10.0454 (5)0.1052 (10)0.0745 (6)0.0098 (6)−0.0174 (4)−0.0027 (6)
N10.0330 (13)0.072 (2)0.0507 (15)−0.0065 (14)−0.0070 (11)0.0187 (15)
N20.0342 (13)0.067 (2)0.0487 (15)−0.0096 (14)−0.0045 (11)0.0138 (15)
N30.0319 (12)0.057 (2)0.0389 (13)−0.0026 (12)−0.0077 (10)0.0075 (12)
N40.0353 (12)0.0280 (14)0.0570 (14)−0.0032 (12)−0.0039 (10)−0.0028 (13)
O10.0445 (11)0.0624 (18)0.0572 (13)−0.0051 (12)−0.0125 (10)0.0186 (13)
O20.0386 (11)0.0314 (14)0.1006 (18)−0.0036 (11)−0.0086 (11)0.0009 (13)
O30.0376 (10)0.0773 (17)0.0334 (10)−0.0068 (13)−0.0091 (8)−0.0006 (12)
O40.0474 (12)0.0397 (14)0.0545 (12)−0.0058 (11)−0.0056 (9)−0.0140 (10)
S10.0327 (3)0.0557 (6)0.0486 (4)−0.0064 (4)−0.0085 (3)0.0129 (4)
C10.0365 (15)0.043 (2)0.0369 (15)0.0019 (14)−0.0022 (13)−0.0028 (14)
C20.0332 (15)0.042 (2)0.0422 (16)−0.0023 (14)−0.0063 (12)−0.0065 (15)
C30.0371 (14)0.0351 (17)0.0385 (14)−0.0033 (16)−0.0036 (11)0.0013 (16)
C40.0350 (14)0.0327 (19)0.0469 (15)−0.0010 (15)0.0023 (12)−0.0036 (15)
C50.0333 (14)0.053 (2)0.0356 (14)0.0019 (15)−0.0020 (12)0.0008 (15)
C60.0333 (14)0.043 (2)0.0347 (14)0.0013 (15)0.0020 (11)−0.0008 (15)
C70.0284 (13)0.042 (2)0.0374 (14)−0.0007 (14)0.0016 (11)−0.0050 (15)
C80.0420 (17)0.055 (2)0.0530 (19)−0.0029 (17)−0.0049 (14)0.0103 (17)
C90.0375 (17)0.066 (3)0.071 (2)−0.0122 (17)−0.0017 (16)0.007 (2)
C100.0316 (15)0.062 (3)0.068 (2)0.0018 (18)−0.0092 (14)0.000 (2)
C110.0433 (16)0.061 (2)0.0585 (19)0.007 (2)−0.0093 (14)0.012 (2)
C120.0386 (14)0.048 (2)0.0519 (17)−0.0052 (18)−0.0012 (13)0.0067 (19)
C130.0312 (13)0.0354 (18)0.0439 (15)0.0022 (14)0.0011 (11)−0.0047 (15)
C140.0459 (17)0.040 (2)0.0516 (18)−0.0033 (15)0.0001 (14)0.0037 (16)
C150.0555 (19)0.046 (2)0.0463 (17)0.0077 (17)−0.0040 (15)0.0056 (16)
C160.0377 (15)0.053 (2)0.0461 (16)0.0080 (18)−0.0027 (13)−0.0106 (17)
C170.0324 (14)0.047 (2)0.071 (2)−0.0044 (18)0.0031 (14)−0.001 (2)
C180.0354 (14)0.0396 (19)0.0599 (18)0.0019 (17)0.0014 (13)0.0069 (19)
Cl1—C161.739 (3)C6—C71.471 (3)
N1—C51.292 (4)C7—C81.379 (4)
N1—N21.375 (3)C7—C121.385 (5)
N2—C61.297 (4)C8—C91.384 (4)
N3—C11.343 (4)C8—H80.9300
N3—C51.381 (3)C9—C101.363 (5)
N3—H3B0.8600C9—H90.9300
N4—C41.335 (4)C10—C111.374 (5)
N4—C131.427 (3)C10—H100.9300
N4—H4A0.8600C11—C121.384 (4)
O1—C11.218 (3)C11—H110.9300
O2—C41.227 (4)C12—H120.9300
O3—C21.410 (4)C13—C181.373 (4)
O3—H30.8200C13—C141.380 (5)
O4—C31.411 (4)C14—C151.383 (4)
O4—H40.8200C14—H140.9300
S1—C51.713 (3)C15—C161.374 (5)
S1—C61.734 (3)C15—H150.9300
C1—C21.515 (4)C16—C171.369 (5)
C2—C31.528 (4)C17—C181.392 (4)
C2—H20.9800C17—H170.9300
C3—C41.525 (3)C18—H180.9300
C3—H3A0.9800
C5—N1—N2112.0 (2)C8—C7—C6119.7 (3)
C6—N2—N1112.6 (3)C12—C7—C6121.0 (3)
C1—N3—C5126.7 (2)C7—C8—C9120.2 (3)
C1—N3—H3B116.7C7—C8—H8119.9
C5—N3—H3B116.7C9—C8—H8119.9
C4—N4—C13125.5 (3)C10—C9—C8120.3 (3)
C4—N4—H4A117.3C10—C9—H9119.8
C13—N4—H4A117.3C8—C9—H9119.8
C2—O3—H3109.5C9—C10—C11120.1 (3)
C3—O4—H4109.5C9—C10—H10120.0
C5—S1—C686.24 (14)C11—C10—H10120.0
O1—C1—N3123.0 (3)C10—C11—C12120.1 (3)
O1—C1—C2122.0 (3)C10—C11—H11119.9
N3—C1—C2115.0 (2)C12—C11—H11119.9
O3—C2—C1108.1 (2)C11—C12—C7120.0 (3)
O3—C2—C3111.8 (3)C11—C12—H12120.0
C1—C2—C3108.2 (2)C7—C12—H12120.0
O3—C2—H2109.6C18—C13—C14119.7 (3)
C1—C2—H2109.6C18—C13—N4122.3 (3)
C3—C2—H2109.6C14—C13—N4118.0 (3)
O4—C3—C4111.8 (3)C13—C14—C15120.6 (3)
O4—C3—C2109.1 (2)C13—C14—H14119.7
C4—C3—C2108.7 (2)C15—C14—H14119.7
O4—C3—H3A109.0C16—C15—C14119.1 (3)
C4—C3—H3A109.0C16—C15—H15120.4
C2—C3—H3A109.0C14—C15—H15120.4
O2—C4—N4125.3 (3)C17—C16—C15121.0 (3)
O2—C4—C3118.4 (3)C17—C16—Cl1119.6 (3)
N4—C4—C3116.2 (3)C15—C16—Cl1119.5 (3)
N1—C5—N3120.3 (3)C16—C17—C18119.6 (3)
N1—C5—S1115.3 (2)C16—C17—H17120.2
N3—C5—S1124.4 (3)C18—C17—H17120.2
N2—C6—C7122.7 (3)C13—C18—C17120.0 (3)
N2—C6—S1113.92 (19)C13—C18—H18120.0
C7—C6—S1123.4 (2)C17—C18—H18120.0
C8—C7—C12119.3 (2)
C5—N1—N2—C6−0.1 (4)C5—S1—C6—C7−179.0 (3)
C5—N3—C1—O1−0.5 (5)N2—C6—C7—C85.0 (5)
C5—N3—C1—C2178.1 (3)S1—C6—C7—C8−175.8 (2)
O1—C1—C2—O3−167.3 (3)N2—C6—C7—C12−173.5 (3)
N3—C1—C2—O314.1 (4)S1—C6—C7—C125.8 (4)
O1—C1—C2—C371.5 (4)C12—C7—C8—C90.6 (5)
N3—C1—C2—C3−107.1 (3)C6—C7—C8—C9−177.9 (3)
O3—C2—C3—O4−55.8 (3)C7—C8—C9—C10−0.8 (6)
C1—C2—C3—O463.0 (3)C8—C9—C10—C110.6 (6)
O3—C2—C3—C466.4 (3)C9—C10—C11—C12−0.2 (6)
C1—C2—C3—C4−174.8 (3)C10—C11—C12—C70.0 (6)
C13—N4—C4—O2−3.5 (5)C8—C7—C12—C11−0.2 (5)
C13—N4—C4—C3173.6 (2)C6—C7—C12—C11178.3 (3)
O4—C3—C4—O2−177.4 (3)C4—N4—C13—C1834.5 (4)
C2—C3—C4—O262.1 (4)C4—N4—C13—C14−145.7 (3)
O4—C3—C4—N45.3 (3)C18—C13—C14—C151.1 (5)
C2—C3—C4—N4−115.3 (3)N4—C13—C14—C15−178.7 (3)
N2—N1—C5—N3−179.7 (3)C13—C14—C15—C16−1.5 (5)
N2—N1—C5—S10.4 (4)C14—C15—C16—C171.2 (5)
C1—N3—C5—N1−176.0 (3)C14—C15—C16—Cl1−178.6 (2)
C1—N3—C5—S13.9 (5)C15—C16—C17—C18−0.5 (5)
C6—S1—C5—N1−0.4 (3)Cl1—C16—C17—C18179.4 (3)
C6—S1—C5—N3179.6 (3)C14—C13—C18—C17−0.2 (5)
N1—N2—C6—C7179.1 (3)N4—C13—C18—C17179.5 (3)
N1—N2—C6—S1−0.2 (4)C16—C17—C18—C13−0.1 (5)
C5—S1—C6—N20.4 (3)
D—H···AD—HH···AD···AD—H···A
O3—H3···N1i0.821.952.733 (3)159
N3—H3B···O3ii0.862.353.061 (4)140
O4—H4···O1iii0.822.022.790 (3)155
N4—H4A···O2iv0.862.172.951 (4)151
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯N1i0.821.952.733 (3)159
N3—H3B⋯O3ii0.862.353.061 (4)140
O4—H4⋯O1iii0.822.022.790 (3)155
N4—H4A⋯O2iv0.862.172.951 (4)151

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Enantioselective syntheses of trans-3,4-difluoropyrrolidines and investigation of their applications in catalytic asymmetric synthesis.

Authors:  Charles M Marson; Robert C Melling
Journal:  J Org Chem       Date:  2005-11-25       Impact factor: 4.354

3.  (2R)-N-[5-(4-Chloro-phen-yl)-1,3,4-thia-diazol-2-yl]-2-(cinnamoylamino)propanamide.

Authors:  Shao-Hua Li; Hui-Ming Huang; Bin-Hai Kuang; Guo-Gang Tu; Cheng-Mei Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-09-24

4.  Novel aminopeptidase N inhibitors derived from 1,3,4-thiadiazole scaffold.

Authors:  GuoGang Tu; ShaoHua Li; HuiMing Huang; Gang Li; Fang Xiong; Xi Mai; HuaWei Zhu; BinHai Kuang; Wen Fang Xu
Journal:  Bioorg Med Chem       Date:  2008-06-05       Impact factor: 3.641

  4 in total

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