| Literature DB >> 21200899 |
Qing-Hua Jiang1, Ying-Hong Xu, Ling-Yan Jian, Li-Mei Zhao.
Abstract
The title potential anti-bacterial compound, C(14)H(12)N(2)O(4)·H(2)O, is a Schiff base which has an intra-molecular O-H⋯N hydrogen bond and crystallizes with one uncoordinated water mol-ecule, which links three symmetry-related mol-ecules through two O-H⋯O and one N-H⋯O hydrogen bond. In the crystal structure, further inter-molecular O-H⋯O hydrogen bonds link symmetry-related mol-ecules, forming layers parallel to the bc plane.Entities:
Year: 2007 PMID: 21200899 PMCID: PMC2915379 DOI: 10.1107/S1600536807067177
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C14H12N2O4·H2O | |
| Monoclinic, | Mo |
| Hall symbol: P 2ybc | Cell parameters from 2799 reflections |
| θ = 2.2–24.5º | |
| µ = 0.11 mm−1 | |
| β = 100.52 (3)º | Block, yellow |
| 0.33 × 0.32 × 0.32 mm | |
| Bruker SMART APEX area-detector diffractometer | 2918 independent reflections |
| Radiation source: fine-focus sealed tube | 2062 reflections with |
| Monochromator: graphite | |
| θmax = 27.0º | |
| ω scans | θmin = 2.2º |
| Absorption correction: multi-scan(SADABS; Sheldrick, 1996) | |
| 17195 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| | |
| (Δ/σ)max < 0.001 | |
| 2918 reflections | Δρmax = 0.56 e Å−3 |
| 202 parameters | Δρmin = −0.21 e Å−3 |
| 4 restraints | Extinction correction: none |
| Primary atom site location: structure-invariant direct methods |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 0.82125 (17) | 0.06536 (10) | 0.52477 (11) | 0.0340 (3) | |
| N2 | 0.89934 (18) | 0.14758 (10) | 0.48954 (11) | 0.0329 (3) | |
| O1 | 0.7166 (2) | −0.03870 (11) | 0.66833 (10) | 0.0593 (4) | |
| H1 | 0.7590 | 0.0093 | 0.6430 | 0.089* | |
| O2 | 0.96488 (18) | 0.20688 (9) | 0.65336 (9) | 0.0452 (3) | |
| O3 | 1.1037 (3) | 0.43849 (11) | 0.28345 (10) | 0.0700 (5) | |
| H3 | 1.0537 | 0.3942 | 0.2462 | 0.105* | |
| O4 | 1.3445 (2) | 0.50690 (11) | 0.63155 (11) | 0.0577 (4) | |
| H4 | 1.3389 | 0.4896 | 0.6910 | 0.087* | |
| O5 | 0.8486 (2) | 0.36158 (10) | 0.76830 (11) | 0.0606 (4) | |
| C1 | 0.6575 (2) | −0.08377 (12) | 0.48772 (14) | 0.0369 (4) | |
| C2 | 0.5775 (2) | −0.15150 (14) | 0.41236 (17) | 0.0508 (5) | |
| H2 | 0.5807 | −0.1397 | 0.3427 | 0.061* | |
| C3 | 0.4943 (3) | −0.23513 (15) | 0.4397 (2) | 0.0613 (6) | |
| H3A | 0.4418 | −0.2794 | 0.3887 | 0.074* | |
| C4 | 0.4886 (3) | −0.25336 (15) | 0.5423 (2) | 0.0635 (7) | |
| H4A | 0.4340 | −0.3106 | 0.5607 | 0.076* | |
| C5 | 0.5630 (3) | −0.18744 (16) | 0.61818 (19) | 0.0579 (6) | |
| H5 | 0.5571 | −0.1997 | 0.6874 | 0.070* | |
| C6 | 0.6470 (2) | −0.10272 (13) | 0.59157 (15) | 0.0424 (4) | |
| C7 | 0.7438 (2) | 0.00390 (12) | 0.45641 (14) | 0.0363 (4) | |
| H7 | 0.7431 | 0.0157 | 0.3863 | 0.044* | |
| C8 | 0.9672 (2) | 0.21721 (12) | 0.55913 (12) | 0.0319 (4) | |
| C9 | 1.0484 (2) | 0.30675 (11) | 0.51996 (12) | 0.0315 (4) | |
| C10 | 1.0290 (2) | 0.33013 (13) | 0.41515 (13) | 0.0399 (4) | |
| H10 | 0.9576 | 0.2916 | 0.3656 | 0.048* | |
| C11 | 1.1174 (3) | 0.41156 (13) | 0.38544 (14) | 0.0431 (4) | |
| C12 | 1.2233 (3) | 0.46968 (13) | 0.45862 (14) | 0.0424 (4) | |
| H12 | 1.2839 | 0.5235 | 0.4378 | 0.051* | |
| C13 | 1.2382 (2) | 0.44731 (13) | 0.56219 (13) | 0.0385 (4) | |
| C14 | 1.1516 (2) | 0.36597 (12) | 0.59365 (13) | 0.0354 (4) | |
| H14 | 1.1625 | 0.3511 | 0.6640 | 0.042* | |
| H2A | 0.894 (3) | 0.1496 (18) | 0.4203 (8) | 0.080* | |
| H5A | 0.876 (3) | 0.4197 (9) | 0.7493 (18) | 0.080* | |
| H5B | 0.885 (3) | 0.3199 (13) | 0.7274 (16) | 0.080* |
| N1 | 0.0361 (7) | 0.0282 (7) | 0.0391 (8) | −0.0005 (6) | 0.0105 (6) | 0.0015 (6) |
| N2 | 0.0397 (8) | 0.0282 (7) | 0.0319 (7) | −0.0035 (6) | 0.0099 (6) | −0.0004 (6) |
| O1 | 0.0736 (10) | 0.0606 (9) | 0.0411 (8) | −0.0153 (8) | 0.0033 (7) | 0.0109 (7) |
| O2 | 0.0685 (9) | 0.0388 (7) | 0.0287 (7) | −0.0058 (6) | 0.0104 (6) | 0.0020 (5) |
| O3 | 0.1327 (15) | 0.0443 (8) | 0.0319 (7) | −0.0293 (9) | 0.0125 (8) | 0.0041 (6) |
| O4 | 0.0694 (9) | 0.0560 (9) | 0.0443 (8) | −0.0272 (7) | 0.0015 (7) | −0.0049 (7) |
| O5 | 0.1062 (13) | 0.0392 (8) | 0.0432 (8) | 0.0067 (8) | 0.0312 (8) | 0.0064 (6) |
| C1 | 0.0316 (8) | 0.0285 (8) | 0.0517 (11) | 0.0031 (7) | 0.0101 (8) | −0.0023 (7) |
| C2 | 0.0445 (10) | 0.0444 (11) | 0.0654 (13) | −0.0034 (9) | 0.0149 (9) | −0.0156 (10) |
| C3 | 0.0442 (11) | 0.0385 (11) | 0.102 (2) | −0.0061 (9) | 0.0148 (12) | −0.0205 (12) |
| C4 | 0.0443 (11) | 0.0326 (10) | 0.115 (2) | −0.0027 (9) | 0.0177 (12) | 0.0101 (12) |
| C5 | 0.0530 (12) | 0.0481 (12) | 0.0726 (15) | −0.0013 (10) | 0.0110 (11) | 0.0226 (11) |
| C6 | 0.0397 (10) | 0.0336 (9) | 0.0524 (12) | 0.0017 (7) | 0.0043 (8) | 0.0086 (8) |
| C7 | 0.0385 (9) | 0.0353 (9) | 0.0371 (10) | 0.0010 (7) | 0.0117 (7) | −0.0017 (7) |
| C8 | 0.0366 (9) | 0.0299 (8) | 0.0292 (9) | 0.0037 (7) | 0.0061 (7) | 0.0010 (7) |
| C9 | 0.0375 (9) | 0.0271 (8) | 0.0303 (9) | 0.0026 (7) | 0.0071 (7) | −0.0004 (6) |
| C10 | 0.0586 (11) | 0.0287 (8) | 0.0304 (9) | −0.0043 (8) | 0.0030 (8) | −0.0008 (7) |
| C11 | 0.0684 (12) | 0.0312 (9) | 0.0305 (9) | −0.0030 (8) | 0.0108 (8) | 0.0017 (7) |
| C12 | 0.0562 (11) | 0.0305 (9) | 0.0418 (11) | −0.0067 (8) | 0.0121 (8) | 0.0011 (8) |
| C13 | 0.0425 (10) | 0.0340 (9) | 0.0382 (10) | −0.0030 (7) | 0.0056 (8) | −0.0044 (7) |
| C14 | 0.0423 (9) | 0.0356 (9) | 0.0281 (9) | 0.0000 (7) | 0.0057 (7) | −0.0004 (7) |
| N1—C7 | 1.283 (2) | C3—C4 | 1.373 (3) |
| N1—N2 | 1.3780 (19) | C3—H3A | 0.9300 |
| N2—C8 | 1.343 (2) | C4—C5 | 1.375 (3) |
| N2—H2A | 0.899 (10) | C4—H4A | 0.9300 |
| O1—C6 | 1.357 (2) | C5—C6 | 1.386 (3) |
| O1—H1 | 0.8200 | C5—H5 | 0.9300 |
| O2—C8 | 1.244 (2) | C7—H7 | 0.9300 |
| O3—C11 | 1.368 (2) | C8—C9 | 1.490 (2) |
| O3—H3 | 0.8200 | C9—C14 | 1.386 (2) |
| O4—C13 | 1.368 (2) | C9—C10 | 1.388 (2) |
| O4—H4 | 0.8200 | C10—C11 | 1.383 (2) |
| O5—H5A | 0.856 (9) | C10—H10 | 0.9300 |
| O5—H5B | 0.857 (9) | C11—C12 | 1.383 (3) |
| C1—C6 | 1.399 (3) | C12—C13 | 1.372 (3) |
| C1—C2 | 1.400 (3) | C12—H12 | 0.9300 |
| C1—C7 | 1.450 (2) | C13—C14 | 1.383 (2) |
| C2—C3 | 1.374 (3) | C14—H14 | 0.9300 |
| C2—H2 | 0.9300 | ||
| C7—N1—N2 | 117.40 (14) | C5—C6—C1 | 120.43 (19) |
| C8—N2—N1 | 118.17 (13) | N1—C7—C1 | 120.45 (16) |
| C8—N2—H2A | 126.9 (16) | N1—C7—H7 | 119.8 |
| N1—N2—H2A | 114.8 (16) | C1—C7—H7 | 119.8 |
| C6—O1—H1 | 109.5 | O2—C8—N2 | 121.30 (15) |
| C11—O3—H3 | 109.5 | O2—C8—C9 | 120.94 (15) |
| C13—O4—H4 | 109.5 | N2—C8—C9 | 117.75 (14) |
| H5A—O5—H5B | 106.6 (18) | C14—C9—C10 | 120.16 (15) |
| C6—C1—C2 | 117.96 (17) | C14—C9—C8 | 116.75 (15) |
| C6—C1—C7 | 122.26 (16) | C10—C9—C8 | 123.06 (15) |
| C2—C1—C7 | 119.75 (17) | C11—C10—C9 | 119.09 (16) |
| C3—C2—C1 | 121.0 (2) | C11—C10—H10 | 120.5 |
| C3—C2—H2 | 119.5 | C9—C10—H10 | 120.5 |
| C1—C2—H2 | 119.5 | O3—C11—C10 | 121.91 (17) |
| C4—C3—C2 | 120.1 (2) | O3—C11—C12 | 117.19 (16) |
| C4—C3—H3A | 120.0 | C10—C11—C12 | 120.90 (17) |
| C2—C3—H3A | 120.0 | C13—C12—C11 | 119.52 (17) |
| C3—C4—C5 | 120.4 (2) | C13—C12—H12 | 120.2 |
| C3—C4—H4A | 119.8 | C11—C12—H12 | 120.2 |
| C5—C4—H4A | 119.8 | O4—C13—C12 | 117.35 (16) |
| C4—C5—C6 | 120.1 (2) | O4—C13—C14 | 122.08 (16) |
| C4—C5—H5 | 120.0 | C12—C13—C14 | 120.54 (16) |
| C6—C5—H5 | 120.0 | C13—C14—C9 | 119.75 (16) |
| O1—C6—C5 | 118.38 (18) | C13—C14—H14 | 120.1 |
| O1—C6—C1 | 121.19 (16) | C9—C14—H14 | 120.1 |
| H··· | ||||
| O1—H1···N1 | 0.82 | 1.86 | 2.587 (2) | 147 |
| O5—H5B···O2 | 0.857 (9) | 1.96 (1) | 2.807 (2) | 170 (2) |
| O5—H5A···O3i | 0.856 (9) | 1.96 (1) | 2.806 (2) | 168 (2) |
| N2—H2A···O5ii | 0.899 (10) | 1.96 (1) | 2.852 (2) | 170 (2) |
| O3—H3···O2ii | 0.82 | 1.87 | 2.682 (2) | 173 |
| O4—H4···O1iii | 0.82 | 2.00 | 2.813 (2) | 169 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1⋯N1 | 0.82 | 1.86 | 2.587 (2) | 147 |
| O5—H5 | 0.857 (9) | 1.96 (1) | 2.807 (2) | 170 (2) |
| O5—H5 | 0.856 (9) | 1.96 (1) | 2.806 (2) | 168 (2) |
| N2—H2 | 0.899 (10) | 1.96 (1) | 2.852 (2) | 170 (2) |
| O3—H3⋯O2ii | 0.82 | 1.87 | 2.682 (2) | 173 |
| O4—H4⋯O1iii | 0.82 | 2.00 | 2.813 (2) | 169 |
Symmetry codes: (i) ; (ii) ; (iii) .