Literature DB >> 21201118

2,2'-[Biphenyl-2,2'-diylbis(-oxy)]diacetic acid monohydrate.

Muhammad Rabnawaz, Qamar Ali, Muhammad Raza Shah, Kuldip Singh.   

Abstract

In the crystal structure of the title compound, C(16)H(14)O(6)·H(2)O, the dihedral angle between the benzene rings is 60.8 (3)°. Mol-ecules are linked through a bifurcated O-H⋯O hydrogen bond, forming a zigzag chain along the b axis. The chains are further linked by O-H⋯O hydrogen bonds mediated by water mol-ecules.

Entities:  

Year:  2008        PMID: 21201118      PMCID: PMC2959279          DOI: 10.1107/S160053680802833X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of related compounds, see: Ali, Hussain et al. (2008 ▶); Ali, Ibad et al. (2008 ▶); Ali, Shah & VanDerveer (2008 ▶); Ibad et al. (2008 ▶). For biological applications, see: Baudry et al. (2006 ▶); Kamoda et al. (2006 ▶); Litvinchuk et al. (2004 ▶); MacNeil & Decken (1999 ▶); Park (2000 ▶); Sisson et al. (2006 ▶).

Experimental

Crystal data

C16H14O6·H2O M = 320.29 Monoclinic, a = 13.7590 (17) Å b = 6.7875 (9) Å c = 16.446 (2) Å β = 104.698 (2)° V = 1485.6 (3) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 150 (2) K 0.17 × 0.13 × 0.08 mm

Data collection

Bruker APEX 2000 CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.981, T max = 0.991 10352 measured reflections 2612 independent reflections 1555 reflections with I > 2σ(I) R int = 0.078

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.088 S = 0.85 2612 reflections 216 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.16 e Å−3 Δρmin = −0.17 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680802833X/is2319sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680802833X/is2319Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H14O6·H2OF(000) = 672
Mr = 320.29Dx = 1.432 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 765 reflections
a = 13.7590 (17) Åθ = 2.6–23.3°
b = 6.7875 (9) ŵ = 0.11 mm1
c = 16.446 (2) ÅT = 150 K
β = 104.698 (2)°Block, colourless
V = 1485.6 (3) Å30.17 × 0.13 × 0.08 mm
Z = 4
Bruker APEX 2000 CCD area-detector diffractometer2612 independent reflections
Radiation source: fine-focus sealed tube1555 reflections with I > 2σ(I)
graphiteRint = 0.078
φω scansθmax = 25.0°, θmin = 1.5°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −15→16
Tmin = 0.981, Tmax = 0.991k = −8→8
10352 measured reflectionsl = −19→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.088H atoms treated by a mixture of independent and constrained refinement
S = 0.85w = 1/[σ2(Fo2) + (0.0212P)2] where P = (Fo2 + 2Fc2)/3
2612 reflections(Δ/σ)max < 0.001
216 parametersΔρmax = 0.16 e Å3
3 restraintsΔρmin = −0.17 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.66330 (12)0.7028 (2)0.14229 (10)0.0345 (5)
O20.77830 (14)0.9862 (3)0.10441 (13)0.0575 (6)
O30.64570 (12)1.1309 (3)0.01909 (11)0.0425 (5)
H30.68761.21870.01580.064*
O40.81532 (12)0.4297 (2)0.13157 (10)0.0358 (5)
O50.74938 (13)0.4148 (3)−0.03373 (11)0.0401 (5)
O60.88580 (13)0.5688 (3)−0.05041 (11)0.0537 (6)
H60.85640.5573−0.10160.080*
C10.60904 (18)0.5402 (4)0.15417 (15)0.0291 (6)
C20.50827 (18)0.5152 (4)0.11531 (15)0.0324 (7)
H20.47380.60840.07520.039*
C30.45771 (19)0.3522 (4)0.13553 (15)0.0336 (7)
H3A0.38830.33520.10940.040*
C40.50694 (18)0.2161 (4)0.19259 (15)0.0354 (7)
H40.47240.10380.20530.043*
C50.60788 (19)0.2438 (4)0.23173 (15)0.0336 (7)
H50.64150.15090.27250.040*
C60.66082 (18)0.4036 (4)0.21279 (15)0.0281 (6)
C70.76791 (18)0.4314 (3)0.25873 (15)0.0294 (6)
C80.7942 (2)0.4382 (4)0.34570 (17)0.0396 (7)
H80.74300.42840.37490.048*
C90.8932 (2)0.4588 (4)0.39121 (17)0.0445 (8)
H90.90960.46340.45090.053*
C100.9674 (2)0.4726 (4)0.34935 (18)0.0428 (7)
H101.03530.48780.38030.051*
C110.94422 (19)0.4646 (4)0.26314 (17)0.0383 (7)
H110.99620.47230.23470.046*
C120.84508 (19)0.4451 (4)0.21760 (16)0.0319 (6)
C130.61476 (18)0.8429 (3)0.08196 (15)0.0314 (6)
H13A0.56000.90810.10090.038*
H13B0.58520.77690.02760.038*
C140.6906 (2)0.9920 (4)0.07165 (16)0.0326 (6)
C150.88486 (18)0.4850 (4)0.08631 (16)0.0394 (7)
H15A0.94160.39060.09700.047*
H15B0.91190.61780.10390.047*
C160.8314 (2)0.4852 (4)−0.00470 (17)0.0352 (7)
O70.81871 (18)0.9230 (3)0.28791 (13)0.0573 (6)
H7A0.814 (2)1.003 (3)0.2488 (15)0.086*
H7B0.795 (2)0.818 (3)0.2670 (18)0.086*
U11U22U33U12U13U23
O10.0320 (11)0.0300 (10)0.0373 (11)−0.0022 (9)0.0012 (8)0.0097 (9)
O20.0260 (11)0.0528 (13)0.0867 (17)−0.0005 (10)0.0012 (11)0.0256 (12)
O30.0379 (12)0.0388 (12)0.0470 (12)−0.0057 (9)0.0037 (10)0.0132 (10)
O40.0298 (10)0.0457 (12)0.0344 (11)−0.0067 (9)0.0127 (9)−0.0042 (9)
O50.0323 (11)0.0433 (12)0.0435 (12)−0.0070 (10)0.0076 (9)0.0037 (9)
O60.0405 (12)0.0756 (15)0.0449 (13)−0.0172 (11)0.0108 (10)0.0141 (12)
C10.0306 (15)0.0295 (16)0.0297 (16)−0.0015 (13)0.0124 (13)−0.0012 (13)
C20.0333 (16)0.0354 (16)0.0282 (16)0.0033 (13)0.0069 (13)0.0061 (13)
C30.0268 (16)0.0404 (17)0.0340 (17)−0.0015 (14)0.0082 (13)−0.0039 (14)
C40.0329 (17)0.0366 (17)0.0399 (18)−0.0051 (14)0.0151 (14)−0.0011 (14)
C50.0333 (17)0.0367 (17)0.0332 (16)0.0060 (13)0.0128 (13)0.0077 (13)
C60.0293 (15)0.0315 (16)0.0248 (15)0.0030 (13)0.0096 (12)0.0026 (13)
C70.0311 (16)0.0245 (15)0.0312 (16)0.0016 (12)0.0057 (13)0.0043 (12)
C80.0394 (18)0.0409 (18)0.0387 (18)0.0030 (14)0.0101 (14)0.0079 (14)
C90.0443 (19)0.0484 (19)0.0352 (18)0.0009 (16)−0.0004 (15)0.0086 (15)
C100.0321 (16)0.0431 (19)0.0453 (19)0.0002 (15)−0.0048 (14)0.0042 (15)
C110.0277 (16)0.0381 (17)0.0480 (19)0.0023 (14)0.0079 (14)0.0029 (14)
C120.0323 (16)0.0286 (16)0.0336 (17)0.0022 (13)0.0061 (13)0.0028 (13)
C130.0332 (16)0.0282 (15)0.0306 (16)0.0018 (13)0.0039 (13)0.0071 (13)
C140.0362 (17)0.0300 (16)0.0320 (17)0.0057 (14)0.0094 (13)0.0074 (13)
C150.0295 (15)0.0489 (19)0.0411 (18)−0.0045 (14)0.0113 (14)0.0051 (14)
C160.0322 (16)0.0340 (17)0.0416 (18)0.0028 (14)0.0134 (14)0.0062 (14)
O70.0706 (15)0.0440 (13)0.0565 (15)0.0038 (13)0.0144 (13)−0.0040 (11)
O1—C11.374 (3)C6—C71.488 (3)
O1—C131.414 (3)C7—C81.384 (3)
O2—C141.191 (3)C7—C121.399 (3)
O3—C141.322 (3)C8—C91.386 (3)
O3—H30.8400C8—H80.9500
O4—C121.374 (3)C9—C101.371 (3)
O4—C151.404 (3)C9—H90.9500
O5—C161.207 (3)C10—C111.373 (3)
O6—C161.317 (3)C10—H100.9500
O6—H60.8400C11—C121.386 (3)
C1—C21.382 (3)C11—H110.9500
C1—C61.396 (3)C13—C141.494 (3)
C2—C31.391 (3)C13—H13A0.9900
C2—H20.9500C13—H13B0.9900
C3—C41.367 (3)C15—C161.491 (3)
C3—H3A0.9500C15—H15A0.9900
C4—C51.387 (3)C15—H15B0.9900
C4—H40.9500O7—H7A0.833 (16)
C5—C61.385 (3)O7—H7B0.820 (16)
C5—H50.9500
C1—O1—C13117.58 (19)C8—C9—H9120.3
C14—O3—H3109.5C9—C10—C11120.6 (3)
C12—O4—C15117.41 (19)C9—C10—H10119.7
C16—O6—H6109.5C11—C10—H10119.7
O1—C1—C2123.4 (2)C10—C11—C12120.0 (3)
O1—C1—C6115.6 (2)C10—C11—H11120.0
C2—C1—C6120.9 (2)C12—C11—H11120.0
C1—C2—C3119.4 (2)O4—C12—C11124.0 (2)
C1—C2—H2120.3O4—C12—C7115.4 (2)
C3—C2—H2120.3C11—C12—C7120.6 (2)
C4—C3—C2120.7 (2)O1—C13—C14108.4 (2)
C4—C3—H3A119.7O1—C13—H13A110.0
C2—C3—H3A119.7C14—C13—H13A110.0
C3—C4—C5119.4 (3)O1—C13—H13B110.0
C3—C4—H4120.3C14—C13—H13B110.0
C5—C4—H4120.3H13A—C13—H13B108.4
C6—C5—C4121.5 (2)O2—C14—O3124.9 (2)
C6—C5—H5119.2O2—C14—C13125.7 (2)
C4—C5—H5119.2O3—C14—C13109.5 (2)
C5—C6—C1118.0 (2)O4—C15—C16107.7 (2)
C5—C6—C7119.7 (2)O4—C15—H15A110.2
C1—C6—C7122.2 (2)C16—C15—H15A110.2
C8—C7—C12117.8 (2)O4—C15—H15B110.2
C8—C7—C6119.6 (2)C16—C15—H15B110.2
C12—C7—C6122.6 (2)H15A—C15—H15B108.5
C7—C8—C9121.6 (3)O5—C16—O6123.7 (3)
C7—C8—H8119.2O5—C16—C15124.8 (2)
C9—C8—H8119.2O6—C16—C15111.5 (2)
C10—C9—C8119.4 (3)H7A—O7—H7B107 (2)
C10—C9—H9120.3
C13—O1—C1—C2−5.2 (3)C6—C7—C8—C9178.3 (2)
C13—O1—C1—C6178.4 (2)C7—C8—C9—C10−0.1 (4)
O1—C1—C2—C3−175.6 (2)C8—C9—C10—C11−0.5 (4)
C6—C1—C2—C30.5 (4)C9—C10—C11—C120.9 (4)
C1—C2—C3—C4−0.7 (4)C15—O4—C12—C11−16.4 (3)
C2—C3—C4—C51.3 (4)C15—O4—C12—C7166.3 (2)
C3—C4—C5—C6−1.7 (4)C10—C11—C12—O4−177.9 (2)
C4—C5—C6—C11.5 (4)C10—C11—C12—C7−0.7 (4)
C4—C5—C6—C7177.6 (2)C8—C7—C12—O4177.5 (2)
O1—C1—C6—C5175.5 (2)C6—C7—C12—O4−0.5 (3)
C2—C1—C6—C5−0.9 (4)C8—C7—C12—C110.1 (4)
O1—C1—C6—C7−0.5 (3)C6—C7—C12—C11−177.9 (2)
C2—C1—C6—C7−176.9 (2)C1—O1—C13—C14−172.89 (19)
C5—C6—C7—C8−54.7 (3)O1—C13—C14—O24.7 (4)
C1—C6—C7—C8121.3 (3)O1—C13—C14—O3−176.4 (2)
C5—C6—C7—C12123.2 (3)C12—O4—C15—C16−171.5 (2)
C1—C6—C7—C12−60.8 (3)O4—C15—C16—O5−12.6 (4)
C12—C7—C8—C90.3 (4)O4—C15—C16—O6168.7 (2)
D—H···AD—HH···AD···AD—H···A
O3—H3···O5i0.841.872.671 (2)158
O3—H3···O4i0.842.663.285 (2)133
O6—H6···O7ii0.841.762.584 (3)165
O7—H7A···O20.83 (2)2.30 (2)2.958 (3)136 (2)
O7—H7B···O10.82 (2)2.50 (2)3.153 (3)138 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯O5i0.841.872.671 (2)158
O3—H3⋯O4i0.842.663.285 (2)133
O6—H6⋯O7ii0.841.762.584 (3)165
O7—H7A⋯O20.833 (16)2.30 (2)2.958 (3)136 (2)
O7—H7B⋯O10.820 (16)2.50 (2)3.153 (3)138 (3)

Symmetry codes: (i) ; (ii) .

  8 in total

1.  Thermodynamic and kinetic stability of synthetic multifunctional rigid-rod beta-barrel pores: evidence for supramolecular catalysis.

Authors:  Svetlana Litvinchuk; Guillaume Bollot; Jiri Mareda; Abhigyan Som; Dawn Ronan; Muhammad Raza Shah; Philippe Perrottet; Naomi Sakai; Stefan Matile
Journal:  J Am Chem Soc       Date:  2004-08-18       Impact factor: 15.419

2.  In vitro activity of a novel antimicrobial agent, TG44, for treatment of Helicobacter pylori infection.

Authors:  Osamu Kamoda; Kinsei Anzai; Jun-ichi Mizoguchi; Masatoshi Shiojiri; Toshiharu Yanagi; Takeshi Nishino; Shigeru Kamiya
Journal:  Antimicrob Agents Chemother       Date:  2006-09       Impact factor: 5.191

Review 3.  Synthetic ion channels and pores (2004-2005).

Authors:  Adam L Sisson; Muhammad Raza Shah; Sheshanath Bhosale; Stefan Matile
Journal:  Chem Soc Rev       Date:  2006-05-18       Impact factor: 54.564

4.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

5.  Di-tert-butyl 2,2'-(biphenyl-2,2'-diyl-dioxy)diacetate.

Authors:  Qamar Ali; Farooq Ibad; Muhammad Raza Shah; Donald Vanderveer
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-05

6.  4,4'-Diiodo-3,3'-dimethoxy-biphen-yl.

Authors:  Qamar Ali; Muhammad Raza Shah; Donald Vanderveer
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-04-26

7.  4-Iodo-3,3'-dimethoxy-biphen-yl.

Authors:  Qamar Ali; Zahid Hussain; Muhammad Raza Shah; Donald Vanderveer
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-05

8.  2,2'-(Biphenyl-2,2'-diyldi-oxy)diaceto-hydrazide.

Authors:  Farooq Ibad; Asra Mustafa; Muhammad Raza Shah; Donald Vanderveer
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-21
  8 in total
  2 in total

1.  Diethyl 2,2'-(biphenyl-2,2'-diyldi-oxy)diacetate.

Authors:  Qamar Ali; Itrat Anis; Donald Vanderveer; Muhammad Raza Shah
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-10

2.  2,2'-(Biphenyl-4,4'-diyldi-oxy)diacetic acid N,N-dimethyl-formamide solvate.

Authors:  Yu-Juan Cao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-15
  2 in total

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