Literature DB >> 21200893

1,6-Dihydr-oxy-3-hydroxy-methyl-8-methoxy-anthracene-9,10-dione monohydrate.

Wen-Liang Wang1, Wei Sun, Qian-Qun Gu, Wei-Ming Zhu.   

Abstract

The title compound, C(16)H(12)O(6)·H(2)O, isolated from the halotolerant fungus Aspergillus variecolor B-17, is also known as questinol monohydrate. In the crystal structure, O-H⋯O hydrogen bonds link the mol-ecules, forming a three-dimensional network. π-π stacking inter-actions consolidate the supra-molecular structure [the shortest inter-planar distances are 3.456 (3), 3.366 (4) and 3.382 (4) Å].

Entities:  

Year:  2007        PMID: 21200893      PMCID: PMC2915373          DOI: 10.1107/S1600536807066986

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Stickings & Mahmoodian (1962 ▶); Slater et al. (1971 ▶); Kimura et al. (1983 ▶); Arai et al. (1989 ▶); Nielsen et al. (2004 ▶); Wang et al. (2007 ▶).

Experimental

Crystal data

C16H12O6·H2O M = 318.27 Monoclinic, a = 11.3317 (11) Å b = 16.7515 (19) Å c = 7.2193 (9) Å β = 95.453 (2)° V = 1364.2 (3) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 298 (2) K 0.18 × 0.14 × 0.05 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2003 ▶) T min = 0.978, T max = 0.994 7003 measured reflections 2404 independent reflections 1108 reflections with I > 2σ(I) R int = 0.090

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.099 S = 1.01 2404 reflections 208 parameters H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.24 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: XP (Siemens, 1994 ▶) and CAMERON (Watkin et al., 1993 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536807066986/bq2051sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807066986/bq2051Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H12O6·H2OF000 = 664
Mr = 318.27Dx = 1.550 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P2ybcCell parameters from 901 reflections
a = 11.3317 (11) Åθ = 2.2–25.2º
b = 16.7515 (19) ŵ = 0.12 mm1
c = 7.2193 (9) ÅT = 298 (2) K
β = 95.453 (2)ºFlake, yellow
V = 1364.2 (3) Å30.18 × 0.14 × 0.05 mm
Z = 4
Bruker SMART CCD area-detector diffractometer2404 independent reflections
Radiation source: fine-focus sealed tube1108 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.090
T = 298(2) Kθmax = 25.0º
φ and ω scansθmin = 1.8º
Absorption correction: multi-scan(SADABS; Sheldrick, 2003)h = −13→10
Tmin = 0.978, Tmax = 0.994k = −19→19
7003 measured reflectionsl = −8→7
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.055H-atom parameters constrained
wR(F2) = 0.099  w = 1/[σ2(Fo2) + (0.0163P)2] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max < 0.001
2404 reflectionsΔρmax = 0.23 e Å3
208 parametersΔρmin = −0.24 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.47014 (19)0.62825 (13)0.9624 (3)0.0409 (7)
H10.49270.58280.94230.061*
O20.4486 (2)0.91888 (13)0.8924 (3)0.0452 (7)
H20.42150.93370.78870.068*
O30.9454 (2)0.74461 (14)0.7759 (4)0.0548 (8)
O41.1510 (2)0.48495 (14)0.6863 (3)0.0489 (7)
H41.18980.52460.66440.073*
O50.77278 (19)0.40952 (13)0.8557 (3)0.0446 (7)
O60.6237 (2)0.52178 (13)0.9245 (3)0.0419 (7)
O70.2909 (2)0.61113 (14)0.6547 (3)0.0609 (8)
H7A0.34230.61450.74810.073*
H7B0.32790.60160.56010.073*
C10.5559 (3)0.6817 (2)0.9249 (4)0.0302 (9)
C20.5248 (3)0.76155 (18)0.9251 (4)0.0316 (9)
H2A0.44860.77630.94850.038*
C30.6068 (3)0.8194 (2)0.8904 (4)0.0303 (9)
C40.7203 (3)0.79692 (18)0.8534 (4)0.0314 (9)
H4A0.77570.83580.83080.038*
C50.7514 (3)0.7171 (2)0.8500 (4)0.0290 (8)
C60.8705 (3)0.6940 (2)0.8020 (4)0.0334 (9)
C70.9000 (3)0.60779 (19)0.7896 (4)0.0294 (9)
C81.0101 (3)0.5876 (2)0.7384 (4)0.0363 (9)
H81.06260.62740.70940.044*
C91.0428 (3)0.5076 (2)0.7301 (4)0.0351 (9)
C100.9635 (3)0.4471 (2)0.7656 (4)0.0366 (10)
H100.98510.39390.75490.044*
C110.8527 (3)0.4668 (2)0.8167 (4)0.0334 (9)
C120.8161 (3)0.54798 (19)0.8292 (4)0.0285 (8)
C130.7004 (3)0.5714 (2)0.8841 (4)0.0304 (9)
C140.6699 (3)0.65733 (19)0.8854 (4)0.0278 (8)
C150.5733 (3)0.90622 (19)0.8933 (4)0.0393 (9)
H15A0.61320.93091.00360.047*
H15B0.60100.93240.78560.047*
C160.8055 (3)0.3271 (2)0.8389 (5)0.0564 (12)
H16A0.82250.31650.71350.085*
H16B0.74130.29360.86940.085*
H16C0.87460.31600.92260.085*
U11U22U33U12U13U23
O10.0374 (16)0.0249 (15)0.0619 (17)−0.0027 (12)0.0123 (13)−0.0018 (12)
O20.0414 (16)0.0392 (16)0.0558 (17)0.0107 (13)0.0084 (13)0.0035 (12)
O30.0387 (17)0.0291 (16)0.100 (2)−0.0081 (13)0.0226 (15)0.0001 (14)
O40.0384 (16)0.0398 (17)0.0711 (19)0.0066 (13)0.0182 (14)0.0000 (13)
O50.0337 (15)0.0244 (15)0.0771 (19)0.0011 (13)0.0122 (14)−0.0005 (14)
O60.0333 (15)0.0244 (15)0.0702 (18)−0.0049 (12)0.0167 (13)0.0007 (12)
O70.0491 (18)0.073 (2)0.0616 (18)−0.0052 (15)0.0096 (14)−0.0054 (15)
C10.029 (2)0.029 (2)0.032 (2)−0.0075 (18)0.0036 (18)−0.0010 (16)
C20.033 (2)0.025 (2)0.038 (2)0.0050 (18)0.0069 (18)0.0032 (16)
C30.039 (2)0.022 (2)0.030 (2)0.0024 (19)0.0027 (18)−0.0010 (15)
C40.033 (2)0.023 (2)0.039 (2)−0.0027 (18)0.0053 (17)0.0039 (17)
C50.028 (2)0.030 (2)0.030 (2)−0.0011 (18)0.0053 (17)0.0013 (16)
C60.033 (2)0.027 (2)0.041 (2)−0.0038 (19)0.0032 (18)−0.0011 (17)
C70.029 (2)0.028 (2)0.032 (2)−0.0014 (18)0.0073 (17)0.0002 (16)
C80.036 (2)0.032 (2)0.043 (2)−0.001 (2)0.0117 (18)0.0018 (18)
C90.028 (2)0.042 (3)0.036 (2)0.009 (2)0.0072 (18)−0.0001 (18)
C100.034 (2)0.031 (2)0.045 (2)0.0034 (18)0.0025 (19)−0.0053 (17)
C110.028 (2)0.031 (2)0.040 (2)−0.0017 (19)0.0008 (18)−0.0001 (17)
C120.024 (2)0.027 (2)0.035 (2)0.0004 (18)0.0047 (17)−0.0012 (16)
C130.029 (2)0.034 (2)0.028 (2)−0.0038 (19)−0.0002 (17)−0.0044 (17)
C140.030 (2)0.026 (2)0.027 (2)0.0021 (17)0.0045 (17)−0.0017 (15)
C150.042 (2)0.035 (2)0.041 (2)0.002 (2)0.0071 (19)−0.0018 (18)
C160.061 (3)0.020 (2)0.089 (3)0.003 (2)0.013 (2)0.002 (2)
O1—C11.368 (3)C4—H4A0.9300
O1—H10.8200C5—C141.403 (4)
O2—C151.428 (3)C5—C61.476 (4)
O2—H20.8200C6—C71.486 (4)
O3—C61.227 (3)C7—C81.376 (4)
O4—C91.349 (3)C7—C121.428 (4)
O4—H40.8200C8—C91.394 (4)
O5—C111.367 (4)C8—H80.9300
O5—C161.439 (4)C9—C101.394 (4)
O6—C131.256 (3)C10—C111.382 (4)
O7—H7A0.8500C10—H100.9300
O7—H7B0.8500C11—C121.428 (4)
C1—C21.382 (4)C12—C131.460 (4)
C1—C141.409 (4)C13—C141.481 (4)
C2—C31.381 (4)C15—H15A0.9700
C2—H2A0.9300C15—H15B0.9700
C3—C41.390 (4)C16—H16A0.9600
C3—C151.504 (4)C16—H16B0.9600
C4—C51.383 (4)C16—H16C0.9600
C1—O1—H1109.5O4—C9—C10117.0 (3)
C15—O2—H2109.5C8—C9—C10120.9 (3)
C9—O4—H4109.5C11—C10—C9119.6 (3)
C11—O5—C16118.3 (3)C11—C10—H10120.2
H7A—O7—H7B107.3C9—C10—H10120.2
O1—C1—C2116.6 (3)O5—C11—C10121.7 (3)
O1—C1—C14122.1 (3)O5—C11—C12116.9 (3)
C2—C1—C14121.3 (3)C10—C11—C12121.4 (3)
C3—C2—C1120.1 (3)C11—C12—C7116.9 (3)
C3—C2—H2A119.9C11—C12—C13123.2 (3)
C1—C2—H2A119.9C7—C12—C13119.9 (3)
C2—C3—C4119.7 (3)O6—C13—C12123.0 (3)
C2—C3—C15120.0 (3)O6—C13—C14118.3 (3)
C4—C3—C15120.3 (3)C12—C13—C14118.6 (3)
C5—C4—C3120.5 (3)C5—C14—C1117.5 (3)
C5—C4—H4A119.8C5—C14—C13122.3 (3)
C3—C4—H4A119.8C1—C14—C13120.2 (3)
C4—C5—C14120.9 (3)O2—C15—C3113.2 (3)
C4—C5—C6119.9 (3)O2—C15—H15A108.9
C14—C5—C6119.2 (3)C3—C15—H15A108.9
O3—C6—C5121.0 (3)O2—C15—H15B108.9
O3—C6—C7120.0 (3)C3—C15—H15B108.9
C5—C6—C7119.0 (3)H15A—C15—H15B107.7
C8—C7—C12121.3 (3)O5—C16—H16A109.5
C8—C7—C6118.0 (3)O5—C16—H16B109.5
C12—C7—C6120.8 (3)H16A—C16—H16B109.5
C7—C8—C9119.9 (3)O5—C16—H16C109.5
C7—C8—H8120.0H16A—C16—H16C109.5
C9—C8—H8120.0H16B—C16—H16C109.5
O4—C9—C8122.1 (3)
O1—C1—C2—C3179.3 (3)O5—C11—C12—C7179.6 (3)
C14—C1—C2—C3−1.6 (5)C10—C11—C12—C7−1.0 (5)
C1—C2—C3—C40.7 (5)O5—C11—C12—C131.2 (5)
C1—C2—C3—C15−179.2 (3)C10—C11—C12—C13−179.5 (3)
C2—C3—C4—C50.4 (5)C8—C7—C12—C111.2 (5)
C15—C3—C4—C5−179.8 (3)C6—C7—C12—C11−179.0 (3)
C3—C4—C5—C14−0.6 (5)C8—C7—C12—C13179.7 (3)
C3—C4—C5—C6177.2 (3)C6—C7—C12—C13−0.5 (4)
C4—C5—C6—O34.5 (5)C11—C12—C13—O6−0.1 (5)
C14—C5—C6—O3−177.7 (3)C7—C12—C13—O6−178.4 (3)
C4—C5—C6—C7−176.9 (3)C11—C12—C13—C14−177.7 (3)
C14—C5—C6—C71.0 (4)C7—C12—C13—C143.9 (4)
O3—C6—C7—C8−3.5 (5)C4—C5—C14—C1−0.2 (5)
C5—C6—C7—C8177.8 (3)C6—C5—C14—C1−178.0 (3)
O3—C6—C7—C12176.7 (3)C4—C5—C14—C13−179.6 (3)
C5—C6—C7—C12−2.0 (4)C6—C5—C14—C132.6 (4)
C12—C7—C8—C9−2.0 (5)O1—C1—C14—C5−179.6 (3)
C6—C7—C8—C9178.2 (3)C2—C1—C14—C51.3 (5)
C7—C8—C9—O4−177.9 (3)O1—C1—C14—C13−0.2 (4)
C7—C8—C9—C102.7 (5)C2—C1—C14—C13−179.3 (3)
O4—C9—C10—C11178.0 (3)O6—C13—C14—C5177.2 (3)
C8—C9—C10—C11−2.5 (5)C12—C13—C14—C5−5.1 (4)
C16—O5—C11—C10−1.2 (4)O6—C13—C14—C1−2.2 (4)
C16—O5—C11—C12178.1 (3)C12—C13—C14—C1175.5 (3)
C9—C10—C11—O5−178.9 (3)C2—C3—C15—O2−13.1 (4)
C9—C10—C11—C121.7 (5)C4—C3—C15—O2167.1 (3)
D—H···AD—HH···AD···AD—H···A
O1—H1···O60.821.822.525 (3)144
O2—H2···O5i0.822.382.945 (3)127
O2—H2···O6i0.822.162.919 (3)154
O4—H4···O7ii0.821.852.665 (3)170
O7—H7A···O10.852.032.878 (3)176
O7—H7B···O2iii0.851.942.771 (3)165
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯O60.821.822.525 (3)144
O2—H2⋯O5i0.822.382.945 (3)127
O2—H2⋯O6i0.822.162.919 (3)154
O4—H4⋯O7ii0.821.852.665 (3)170
O7—H7A⋯O10.852.032.878 (3)176
O7—H7B⋯O2iii0.851.942.771 (3)165

Symmetry codes: (i) ; (ii) ; (iii) .

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