Literature DB >> 21201194

N'-(5-Bromo-2-hydr-oxy-3-methoxy-benzyl-idene)isonicotinohydrazide.

San-Jun Peng, Hai-Yun Hou.   

Abstract

The title compound, C(14)H(12)BrN(3)O(3), was prepared by reaction of 5-bromo-3-methoxy-salicylaldehyde and isonicotinohydrazide in methanol. The mol-ecule is not planar and adopts a trans configuration with respect to the C=N bond. There is an intra-molecular O-H⋯N hydrogen bond in the mol-ecule. The dihedral angle between the benzene and pyridine rings is 12.2 (2)°. In the crystal structure, mol-ecules are linked through inter-molecular N-H⋯N hydrogen bonds, forming chains running along the c-axis direction.

Entities:  

Year:  2008        PMID: 21201194      PMCID: PMC2959402          DOI: 10.1107/S1600536808029607

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bond-length data, see: Allen et al. (1987 ▶). For background on the biological properties of hydrazones, see: El-Tabl et al. (2008 ▶), Chen et al. (2008 ▶); Alvarez et al. (2008 ▶); Ventura & Martins (2008 ▶); Kalinowski et al. (2008 ▶). For related structures, see: Peng & Hou (2008 ▶); Shan et al. (2008 ▶); Fun et al. (2008 ▶); Yehye et al. (2008 ▶); Ejsmont et al. (2008 ▶); Han et al. (2006 ▶); Lu et al. (2008 ▶).

Experimental

Crystal data

C14H12BrN3O3 M = 350.18 Monoclinic, a = 7.4937 (9) Å b = 15.8843 (19) Å c = 11.7994 (14) Å β = 99.776 (2)° V = 1384.1 (3) Å3 Z = 4 Mo Kα radiation μ = 2.98 mm−1 T = 298 (2) K 0.20 × 0.18 × 0.18 mm

Data collection

Bruker SMART 1000 CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.587, T max = 0.616 (expected range = 0.557–0.584) 8003 measured reflections 3013 independent reflections 2299 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.076 S = 1.03 3013 reflections 195 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.39 e Å−3 Δρmin = −0.41 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808029607/sj2539sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808029607/sj2539Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H12BrN3O3F(000) = 704
Mr = 350.18Dx = 1.680 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3223 reflections
a = 7.4937 (9) Åθ = 2.5–29.2°
b = 15.8843 (19) ŵ = 2.98 mm1
c = 11.7994 (14) ÅT = 298 K
β = 99.776 (2)°Block, colorless
V = 1384.1 (3) Å30.20 × 0.18 × 0.18 mm
Z = 4
Bruker SMART 1000 CCD area-detector diffractometer3013 independent reflections
Radiation source: fine-focus sealed tube2299 reflections with I > 2σ(I)
graphiteRint = 0.023
ω scansθmax = 27.0°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −9→9
Tmin = 0.587, Tmax = 0.616k = −17→20
8003 measured reflectionsl = −15→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.030Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.076H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0328P)2 + 0.5984P] where P = (Fo2 + 2Fc2)/3
3013 reflections(Δ/σ)max = 0.001
195 parametersΔρmax = 0.39 e Å3
1 restraintΔρmin = −0.41 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.28353 (5)0.417081 (18)1.029574 (19)0.06245 (12)
O10.1144 (2)0.35958 (10)0.51873 (12)0.0457 (4)
H10.15100.39850.48320.069*
O20.0357 (2)0.24186 (10)0.65725 (13)0.0473 (4)
O30.2696 (3)0.49630 (11)0.27412 (14)0.0651 (6)
N10.2592 (2)0.50906 (11)0.49603 (15)0.0366 (4)
N20.3058 (3)0.57618 (11)0.43355 (15)0.0368 (4)
N30.3899 (3)0.77447 (12)0.10697 (16)0.0422 (5)
C10.2305 (3)0.45105 (13)0.67791 (17)0.0322 (5)
C20.1524 (3)0.37588 (13)0.63313 (16)0.0314 (4)
C30.1127 (3)0.31267 (13)0.70889 (17)0.0328 (5)
C40.1548 (3)0.32447 (14)0.82630 (17)0.0352 (5)
H40.13140.28230.87650.042*
C50.2323 (3)0.39986 (14)0.86841 (17)0.0370 (5)
C60.2695 (3)0.46250 (14)0.79697 (17)0.0375 (5)
H60.32080.51270.82740.045*
C70.2776 (3)0.51825 (13)0.60474 (18)0.0376 (5)
H70.32200.56890.63780.045*
C80.3013 (3)0.56400 (14)0.31958 (18)0.0379 (5)
C90.3367 (3)0.64012 (13)0.25079 (17)0.0321 (5)
C100.2656 (3)0.63897 (14)0.13450 (18)0.0408 (5)
H100.19910.59290.10220.049*
C110.2945 (3)0.70697 (15)0.0670 (2)0.0449 (6)
H110.24450.7055−0.01070.054*
C120.4597 (3)0.77448 (14)0.2190 (2)0.0395 (5)
H120.52870.82070.24840.047*
C130.4358 (3)0.71018 (13)0.29379 (18)0.0350 (5)
H130.48530.71380.37140.042*
C140.0108 (3)0.17267 (14)0.7293 (2)0.0473 (6)
H14A0.12550.15660.77320.071*
H14B−0.03970.12610.68280.071*
H14C−0.07010.18860.78050.071*
H20.331 (4)0.6240 (12)0.472 (2)0.080*
U11U22U33U12U13U23
Br10.1005 (3)0.0644 (2)0.02233 (13)−0.01755 (16)0.01035 (12)−0.00145 (11)
O10.0749 (12)0.0384 (9)0.0233 (7)−0.0087 (8)0.0068 (7)−0.0007 (6)
O20.0711 (11)0.0338 (8)0.0357 (8)−0.0121 (8)0.0053 (8)0.0022 (7)
O30.1248 (17)0.0381 (9)0.0351 (9)−0.0254 (10)0.0207 (10)−0.0054 (8)
N10.0502 (12)0.0317 (10)0.0292 (9)0.0001 (8)0.0104 (8)0.0049 (7)
N20.0560 (12)0.0280 (9)0.0282 (9)−0.0011 (9)0.0123 (8)0.0047 (7)
N30.0509 (12)0.0379 (10)0.0394 (10)0.0030 (9)0.0122 (9)0.0087 (8)
C10.0411 (12)0.0296 (10)0.0269 (10)0.0031 (9)0.0082 (9)0.0025 (8)
C20.0386 (12)0.0318 (11)0.0234 (9)0.0049 (9)0.0043 (8)0.0006 (8)
C30.0373 (12)0.0300 (11)0.0313 (10)0.0017 (9)0.0062 (9)0.0005 (9)
C40.0412 (13)0.0364 (12)0.0296 (10)0.0030 (10)0.0105 (9)0.0059 (9)
C50.0477 (13)0.0427 (13)0.0215 (10)−0.0004 (10)0.0078 (9)−0.0016 (9)
C60.0511 (14)0.0339 (11)0.0279 (10)−0.0022 (10)0.0079 (9)−0.0036 (9)
C70.0523 (14)0.0302 (11)0.0309 (11)−0.0003 (10)0.0089 (10)0.0000 (9)
C80.0502 (14)0.0349 (12)0.0296 (10)−0.0024 (10)0.0100 (10)0.0013 (9)
C90.0390 (12)0.0307 (11)0.0290 (10)0.0036 (9)0.0123 (9)0.0016 (8)
C100.0545 (15)0.0368 (12)0.0306 (11)−0.0033 (11)0.0059 (10)−0.0002 (9)
C110.0582 (16)0.0452 (14)0.0301 (11)0.0021 (12)0.0042 (10)0.0042 (10)
C120.0425 (13)0.0334 (12)0.0437 (12)−0.0004 (10)0.0108 (10)0.0014 (10)
C130.0401 (12)0.0361 (12)0.0295 (10)0.0031 (9)0.0080 (9)0.0001 (9)
C140.0624 (16)0.0335 (12)0.0482 (14)−0.0057 (11)0.0158 (12)0.0047 (11)
Br1—C51.895 (2)C4—C51.386 (3)
O1—C21.356 (2)C4—H40.9300
O1—H10.8200C5—C61.363 (3)
O2—C31.360 (3)C6—H60.9300
O2—C141.421 (3)C7—H70.9300
O3—C81.207 (3)C8—C91.505 (3)
N1—C71.275 (3)C9—C101.385 (3)
N1—N21.375 (2)C9—C131.386 (3)
N2—C81.353 (3)C10—C111.381 (3)
N2—H20.889 (10)C10—H100.9300
N3—C111.330 (3)C11—H110.9300
N3—C121.336 (3)C12—C131.381 (3)
C1—C21.394 (3)C12—H120.9300
C1—C61.397 (3)C13—H130.9300
C1—C71.454 (3)C14—H14A0.9600
C2—C31.409 (3)C14—H14B0.9600
C3—C41.380 (3)C14—H14C0.9600
C2—O1—H1109.5N1—C7—H7119.4
C3—O2—C14117.41 (17)C1—C7—H7119.4
C7—N1—N2117.18 (18)O3—C8—N2122.6 (2)
C8—N2—N1117.15 (18)O3—C8—C9121.04 (19)
C8—N2—H2127 (2)N2—C8—C9116.37 (18)
N1—N2—H2116 (2)C10—C9—C13117.73 (19)
C11—N3—C12116.57 (19)C10—C9—C8116.78 (19)
C2—C1—C6119.70 (19)C13—C9—C8125.48 (19)
C2—C1—C7122.19 (18)C11—C10—C9119.3 (2)
C6—C1—C7118.10 (19)C11—C10—H10120.4
O1—C2—C1122.99 (18)C9—C10—H10120.4
O1—C2—C3117.65 (18)N3—C11—C10123.6 (2)
C1—C2—C3119.35 (18)N3—C11—H11118.2
O2—C3—C4124.68 (19)C10—C11—H11118.2
O2—C3—C2115.10 (18)N3—C12—C13124.1 (2)
C4—C3—C2120.20 (19)N3—C12—H12118.0
C3—C4—C5119.18 (19)C13—C12—H12118.0
C3—C4—H4120.4C12—C13—C9118.7 (2)
C5—C4—H4120.4C12—C13—H13120.7
C6—C5—C4121.76 (19)C9—C13—H13120.7
C6—C5—Br1119.16 (16)O2—C14—H14A109.5
C4—C5—Br1119.06 (16)O2—C14—H14B109.5
C5—C6—C1119.8 (2)H14A—C14—H14B109.5
C5—C6—H6120.1O2—C14—H14C109.5
C1—C6—H6120.1H14A—C14—H14C109.5
N1—C7—C1121.2 (2)H14B—C14—H14C109.5
D—H···AD—HH···AD···AD—H···A
N2—H2···N3i0.89 (1)2.26 (1)3.126 (3)166 (3)
O1—H1···N10.821.932.643 (2)145.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯N3i0.889 (10)2.255 (13)3.126 (3)166 (3)
O1—H1⋯N10.821.932.643 (2)145

Symmetry code: (i) .

  10 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Structure-activity relationships of novel iron chelators for the treatment of iron overload disease: the methyl pyrazinylketone isonicotinoyl hydrazone series.

Authors:  Danuta S Kalinowski; Philip C Sharpe; Paul V Bernhardt; Des R Richardson
Journal:  J Med Chem       Date:  2007-12-27       Impact factor: 7.446

3.  3-Hydr-oxy-N'-(2-hydroxy-benzyl-idene)benzohydrazide.

Authors:  San-Jun Peng; Hai-Yun Hou
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-09-06

4.  N'-(2-Fluoro-benzo-yl)benzohydrazide.

Authors:  Krzysztof Ejsmont; Muhammad Zareef; Muhammad Arfan; Sarfaraz A Bashir; Jacek Zaleski
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-21

5.  Application of quantitative structure-activity relationships to the modeling of antitubercular compounds. 1. The hydrazide family.

Authors:  Cristina Ventura; Filomena Martins
Journal:  J Med Chem       Date:  2008-01-05       Impact factor: 7.446

6.  Diarylmethyloxime and hydrazone derivatives with 5-indolyl moieties as potent inhibitors of tubulin polymerization.

Authors:  Concepción Alvarez; Raquel Alvarez; Purificación Corchete; José Luis López; Concepción Pérez-Melero; Rafael Peláez; Manuel Medarde
Journal:  Bioorg Med Chem       Date:  2008-04-26       Impact factor: 3.641

7.  (E)-N'-[1-(4-Amino-phen-yl)ethyl-idene]benzohydrazide.

Authors:  Shang Shan; Yu-Liang Tian; Shan-Heng Wang; Wen-Long Wang; Ying-Li Xu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-06-28

8.  2-Hydr-oxy-(2-methyl-1H-indol-3-ylmethyl-idene)benzohydrazide ethanol solvate.

Authors:  Wagee A Yehye; Azhar Ariffin; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-03

9.  2-Meth-oxy-N'-(2-methoxy-benzyl-idene)benzohydrazide.

Authors:  Jiu-Fu Lu; Suo-Tian Min; Xiao-Hui Ji; Zhong-Hai Dang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-06

10.  4-Chloro-N'-[(Z)-4-nitro-benzyl-idene]benzohydrazide monohydrate.

Authors:  Hoong-Kun Fun; P S Patil; Jyothi N Rao; B Kalluraya; Suchada Chantrapromma
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-06
  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.