Literature DB >> 21200899

3,5-Dihydr-oxy-N'-(2-hydroxy-benzyl-idene)benzohydrazide monohydrate.

Qing-Hua Jiang1, Ying-Hong Xu, Ling-Yan Jian, Li-Mei Zhao.   

Abstract

The title potential anti-bacterial compound, C(14)H(12)N(2)O(4)·H(2)O, is a Schiff base which has an intra-molecular O-H⋯N hydrogen bond and crystallizes with one uncoordinated water mol-ecule, which links three symmetry-related mol-ecules through two O-H⋯O and one N-H⋯O hydrogen bond. In the crystal structure, further inter-molecular O-H⋯O hydrogen bonds link symmetry-related mol-ecules, forming layers parallel to the bc plane.

Entities:  

Year:  2007        PMID: 21200899      PMCID: PMC2915379          DOI: 10.1107/S1600536807067177

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Ali et al. (2005 ▶); Diao (2007 ▶); Diao, Li et al. (2007 ▶); Diao, Shu et al. (2007 ▶); Diao, Wang et al. (2007 ▶); Jing et al. (2006 ▶); Qiu et al. (2006 ▶); Wang et al. (2007 ▶); Yang (2007 ▶).

Experimental

Crystal data

C14H12N2O4·H2O M = 290.27 Monoclinic, a = 7.773 (2) Å b = 13.411 (3) Å c = 13.084 (3) Å β = 100.52 (3)° V = 1341.0 (5) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 293 (2) K 0.33 × 0.32 × 0.32 mm

Data collection

Bruker SMART APEX area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.964, T max = 0.965 17195 measured reflections 2918 independent reflections 2062 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.125 S = 1.03 2918 reflections 202 parameters 4 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.56 e Å−3 Δρmin = −0.21 e Å−3 Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1996 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997a ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997a ▶); molecular graphics: SHELXTL (Sheldrick, 1997b ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536807067177/su2036sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807067177/su2036Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H12N2O4·H2OF000 = 608
Mr = 290.27Dx = 1.438 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: P 2ybcCell parameters from 2799 reflections
a = 7.773 (2) Åθ = 2.2–24.5º
b = 13.411 (3) ŵ = 0.11 mm1
c = 13.084 (3) ÅT = 293 (2) K
β = 100.52 (3)ºBlock, yellow
V = 1341.0 (5) Å30.33 × 0.32 × 0.32 mm
Z = 4
Bruker SMART APEX area-detector diffractometer2918 independent reflections
Radiation source: fine-focus sealed tube2062 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.038
T = 293(2) Kθmax = 27.0º
ω scansθmin = 2.2º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996)h = −9→9
Tmin = 0.964, Tmax = 0.965k = −16→17
17195 measured reflectionsl = −16→16
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.045H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.125  w = 1/[σ2(Fo2) + (0.0542P)2 + 0.4645P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
2918 reflectionsΔρmax = 0.56 e Å3
202 parametersΔρmin = −0.21 e Å3
4 restraintsExtinction correction: none
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.82125 (17)0.06536 (10)0.52477 (11)0.0340 (3)
N20.89934 (18)0.14758 (10)0.48954 (11)0.0329 (3)
O10.7166 (2)−0.03870 (11)0.66833 (10)0.0593 (4)
H10.75900.00930.64300.089*
O20.96488 (18)0.20688 (9)0.65336 (9)0.0452 (3)
O31.1037 (3)0.43849 (11)0.28345 (10)0.0700 (5)
H31.05370.39420.24620.105*
O41.3445 (2)0.50690 (11)0.63155 (11)0.0577 (4)
H41.33890.48960.69100.087*
O50.8486 (2)0.36158 (10)0.76830 (11)0.0606 (4)
C10.6575 (2)−0.08377 (12)0.48772 (14)0.0369 (4)
C20.5775 (2)−0.15150 (14)0.41236 (17)0.0508 (5)
H20.5807−0.13970.34270.061*
C30.4943 (3)−0.23513 (15)0.4397 (2)0.0613 (6)
H3A0.4418−0.27940.38870.074*
C40.4886 (3)−0.25336 (15)0.5423 (2)0.0635 (7)
H4A0.4340−0.31060.56070.076*
C50.5630 (3)−0.18744 (16)0.61818 (19)0.0579 (6)
H50.5571−0.19970.68740.070*
C60.6470 (2)−0.10272 (13)0.59157 (15)0.0424 (4)
C70.7438 (2)0.00390 (12)0.45641 (14)0.0363 (4)
H70.74310.01570.38630.044*
C80.9672 (2)0.21721 (12)0.55913 (12)0.0319 (4)
C91.0484 (2)0.30675 (11)0.51996 (12)0.0315 (4)
C101.0290 (2)0.33013 (13)0.41515 (13)0.0399 (4)
H100.95760.29160.36560.048*
C111.1174 (3)0.41156 (13)0.38544 (14)0.0431 (4)
C121.2233 (3)0.46968 (13)0.45862 (14)0.0424 (4)
H121.28390.52350.43780.051*
C131.2382 (2)0.44731 (13)0.56219 (13)0.0385 (4)
C141.1516 (2)0.36597 (12)0.59365 (13)0.0354 (4)
H141.16250.35110.66400.042*
H2A0.894 (3)0.1496 (18)0.4203 (8)0.080*
H5A0.876 (3)0.4197 (9)0.7493 (18)0.080*
H5B0.885 (3)0.3199 (13)0.7274 (16)0.080*
U11U22U33U12U13U23
N10.0361 (7)0.0282 (7)0.0391 (8)−0.0005 (6)0.0105 (6)0.0015 (6)
N20.0397 (8)0.0282 (7)0.0319 (7)−0.0035 (6)0.0099 (6)−0.0004 (6)
O10.0736 (10)0.0606 (9)0.0411 (8)−0.0153 (8)0.0033 (7)0.0109 (7)
O20.0685 (9)0.0388 (7)0.0287 (7)−0.0058 (6)0.0104 (6)0.0020 (5)
O30.1327 (15)0.0443 (8)0.0319 (7)−0.0293 (9)0.0125 (8)0.0041 (6)
O40.0694 (9)0.0560 (9)0.0443 (8)−0.0272 (7)0.0015 (7)−0.0049 (7)
O50.1062 (13)0.0392 (8)0.0432 (8)0.0067 (8)0.0312 (8)0.0064 (6)
C10.0316 (8)0.0285 (8)0.0517 (11)0.0031 (7)0.0101 (8)−0.0023 (7)
C20.0445 (10)0.0444 (11)0.0654 (13)−0.0034 (9)0.0149 (9)−0.0156 (10)
C30.0442 (11)0.0385 (11)0.102 (2)−0.0061 (9)0.0148 (12)−0.0205 (12)
C40.0443 (11)0.0326 (10)0.115 (2)−0.0027 (9)0.0177 (12)0.0101 (12)
C50.0530 (12)0.0481 (12)0.0726 (15)−0.0013 (10)0.0110 (11)0.0226 (11)
C60.0397 (10)0.0336 (9)0.0524 (12)0.0017 (7)0.0043 (8)0.0086 (8)
C70.0385 (9)0.0353 (9)0.0371 (10)0.0010 (7)0.0117 (7)−0.0017 (7)
C80.0366 (9)0.0299 (8)0.0292 (9)0.0037 (7)0.0061 (7)0.0010 (7)
C90.0375 (9)0.0271 (8)0.0303 (9)0.0026 (7)0.0071 (7)−0.0004 (6)
C100.0586 (11)0.0287 (8)0.0304 (9)−0.0043 (8)0.0030 (8)−0.0008 (7)
C110.0684 (12)0.0312 (9)0.0305 (9)−0.0030 (8)0.0108 (8)0.0017 (7)
C120.0562 (11)0.0305 (9)0.0418 (11)−0.0067 (8)0.0121 (8)0.0011 (8)
C130.0425 (10)0.0340 (9)0.0382 (10)−0.0030 (7)0.0056 (8)−0.0044 (7)
C140.0423 (9)0.0356 (9)0.0281 (9)0.0000 (7)0.0057 (7)−0.0004 (7)
N1—C71.283 (2)C3—C41.373 (3)
N1—N21.3780 (19)C3—H3A0.9300
N2—C81.343 (2)C4—C51.375 (3)
N2—H2A0.899 (10)C4—H4A0.9300
O1—C61.357 (2)C5—C61.386 (3)
O1—H10.8200C5—H50.9300
O2—C81.244 (2)C7—H70.9300
O3—C111.368 (2)C8—C91.490 (2)
O3—H30.8200C9—C141.386 (2)
O4—C131.368 (2)C9—C101.388 (2)
O4—H40.8200C10—C111.383 (2)
O5—H5A0.856 (9)C10—H100.9300
O5—H5B0.857 (9)C11—C121.383 (3)
C1—C61.399 (3)C12—C131.372 (3)
C1—C21.400 (3)C12—H120.9300
C1—C71.450 (2)C13—C141.383 (2)
C2—C31.374 (3)C14—H140.9300
C2—H20.9300
C7—N1—N2117.40 (14)C5—C6—C1120.43 (19)
C8—N2—N1118.17 (13)N1—C7—C1120.45 (16)
C8—N2—H2A126.9 (16)N1—C7—H7119.8
N1—N2—H2A114.8 (16)C1—C7—H7119.8
C6—O1—H1109.5O2—C8—N2121.30 (15)
C11—O3—H3109.5O2—C8—C9120.94 (15)
C13—O4—H4109.5N2—C8—C9117.75 (14)
H5A—O5—H5B106.6 (18)C14—C9—C10120.16 (15)
C6—C1—C2117.96 (17)C14—C9—C8116.75 (15)
C6—C1—C7122.26 (16)C10—C9—C8123.06 (15)
C2—C1—C7119.75 (17)C11—C10—C9119.09 (16)
C3—C2—C1121.0 (2)C11—C10—H10120.5
C3—C2—H2119.5C9—C10—H10120.5
C1—C2—H2119.5O3—C11—C10121.91 (17)
C4—C3—C2120.1 (2)O3—C11—C12117.19 (16)
C4—C3—H3A120.0C10—C11—C12120.90 (17)
C2—C3—H3A120.0C13—C12—C11119.52 (17)
C3—C4—C5120.4 (2)C13—C12—H12120.2
C3—C4—H4A119.8C11—C12—H12120.2
C5—C4—H4A119.8O4—C13—C12117.35 (16)
C4—C5—C6120.1 (2)O4—C13—C14122.08 (16)
C4—C5—H5120.0C12—C13—C14120.54 (16)
C6—C5—H5120.0C13—C14—C9119.75 (16)
O1—C6—C5118.38 (18)C13—C14—H14120.1
O1—C6—C1121.19 (16)C9—C14—H14120.1
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.821.862.587 (2)147
O5—H5B···O20.857 (9)1.96 (1)2.807 (2)170 (2)
O5—H5A···O3i0.856 (9)1.96 (1)2.806 (2)168 (2)
N2—H2A···O5ii0.899 (10)1.96 (1)2.852 (2)170 (2)
O3—H3···O2ii0.821.872.682 (2)173
O4—H4···O1iii0.822.002.813 (2)169
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯N10.821.862.587 (2)147
O5—H5B⋯O20.857 (9)1.96 (1)2.807 (2)170 (2)
O5—H5A⋯O3i0.856 (9)1.96 (1)2.806 (2)168 (2)
N2—H2A⋯O5ii0.899 (10)1.96 (1)2.852 (2)170 (2)
O3—H3⋯O2ii0.821.872.682 (2)173
O4—H4⋯O1iii0.822.002.813 (2)169

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  (E)-N'-(5-Chloro-2-hydroxy-benzyl-idene)-3,5-dihydroxy-benzohydrazide mono-hydrate.

Authors:  Sa Deng; Ling Han; Shan-Shan Huang; Hou-Li Zhang; Yun-Peng Diao; Ke-Xin Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-11

2.  (E)-N'-(2-Chloro-benzyl-idene)-3,5-di-hydroxy-benzohydrazide dihydrate.

Authors:  Ling Yuan; Yi Nan; Jing-Yuan Li; Xiu-Lan Huang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-22
  2 in total

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