Literature DB >> 22905022

Dimethyl-ammonium 5-carb-oxy-2-(1-oxo-1λ(5)-pyridin-2-yl)-1H-imidazole-4-car-box-yl-ate.

Chuntao Dai1, Jianhua Nie, Yuehua Lin, Jun Wang.   

Abstract

In the title salt, C(2)H(8)N(+)·C(10)H(6)N(3)O(5) (-), the imidazole-carboxyl-ate anion is essentially planar [maximum deviation from the least-squares plane = 0.046 (5) Å], with a dihedral angle between the rings of 2.7 (2)°. This conformation is maintained by the presence of both intra-molecular carb-oxy-carboxyl-ate O-H⋯O and imidazole-oxide N-H⋯O hydrogen bonds. Iin the crystal, cation-carboxyl-ate N-H⋯O and cation-imidazole N-H⋯N hydrogen bonds result in chains along the b axis.

Entities:  

Year:  2012        PMID: 22905022      PMCID: PMC3415035          DOI: 10.1107/S1600536812033557

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structures of compounds with similar ligands, see: Chen (2008 ▶; Chen et al. (2011 ▶); Sun et al. (2005 ▶). For the synthesis of the ligand, see: Sun et al. (2006 ▶).

Experimental

Crystal data

C2H8N+·C10H6N3O5 − M = 294.27 Monoclinic, a = 10.9690 (18) Å b = 17.305 (3) Å c = 8.0160 (13) Å β = 120.901 (2)° V = 1305.6 (4) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 298 K 0.32 × 0.28 × 0.26 mm

Data collection

Bruker APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.963, T max = 0.970 3782 measured reflections 1419 independent reflections 1204 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.085 S = 1.05 1419 reflections 193 parameters 2 restraints H-atom parameters constrained Δρmax = 0.14 e Å−3 Δρmin = −0.19 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812033557/zs2224sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812033557/zs2224Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812033557/zs2224Isup3.mol Supplementary material file. DOI: 10.1107/S1600536812033557/zs2224Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C2H8N+·C10H6N3O5F(000) = 616
Mr = 294.27Dx = 1.497 Mg m3
Monoclinic, CcMo Kα radiation, λ = 0.71073 Å
Hall symbol: C -2ycCell parameters from 3600 reflections
a = 10.9690 (18) Åθ = 1.3–28.0°
b = 17.305 (3) ŵ = 0.12 mm1
c = 8.0160 (13) ÅT = 298 K
β = 120.901 (2)°Block, colourless
V = 1305.6 (4) Å30.32 × 0.28 × 0.26 mm
Z = 4
Bruker APEXII area-detector diffractometer1419 independent reflections
Radiation source: fine-focus sealed tube1204 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.025
φ and ω scansθmax = 27.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −14→12
Tmin = 0.963, Tmax = 0.970k = −19→21
3782 measured reflectionsl = −8→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.085H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0423P)2P] where P = (Fo2 + 2Fc2)/3
1419 reflections(Δ/σ)max < 0.001
193 parametersΔρmax = 0.14 e Å3
2 restraintsΔρmin = −0.19 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.8048 (3)0.88560 (14)0.6235 (4)0.0435 (6)
C20.6875 (3)0.92371 (14)0.4485 (4)0.0399 (6)
C30.6630 (3)1.00178 (15)0.4067 (4)0.0405 (6)
C40.7352 (3)1.07430 (16)0.5114 (4)0.0462 (7)
C50.4999 (3)0.93154 (13)0.1662 (4)0.0392 (6)
C60.3776 (3)0.90945 (15)−0.0207 (4)0.0408 (6)
C70.3453 (3)0.83297 (16)−0.0743 (4)0.0504 (7)
H70.40410.79450.00950.060*
C80.2281 (4)0.81248 (17)−0.2486 (5)0.0581 (8)
H80.20740.7607−0.28250.070*
C90.1414 (3)0.86974 (19)−0.3729 (4)0.0578 (8)
H90.06100.8570−0.49100.069*
C100.1752 (4)0.94533 (19)−0.3202 (5)0.0584 (8)
H100.11730.9838−0.40470.070*
C110.1058 (4)0.83037 (18)0.1270 (5)0.0663 (9)
H11A0.03570.86680.11500.099*
H11B0.16980.85540.09600.099*
H11C0.15800.81130.25800.099*
C12−0.0512 (4)0.71875 (19)0.0443 (6)0.0688 (9)
H12A0.00750.69840.17310.103*
H12B−0.09290.6769−0.04640.103*
H12C−0.12500.75010.03990.103*
N10.5853 (3)0.88073 (11)0.2989 (4)0.0414 (5)
N20.5433 (2)1.00487 (12)0.2268 (3)0.0418 (5)
H20.50241.04620.16290.050*
N30.2913 (2)0.96589 (13)−0.1477 (3)0.0468 (6)
N40.0354 (3)0.76580 (12)−0.0071 (4)0.0483 (5)
H4A−0.02020.7846−0.12800.058*
H4B0.10190.7356−0.00800.058*
O10.8070 (2)0.81390 (9)0.6329 (3)0.0522 (5)
O20.8994 (2)0.92884 (11)0.7573 (3)0.0584 (6)
O30.8499 (2)1.06669 (12)0.6792 (3)0.0583 (6)
H30.87221.02090.69900.087*
O40.6859 (3)1.13664 (11)0.4385 (4)0.0669 (6)
O50.3198 (3)1.03909 (11)−0.1066 (3)0.0666 (7)
U11U22U33U12U13U23
C10.0445 (15)0.0422 (14)0.0441 (15)0.0006 (13)0.0229 (13)0.0027 (13)
C20.0444 (15)0.0369 (13)0.0429 (15)0.0007 (13)0.0256 (13)0.0014 (13)
C30.0437 (16)0.0379 (13)0.0433 (16)−0.0040 (11)0.0249 (14)−0.0003 (11)
C40.0520 (19)0.0372 (16)0.0480 (18)−0.0081 (12)0.0248 (16)−0.0012 (12)
C50.0427 (16)0.0351 (14)0.0415 (16)−0.0004 (11)0.0227 (14)0.0032 (12)
C60.0405 (15)0.0405 (13)0.0404 (15)−0.0010 (12)0.0199 (13)0.0046 (12)
C70.0578 (19)0.0426 (14)0.0482 (18)−0.0033 (13)0.0253 (17)0.0002 (13)
C80.067 (2)0.0522 (18)0.0520 (18)−0.0110 (16)0.0279 (17)−0.0071 (15)
C90.053 (2)0.067 (2)0.0443 (18)−0.0098 (16)0.0188 (16)−0.0052 (15)
C100.0516 (19)0.065 (2)0.0466 (17)0.0030 (16)0.0167 (15)0.0110 (15)
C110.0513 (19)0.0587 (19)0.067 (2)0.0029 (15)0.0145 (17)−0.0142 (17)
C120.057 (2)0.059 (2)0.078 (2)0.0050 (15)0.0259 (19)0.0192 (17)
N10.0419 (12)0.0355 (11)0.0410 (12)−0.0004 (9)0.0170 (10)0.0029 (10)
N20.0450 (13)0.0328 (11)0.0447 (13)0.0004 (9)0.0211 (11)0.0060 (9)
N30.0454 (14)0.0442 (13)0.0453 (14)0.0005 (11)0.0194 (13)0.0065 (11)
N40.0450 (13)0.0410 (12)0.0476 (12)0.0066 (10)0.0157 (11)0.0004 (11)
O10.0579 (12)0.0383 (10)0.0505 (12)0.0056 (10)0.0208 (11)0.0057 (9)
O20.0515 (14)0.0500 (13)0.0542 (14)−0.0042 (10)0.0131 (12)0.0017 (10)
O30.0610 (14)0.0452 (12)0.0562 (13)−0.0110 (10)0.0212 (12)−0.0028 (10)
O40.0746 (16)0.0372 (10)0.0702 (15)−0.0051 (12)0.0238 (13)0.0021 (11)
O50.0696 (15)0.0361 (11)0.0670 (15)0.0016 (10)0.0157 (13)0.0075 (10)
C1—O11.243 (3)C9—C101.366 (4)
C1—O21.282 (3)C9—H90.9300
C1—C21.485 (4)C10—N31.361 (4)
C2—N11.367 (4)C10—H100.9300
C2—C31.385 (4)C11—N41.465 (4)
C3—N21.364 (3)C11—H11A0.9600
C3—C41.491 (4)C11—H11B0.9600
C4—O41.214 (3)C11—H11C0.9600
C4—O31.293 (4)C12—N41.462 (4)
C5—N11.326 (3)C12—H12A0.9600
C5—N21.355 (3)C12—H12B0.9600
C5—C61.458 (4)C12—H12C0.9600
C6—N31.377 (3)N2—H20.8600
C6—C71.380 (4)N3—O51.306 (3)
C7—C81.373 (5)N4—H4A0.9000
C7—H70.9300N4—H4B0.9000
C8—C91.380 (4)O3—H30.8200
C8—H80.9300
O1—C1—O2123.4 (3)N3—C10—H10119.1
O1—C1—C2118.8 (3)C9—C10—H10119.1
O2—C1—C2117.9 (2)N4—C11—H11A109.5
N1—C2—C3110.4 (3)N4—C11—H11B109.5
N1—C2—C1120.7 (2)H11A—C11—H11B109.5
C3—C2—C1128.9 (3)N4—C11—H11C109.5
N2—C3—C2104.8 (2)H11A—C11—H11C109.5
N2—C3—C4120.4 (2)H11B—C11—H11C109.5
C2—C3—C4134.7 (3)N4—C12—H12A109.5
O4—C4—O3123.1 (3)N4—C12—H12B109.5
O4—C4—C3120.0 (3)H12A—C12—H12B109.5
O3—C4—C3116.8 (3)N4—C12—H12C109.5
N1—C5—N2111.1 (2)H12A—C12—H12C109.5
N1—C5—C6123.3 (2)H12B—C12—H12C109.5
N2—C5—C6125.6 (2)C5—N1—C2105.44 (19)
N3—C6—C7118.8 (3)C5—N2—C3108.2 (2)
N3—C6—C5119.6 (2)C5—N2—H2125.9
C7—C6—C5121.6 (3)C3—N2—H2125.9
C8—C7—C6121.4 (3)O5—N3—C10119.2 (2)
C8—C7—H7119.3O5—N3—C6121.1 (2)
C6—C7—H7119.3C10—N3—C6119.7 (2)
C7—C8—C9119.1 (3)C12—N4—C11113.1 (3)
C7—C8—H8120.4C12—N4—H4A109.0
C9—C8—H8120.4C11—N4—H4A109.0
C10—C9—C8119.2 (3)C12—N4—H4B109.0
C10—C9—H9120.4C11—N4—H4B109.0
C8—C9—H9120.4H4A—N4—H4B107.8
N3—C10—C9121.9 (3)C4—O3—H3109.5
O1—C1—C2—N1−1.3 (4)C6—C7—C8—C90.3 (4)
O2—C1—C2—N1178.4 (2)C7—C8—C9—C100.7 (5)
O1—C1—C2—C3179.8 (3)C8—C9—C10—N3−0.6 (5)
O2—C1—C2—C3−0.6 (4)N2—C5—N1—C2−0.6 (3)
N1—C2—C3—N2−0.3 (3)C6—C5—N1—C2178.4 (2)
C1—C2—C3—N2178.8 (2)C3—C2—N1—C50.6 (3)
N1—C2—C3—C4179.4 (3)C1—C2—N1—C5−178.6 (2)
C1—C2—C3—C4−1.5 (5)N1—C5—N2—C30.5 (3)
N2—C3—C4—O41.6 (4)C6—C5—N2—C3−178.6 (2)
C2—C3—C4—O4−178.0 (3)C2—C3—N2—C5−0.1 (2)
N2—C3—C4—O3−178.4 (2)C4—C3—N2—C5−179.8 (2)
C2—C3—C4—O32.0 (4)C9—C10—N3—O5178.8 (3)
N1—C5—C6—N3177.7 (2)C9—C10—N3—C6−0.4 (4)
N2—C5—C6—N3−3.4 (4)C7—C6—N3—O5−177.8 (2)
N1—C5—C6—C7−2.2 (4)C5—C6—N3—O52.3 (3)
N2—C5—C6—C7176.7 (3)C7—C6—N3—C101.4 (4)
N3—C6—C7—C8−1.4 (4)C5—C6—N3—C10−178.5 (2)
C5—C6—C7—C8178.5 (3)
D—H···AD—HH···AD···AD—H···A
N4—H4B···N1i0.902.493.166 (3)132
N4—H4B···O1i0.902.112.933 (3)151
N4—H4A···O1ii0.901.952.806 (3)159
O3—H3···O20.821.642.455 (3)170
N2—H2···O50.862.062.603 (3)120
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N4—H4B⋯N1i 0.902.493.166 (3)132
N4—H4B⋯O1i 0.902.112.933 (3)151
N4—H4A⋯O1ii 0.901.952.806 (3)159
O3—H3⋯O20.821.642.455 (3)170
N2—H2⋯O50.862.062.603 (3)120

Symmetry codes: (i) ; (ii) .

  3 in total

1.  Porous lanthanide-organic open frameworks with helical tubes constructed from interweaving triple-helical and double-helical chains.

Authors:  Yan-Qiong Sun; Jie Zhang; Yong-Mei Chen; Guo-Yu Yang
Journal:  Angew Chem Int Ed Engl       Date:  2005-09-12       Impact factor: 15.336

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  trans-Diaqua-bis[5-carb-oxy-2-(3-pyridyl)-1H-imidazole-4-carboxyl-ato-κN,O]manganese(II).

Authors:  Li-Zhuang Chen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-09-20
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.