Literature DB >> 21201158

(S)-(-)-6-(4-Bromo-phen-yl)-2,3,5,6-tetra-hydro-thia-zolo[2,3-b]imidazolium hydrogen oxalate.

Thomas Minor1, Maksymilian Chruszcz.   

Abstract

The structure of the title compound, C(11)H(12)BrN(2)S(+)·C(2)HO(4) (-) (common name 6-bromo-levamisole n class="Chemical">hydrogen oxalate), is stabilized mainly by hydrogen bonds. Hydrogen oxalate anions form parallel coplanar chains via O-H⋯O hydrogen bonds, while there are N-H⋯O hydrogen-bonding inter-actions between the 6-bromo-levamisole cations and oxalate anions. Both five-membered rings from the 6-bromo-levamisole mol-ecule have a twist conformation. The mol-ecule has an extended conformation, with the 4-bromo-phenyl substituent positioned equatorially with N-C-C-C and C-C-C-C torsion angles of 39.8 (3) and 100.4 (3)°, respectively.

Entities:  

Year:  2008        PMID: 21201158      PMCID: PMC2959238          DOI: 10.1107/S1600536808029085

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background information, see: Denier et al. (2002 ▶); Lee et al. (1975 ▶); Luo et al. (2000 ▶).

Experimental

Crystal data

C11H12BrN2S+·C2HO4 − M = 373.22 Orthorhombic, a = 5.615 (1) Å b = 8.256 (1) Å c = 32.539 (1) Å V = 1508.4 (3) Å3 Z = 4 Mo Kα radiation μ = 2.88 mm−1 T = 89 (2) K 0.50 × 0.03 × 0.03 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (Otwinowski et al., 2003 ▶) T min = 0.90, T max = 0.92 39658 measured reflections 4061 independent reflections 3438 reflections with I > 2σ(I) R int = 0.081

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.074 S = 1.10 4061 reflections 230 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.67 e Å−3 Δρmin = −0.51 e Å−3 Absolute structure: Flack (1983 ▶), 1863 Friedel pairs Flack parameter: −0.018 (7) Data collection: HKL-2000 (Otwinowski & Minor, 1997 ▶); cell refinement: HKL-2000; data reduction: HKL-2000; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶) and HKL-3000SM (n class="Species">Minor et al., 2006 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶) and HKL-3000SM; molecular graphics: HKL-3000SM, Mercury (Macrae et al., 2006 ▶), ORTEPIII (Burnett & Johnson, 1996 ▶) and ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: HKL-3000SM. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808029085/fl2215sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808029085/fl2215Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H12BrN2S+·C2HO4Dx = 1.643 Mg m3
Mr = 373.22Melting point: 465 K
Orthorhombic, P212121Mo Kα radiation, λ = 0.71074 Å
Hall symbol: P 2ac 2abCell parameters from 39658 reflections
a = 5.615 (1) Åθ = 2.6–29.1°
b = 8.256 (1) ŵ = 2.88 mm1
c = 32.539 (1) ÅT = 89 K
V = 1508.4 (3) Å3Needle, colourless
Z = 40.50 × 0.03 × 0.03 mm
F(000) = 752
Rigaku R-AXIS RAPID diffractometer4061 independent reflections
Radiation source: fine-focus sealed tube3438 reflections with I > 2σ(I)
graphiteRint = 0.081
Detector resolution: 10 pixels mm-1θmax = 29.1°, θmin = 2.6°
ω scans with χ offseth = −7→7
Absorption correction: multi-scan (Otwinowski et al., 2003)k = −11→11
Tmin = 0.90, Tmax = 0.92l = −44→44
39658 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.032H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.074w = 1/[σ2(Fo2) + (0.0326P)2 + 0.8007P] where P = (Fo2 + 2Fc2)/3
S = 1.10(Δ/σ)max = 0.001
4061 reflectionsΔρmax = 0.67 e Å3
230 parametersΔρmin = −0.51 e Å3
0 restraintsAbsolute structure: Flack (1983), 1686 Friedel pairs?
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.018 (7)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
Br10.32101 (6)0.56744 (4)1.059826 (8)0.03817 (9)
S10.35196 (13)0.49266 (9)0.76858 (2)0.02854 (14)
N20.2692 (4)0.4064 (3)0.84952 (6)0.0204 (4)
C110.2064 (4)0.4764 (3)0.81524 (7)0.0196 (5)
C70.0668 (4)0.4192 (3)0.87900 (7)0.0198 (5)
H7−0.02670.31900.87810.024*
N1−0.0024 (4)0.5521 (3)0.81664 (6)0.0201 (4)
C8−0.0808 (4)0.5585 (3)0.85977 (7)0.0211 (5)
H8A−0.25050.53870.86220.025*
H8B−0.04270.66200.87230.025*
C9−0.0363 (6)0.6744 (4)0.78469 (8)0.0261 (6)
C10.1407 (4)0.4519 (3)0.92285 (7)0.0208 (5)
C20.3255 (5)0.5587 (3)0.93230 (7)0.0247 (5)
C100.0970 (6)0.6059 (4)0.74766 (9)0.0329 (7)
C30.3820 (5)0.5913 (4)0.97307 (9)0.0307 (6)
C50.0649 (5)0.4154 (4)0.99535 (9)0.0313 (6)
C60.0123 (6)0.3807 (4)0.95449 (9)0.0288 (6)
C40.2489 (5)0.5198 (3)1.00383 (8)0.0272 (6)
O30.8027 (3)−0.0585 (2)0.84464 (5)0.0197 (3)
O40.6388 (3)0.1887 (2)0.84329 (6)0.0238 (4)
C1B0.6295 (4)0.0378 (3)0.84479 (7)0.0172 (5)
C2B0.3822 (4)−0.0442 (3)0.84594 (7)0.0186 (5)
O10.2089 (3)0.0602 (2)0.84707 (6)0.0279 (4)
O20.3598 (3)−0.1898 (2)0.84549 (7)0.0320 (5)
H20.405 (6)0.611 (4)0.9106 (11)0.040 (10)*
H5−0.032 (7)0.372 (5)1.0134 (12)0.051 (11)*
H10B0.158 (8)0.694 (5)0.7302 (12)0.058 (11)*
H9A−0.201 (7)0.684 (4)0.7791 (9)0.027 (8)*
H30.500 (7)0.655 (4)0.9791 (10)0.037 (9)*
H9B0.031 (6)0.780 (4)0.7948 (9)0.027 (8)*
H10A0.009 (7)0.530 (5)0.7315 (12)0.052 (11)*
H6−0.104 (7)0.305 (5)0.9487 (10)0.045 (10)*
H1O0.042 (9)0.012 (5)0.8512 (14)0.076 (15)*
H1N0.361 (7)0.327 (4)0.8501 (11)0.044 (10)*
U11U22U33U12U13U23
Br10.0587 (2)0.03403 (15)0.02182 (11)0.00178 (15)−0.00718 (13)−0.00204 (11)
S10.0306 (3)0.0314 (3)0.0237 (3)0.0028 (3)0.0062 (3)−0.0047 (2)
N20.0192 (10)0.0191 (11)0.0230 (9)0.0027 (8)−0.0002 (8)−0.0023 (8)
C110.0207 (11)0.0133 (12)0.0248 (11)−0.0011 (9)−0.0004 (9)−0.0053 (8)
C70.0188 (11)0.0176 (12)0.0230 (11)0.0011 (10)0.0009 (9)−0.0003 (9)
N10.0192 (9)0.0205 (11)0.0206 (9)0.0028 (9)−0.0001 (7)−0.0001 (8)
C80.0186 (11)0.0235 (12)0.0212 (10)0.0031 (11)0.0009 (8)0.0011 (10)
C90.0315 (16)0.0259 (14)0.0209 (12)0.0032 (12)−0.0035 (11)0.0018 (10)
C10.0212 (12)0.0186 (12)0.0225 (10)0.0015 (10)−0.0018 (9)0.0009 (9)
C20.0248 (12)0.0240 (12)0.0254 (11)−0.0056 (12)0.0014 (10)−0.0017 (9)
C100.0430 (18)0.0332 (16)0.0225 (12)0.0072 (13)−0.0009 (12)−0.0022 (11)
C30.0328 (16)0.0310 (16)0.0282 (13)−0.0079 (12)−0.0028 (11)−0.0046 (11)
C50.0358 (15)0.0316 (16)0.0263 (12)−0.0052 (13)0.0022 (11)0.0044 (12)
C60.0315 (15)0.0262 (14)0.0285 (13)−0.0081 (12)−0.0030 (11)0.0025 (11)
C40.0369 (14)0.0251 (13)0.0195 (11)0.0047 (11)−0.0038 (10)0.0006 (9)
O30.0130 (7)0.0178 (7)0.0285 (8)0.0007 (7)0.0008 (6)−0.0009 (7)
O40.0174 (9)0.0172 (8)0.0368 (9)−0.0001 (7)−0.0003 (8)−0.0004 (7)
C1B0.0153 (10)0.0211 (13)0.0153 (9)0.0003 (9)0.0006 (8)−0.0010 (8)
C2B0.0153 (11)0.0214 (13)0.0191 (10)0.0004 (9)−0.0011 (8)−0.0012 (9)
O10.0113 (8)0.0192 (8)0.0532 (11)0.0004 (7)0.0000 (7)−0.0015 (9)
O20.0170 (9)0.0183 (9)0.0606 (13)−0.0004 (7)0.0001 (9)−0.0025 (9)
Br1—C41.908 (3)C1—C21.396 (4)
S1—C111.729 (2)C2—C31.390 (3)
S1—C101.840 (3)C2—H20.94 (4)
N2—C111.305 (3)C10—H10B0.98 (4)
N2—C71.491 (3)C10—H10A0.96 (4)
N2—H1N0.83 (4)C3—C41.382 (4)
C11—N11.329 (3)C3—H30.87 (4)
C7—C11.510 (3)C5—C41.373 (4)
C7—C81.549 (3)C5—C61.392 (4)
C7—H70.9800C5—H50.88 (4)
N1—C91.461 (3)C6—H60.92 (4)
N1—C81.472 (3)O3—C1B1.257 (3)
C8—H8A0.9700O4—C1B1.248 (3)
C8—H8B0.9700C1B—C2B1.546 (3)
C9—C101.527 (4)C2B—O21.208 (3)
C9—H9A0.95 (4)C2B—O11.300 (3)
C9—H9B1.00 (3)O1—H1O1.03 (5)
C1—C61.387 (4)
C11—S1—C1089.80 (13)C2—C1—C7121.7 (2)
C11—N2—C7108.2 (2)C3—C2—C1120.2 (2)
C11—N2—H1N122 (2)C3—C2—H2121 (2)
C7—N2—H1N121 (3)C1—C2—H2118 (2)
N2—C11—N1114.6 (2)C9—C10—S1106.10 (19)
N2—C11—S1131.1 (2)C9—C10—H10B111 (2)
N1—C11—S1114.23 (18)S1—C10—H10B109 (3)
N2—C7—C1114.3 (2)C9—C10—H10A115 (2)
N2—C7—C8101.55 (19)S1—C10—H10A106 (2)
C1—C7—C8113.3 (2)H10B—C10—H10A110 (3)
N2—C7—H7109.1C4—C3—C2119.0 (3)
C1—C7—H7109.1C4—C3—H3121 (2)
C8—C7—H7109.1C2—C3—H3120 (2)
C11—N1—C9114.5 (2)C4—C5—C6118.7 (3)
C11—N1—C8108.2 (2)C4—C5—H5126 (3)
C9—N1—C8127.9 (2)C6—C5—H5115 (3)
N1—C8—C7101.46 (19)C1—C6—C5120.8 (3)
N1—C8—H8A111.5C1—C6—H6120 (2)
C7—C8—H8A111.5C5—C6—H6119 (2)
N1—C8—H8B111.5C5—C4—C3122.0 (3)
C7—C8—H8B111.5C5—C4—Br1118.7 (2)
H8A—C8—H8B109.3C3—C4—Br1119.3 (2)
N1—C9—C10104.0 (2)O4—C1B—O3126.8 (2)
N1—C9—H9A108.6 (19)O4—C1B—C2B118.5 (2)
C10—C9—H9A110.9 (18)O3—C1B—C2B114.69 (19)
N1—C9—H9B108.4 (17)O2—C2B—O1125.6 (2)
C10—C9—H9B113.1 (18)O2—C2B—C1B121.9 (2)
H9A—C9—H9B111 (3)O1—C2B—C1B112.4 (2)
C6—C1—C2119.3 (2)C2B—O1—H1O115 (3)
C6—C1—C7118.9 (2)
C7—N2—C11—N16.2 (3)N2—C7—C1—C239.8 (3)
C7—N2—C11—S1−175.80 (19)C8—C7—C1—C2−75.9 (3)
C10—S1—C11—N2179.2 (3)C6—C1—C2—C30.9 (4)
C10—S1—C11—N1−2.8 (2)C7—C1—C2—C3177.2 (2)
C11—N2—C7—C1−141.1 (2)N1—C9—C10—S1−32.9 (3)
C11—N2—C7—C8−18.8 (2)C11—S1—C10—C921.4 (2)
N2—C11—N1—C9159.8 (2)C1—C2—C3—C4−1.6 (4)
S1—C11—N1—C9−18.5 (3)C2—C1—C6—C50.4 (4)
N2—C11—N1—C810.3 (3)C7—C1—C6—C5−176.0 (3)
S1—C11—N1—C8−168.00 (17)C4—C5—C6—C1−0.9 (5)
C11—N1—C8—C7−21.0 (3)C6—C5—C4—C30.2 (4)
C9—N1—C8—C7−165.2 (2)C6—C5—C4—Br1180.0 (2)
N2—C7—C8—N123.0 (2)C2—C3—C4—C51.1 (4)
C1—C7—C8—N1146.1 (2)C2—C3—C4—Br1−178.7 (2)
C11—N1—C9—C1033.8 (3)O4—C1B—C2B—O2176.5 (2)
C8—N1—C9—C10176.1 (2)O3—C1B—C2B—O2−2.1 (3)
N2—C7—C1—C6−143.9 (3)O4—C1B—C2B—O1−3.0 (3)
C8—C7—C1—C6100.4 (3)O3—C1B—C2B—O1178.4 (2)
D—H···AD—HH···AD···AD—H···A
O1—H1O···O3i1.03 (5)1.48 (5)2.483 (2)164 (4)
N2—H1N···O40.83 (4)1.95 (4)2.753 (3)163 (4)
N2—H1N···O10.83 (4)2.37 (4)2.879 (3)120 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1O⋯O3i1.03 (5)1.48 (5)2.483 (2)164 (4)
N2—H1N⋯O40.83 (4)1.95 (4)2.753 (3)163 (4)
N2—H1N⋯O10.83 (4)2.37 (4)2.879 (3)120 (3)

Symmetry code: (i) .

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