Literature DB >> 21583551

2,2'-(Biphenyl-4,4'-diyldi-oxy)diacetic acid N,N-dimethyl-formamide solvate.

Yu-Juan Cao1.   

Abstract

In the crystal struture of the title compound, C(16)H(14)O(6)·C(3)H(7)NO, the two crystallographically independent benzene rings are coplanar [dihedral angle = 1.00 (2)°]. The crystal structure is stabilized by O-H⋯O hydrogen bonds between the diacid and the solvate dimethylformamide mol-ecule, resulting in the formation of a zigzag chain structure extending parallel to [001].

Entities:  

Year:  2009        PMID: 21583551      PMCID: PMC2977266          DOI: 10.1107/S1600536809025914

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to biphenyl carbinols and their biological applications, see: Kamoda et al. (2006 ▶); Mikami & Yamanaka (2003 ▶); Sallam et al. (2006 ▶). For the crystal structures of related compounds, see: Rabnawaz et al. (2008 ▶); Tan et al. (2005 ▶). For the preparation of the title compound, see: Hayes & Branch (1943 ▶).

Experimental

Crystal data

C16H14O6·C3H7NO M = 375.37 Orthorhombic, a = 7.7471 (15) Å b = 8.1758 (16) Å c = 28.625 (6) Å V = 1813.1 (6) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 298 K 0.32 × 0.25 × 0.18 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.971, T max = 0.984 9412 measured reflections 2079 independent reflections 1778 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.116 S = 1.05 2079 reflections 246 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.19 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809025914/zl2216sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809025914/zl2216Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H14O6·C3H7NODx = 1.375 Mg m3
Mr = 375.37Melting point = 524.9–525.8 K
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 3913 reflections
a = 7.7471 (15) Åθ = 1.4–27.8°
b = 8.1758 (16) ŵ = 0.11 mm1
c = 28.625 (6) ÅT = 298 K
V = 1813.1 (6) Å3Block, colorless
Z = 40.32 × 0.25 × 0.18 mm
F(000) = 792
Bruker SMART APEXII CCD area-detector diffractometer2079 independent reflections
Radiation source: fine-focus sealed tube1778 reflections with I > 2σ(I)
graphiteRint = 0.028
φ and ω scansθmax = 26.0°, θmin = 1.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 2004)h = −9→9
Tmin = 0.971, Tmax = 0.984k = −10→9
9412 measured reflectionsl = −29→35
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.116H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0655P)2 + 0.2914P] where P = (Fo2 + 2Fc2)/3
2079 reflections(Δ/σ)max = 0.001
246 parametersΔρmax = 0.22 e Å3
0 restraintsΔρmin = −0.19 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.0567 (4)−0.7098 (3)0.65314 (10)0.0437 (7)
C20.0253 (4)−0.5895 (3)0.61484 (10)0.0480 (7)
H2A0.0508−0.64060.58500.058*
H2B−0.0957−0.55880.61480.058*
C30.1124 (3)−0.3291 (3)0.58665 (9)0.0385 (6)
C40.0138 (4)−0.3432 (4)0.54660 (10)0.0508 (8)
H4−0.0507−0.43720.54110.061*
C50.0120 (4)−0.2161 (4)0.51477 (10)0.0506 (8)
H5−0.0555−0.22680.48810.061*
C60.1058 (3)−0.0739 (3)0.52075 (9)0.0355 (6)
C70.2023 (4)−0.0632 (3)0.56174 (9)0.0415 (6)
H70.26640.03080.56750.050*
C80.2051 (4)−0.1875 (3)0.59386 (9)0.0427 (6)
H80.2705−0.17620.62090.051*
C90.1043 (3)0.0598 (3)0.48540 (9)0.0353 (6)
C100.0092 (3)0.0467 (3)0.44397 (9)0.0409 (6)
H10−0.0528−0.04860.43830.049*
C110.0048 (3)0.1697 (4)0.41162 (9)0.0434 (6)
H11−0.06010.15670.38450.052*
C120.0958 (3)0.3135 (3)0.41877 (8)0.0367 (6)
C130.1927 (4)0.3298 (3)0.45907 (9)0.0457 (7)
H130.25580.42480.46450.055*
C140.1950 (4)0.2043 (3)0.49115 (10)0.0481 (7)
H140.26090.21730.51810.058*
C150.1904 (4)0.5669 (3)0.38615 (9)0.0452 (7)
H15A0.30900.53260.39090.054*
H15B0.15790.63980.41140.054*
C160.1717 (4)0.6512 (4)0.33992 (10)0.0480 (7)
C170.8034 (4)0.4650 (3)0.76651 (10)0.0467 (7)
H170.87150.45200.79300.056*
C180.7724 (5)0.1739 (4)0.76798 (13)0.0648 (9)
H18A0.66660.13210.78070.097*
H18B0.85700.18270.79240.097*
H18C0.81390.10090.74420.097*
C190.6242 (5)0.3421 (4)0.70858 (11)0.0618 (9)
H19A0.67220.28330.68260.093*
H19B0.60640.45430.69990.093*
H19C0.51580.29390.71720.093*
N10.7419 (3)0.3344 (3)0.74773 (7)0.0437 (6)
O1−0.0176 (3)−0.8381 (3)0.65378 (8)0.0711 (7)
O20.1679 (3)−0.6642 (3)0.68480 (7)0.0616 (6)
H20.1823−0.73870.70360.092*
O30.1272 (3)−0.4482 (2)0.61989 (6)0.0458 (5)
O40.0795 (3)0.4294 (2)0.38492 (6)0.0468 (5)
O50.0680 (5)0.6151 (4)0.31136 (10)0.1098 (12)
O60.2858 (4)0.7658 (3)0.33427 (8)0.0768 (8)
H60.28340.79820.30720.115*
O70.7798 (3)0.6075 (2)0.75226 (6)0.0565 (6)
U11U22U33U12U13U23
C10.0502 (16)0.0377 (15)0.0433 (15)0.0007 (13)0.0004 (13)0.0008 (13)
C20.0553 (17)0.0427 (16)0.0461 (16)−0.0061 (14)−0.0045 (14)0.0050 (14)
C30.0408 (13)0.0347 (13)0.0399 (13)0.0016 (12)−0.0011 (11)0.0039 (12)
C40.0592 (18)0.0400 (16)0.0533 (16)−0.0170 (15)−0.0174 (14)0.0059 (14)
C50.0581 (18)0.0478 (16)0.0459 (16)−0.0142 (15)−0.0207 (14)0.0058 (14)
C60.0337 (12)0.0357 (13)0.0372 (13)0.0027 (11)0.0011 (11)−0.0001 (12)
C70.0457 (15)0.0375 (14)0.0411 (14)−0.0062 (12)−0.0066 (12)0.0010 (12)
C80.0468 (15)0.0463 (15)0.0350 (13)−0.0014 (14)−0.0063 (12)0.0008 (12)
C90.0333 (12)0.0365 (13)0.0361 (13)0.0013 (11)0.0018 (11)0.0003 (12)
C100.0419 (14)0.0407 (15)0.0400 (14)−0.0089 (13)−0.0011 (12)−0.0023 (12)
C110.0428 (14)0.0536 (17)0.0339 (13)−0.0037 (14)−0.0044 (11)0.0031 (13)
C120.0384 (13)0.0377 (14)0.0340 (13)0.0037 (12)0.0042 (11)0.0033 (11)
C130.0553 (16)0.0371 (14)0.0446 (15)−0.0066 (14)−0.0071 (13)0.0052 (13)
C140.0561 (16)0.0479 (17)0.0403 (15)−0.0079 (15)−0.0119 (13)0.0049 (13)
C150.0533 (16)0.0402 (15)0.0420 (14)0.0025 (14)0.0030 (13)0.0020 (13)
C160.0502 (16)0.0475 (16)0.0462 (16)0.0002 (15)−0.0003 (14)0.0065 (14)
C170.0606 (18)0.0434 (16)0.0360 (14)0.0003 (15)−0.0080 (14)0.0035 (13)
C180.082 (2)0.0402 (17)0.072 (2)0.0019 (17)0.003 (2)0.0110 (16)
C190.068 (2)0.058 (2)0.0588 (19)0.0028 (17)−0.0166 (16)−0.0103 (17)
N10.0493 (13)0.0403 (13)0.0413 (12)0.0008 (11)−0.0014 (11)−0.0021 (10)
O10.0894 (17)0.0499 (13)0.0740 (15)−0.0250 (14)−0.0256 (13)0.0132 (12)
O20.0847 (15)0.0422 (11)0.0579 (12)−0.0134 (12)−0.0230 (12)0.0114 (10)
O30.0523 (11)0.0415 (10)0.0436 (10)−0.0074 (9)−0.0085 (9)0.0107 (9)
O40.0498 (11)0.0469 (11)0.0436 (10)−0.0045 (9)−0.0043 (9)0.0110 (10)
O50.119 (2)0.123 (3)0.0881 (19)−0.058 (2)−0.0515 (19)0.060 (2)
O60.1004 (19)0.0726 (16)0.0573 (14)−0.0360 (16)−0.0152 (14)0.0243 (12)
O70.0860 (16)0.0393 (11)0.0444 (12)−0.0036 (11)−0.0131 (11)0.0042 (9)
C1—O11.197 (3)C12—O41.361 (3)
C1—O21.305 (4)C12—C131.383 (4)
C1—C21.493 (4)C13—C141.377 (4)
C2—O31.407 (3)C13—H130.9300
C2—H2A0.9700C14—H140.9300
C2—H2B0.9700C15—O41.415 (3)
C3—O31.366 (3)C15—C161.499 (4)
C3—C81.377 (4)C15—H15A0.9700
C3—C41.383 (4)C15—H15B0.9700
C4—C51.382 (4)C16—O51.184 (4)
C4—H40.9300C16—O61.298 (4)
C5—C61.382 (4)C17—O71.248 (3)
C5—H50.9300C17—N11.287 (4)
C6—C71.394 (4)C17—H170.9300
C6—C91.489 (4)C18—N11.454 (4)
C7—C81.371 (4)C18—H18A0.9600
C7—H70.9300C18—H18B0.9600
C8—H80.9300C18—H18C0.9600
C9—C141.385 (4)C19—N11.446 (4)
C9—C101.400 (3)C19—H19A0.9600
C10—C111.368 (4)C19—H19B0.9600
C10—H100.9300C19—H19C0.9600
C11—C121.386 (4)O2—H20.8201
C11—H110.9300O6—H60.8200
O1—C1—O2123.9 (3)C13—C12—C11118.8 (2)
O1—C1—C2120.7 (3)C14—C13—C12119.4 (3)
O2—C1—C2115.4 (2)C14—C13—H13120.3
O3—C2—C1112.0 (2)C12—C13—H13120.3
O3—C2—H2A109.2C13—C14—C9123.4 (3)
C1—C2—H2A109.2C13—C14—H14118.3
O3—C2—H2B109.2C9—C14—H14118.3
C1—C2—H2B109.2O4—C15—C16106.5 (2)
H2A—C2—H2B107.9O4—C15—H15A110.4
O3—C3—C8116.8 (2)C16—C15—H15A110.4
O3—C3—C4124.4 (2)O4—C15—H15B110.4
C8—C3—C4118.8 (2)C16—C15—H15B110.4
C5—C4—C3119.3 (3)H15A—C15—H15B108.6
C5—C4—H4120.3O5—C16—O6123.8 (3)
C3—C4—H4120.3O5—C16—C15124.1 (3)
C4—C5—C6123.1 (2)O6—C16—C15112.1 (3)
C4—C5—H5118.5O7—C17—N1125.7 (3)
C6—C5—H5118.5O7—C17—H17117.1
C5—C6—C7116.0 (2)N1—C17—H17117.1
C5—C6—C9121.9 (2)N1—C18—H18A109.5
C7—C6—C9122.0 (2)N1—C18—H18B109.5
C8—C7—C6121.8 (2)H18A—C18—H18B109.5
C8—C7—H7119.1N1—C18—H18C109.5
C6—C7—H7119.1H18A—C18—H18C109.5
C7—C8—C3120.9 (2)H18B—C18—H18C109.5
C7—C8—H8119.5N1—C19—H19A109.5
C3—C8—H8119.5N1—C19—H19B109.5
C14—C9—C10115.7 (2)H19A—C19—H19B109.5
C14—C9—C6122.8 (2)N1—C19—H19C109.5
C10—C9—C6121.6 (2)H19A—C19—H19C109.5
C11—C10—C9122.0 (2)H19B—C19—H19C109.5
C11—C10—H10119.0C17—N1—C19121.4 (2)
C9—C10—H10119.0C17—N1—C18121.4 (2)
C10—C11—C12120.7 (2)C19—N1—C18116.8 (3)
C10—C11—H11119.6C1—O2—H2109.4
C12—C11—H11119.6C3—O3—C2117.8 (2)
O4—C12—C13125.2 (2)C12—O4—C15118.6 (2)
O4—C12—C11116.0 (2)C16—O6—H6109.6
O1—C1—C2—O3−178.9 (3)C9—C10—C11—C120.2 (4)
O2—C1—C2—O31.4 (4)C10—C11—C12—O4−178.6 (2)
O3—C3—C4—C5−178.3 (3)C10—C11—C12—C130.6 (4)
C8—C3—C4—C50.6 (4)O4—C12—C13—C14178.4 (3)
C3—C4—C5—C60.4 (5)C11—C12—C13—C14−0.7 (4)
C4—C5—C6—C7−1.1 (4)C12—C13—C14—C90.0 (5)
C4—C5—C6—C9178.8 (3)C10—C9—C14—C130.8 (4)
C5—C6—C7—C80.7 (4)C6—C9—C14—C13−179.0 (3)
C9—C6—C7—C8−179.1 (3)O4—C15—C16—O57.5 (5)
C6—C7—C8—C30.2 (4)O4—C15—C16—O6−170.6 (2)
O3—C3—C8—C7178.1 (2)O7—C17—N1—C19−4.7 (5)
C4—C3—C8—C7−0.9 (4)O7—C17—N1—C18−178.0 (3)
C5—C6—C9—C14178.9 (3)C8—C3—O3—C2176.0 (2)
C7—C6—C9—C14−1.3 (4)C4—C3—O3—C2−5.0 (4)
C5—C6—C9—C10−0.9 (4)C1—C2—O3—C3179.1 (2)
C7—C6—C9—C10178.9 (2)C13—C12—O4—C1511.2 (4)
C14—C9—C10—C11−0.8 (4)C11—C12—O4—C15−169.7 (2)
C6—C9—C10—C11179.0 (2)C16—C15—O4—C12167.4 (2)
D—H···AD—HH···AD···AD—H···A
O6—H6···O7i0.821.872.685 (3)174
O2—H2···O7ii0.821.812.626 (3)176
C15—H15a···O1iii0.972.443.149 (2)129.0
C17—H17···O1iv0.932.563.248 (3)131
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O6—H6⋯O7i0.821.872.685 (3)174
O2—H2⋯O7ii0.821.812.626 (3)176
C15—H15a⋯O1iii0.972.443.149 (2)129
C17—H17⋯O1iv0.932.563.248 (3)131

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  4 in total

1.  Symmetry breaking in asymmetric catalysis: racemic catalysis to autocatalysis.

Authors:  Koichi Mikami; Masahiro Yamanaka
Journal:  Chem Rev       Date:  2003-08       Impact factor: 60.622

2.  In vitro activity of a novel antimicrobial agent, TG44, for treatment of Helicobacter pylori infection.

Authors:  Osamu Kamoda; Kinsei Anzai; Jun-ichi Mizoguchi; Masatoshi Shiojiri; Toshiharu Yanagi; Takeshi Nishino; Shigeru Kamiya
Journal:  Antimicrob Agents Chemother       Date:  2006-09       Impact factor: 5.191

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  2,2'-[Biphenyl-2,2'-diylbis(-oxy)]diacetic acid monohydrate.

Authors:  Muhammad Rabnawaz; Qamar Ali; Muhammad Raza Shah; Kuldip Singh
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-09-13
  4 in total
  1 in total

1.  2-(Biphenyl-4-yl-oxy)acetic acid.

Authors:  En-Ju Wang; Guang-Ying Chen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-29
  1 in total

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