Literature DB >> 21200868

Nicotinohydrazide.

Gustavo Portalone1, Marcello Colapietro.   

Abstract

IN THE TITLE COMPOUND (ALTERNATIVE NAME: pyridine-3-carbo-hydrazide, C(6)H(7)N(3)O), the asymmetric unit contains a single mol-ecule. In contrast with nicotinic acid and nicotinamide, the C=O bond is found to be oriented cis with respect to the C(ipso) C N fragment in the pyridine ring. The pyridine ring and the hydrazide group make a dihedral angle of 34.0 (2)°. In the crystal structure, mol-ecules are associated into a three-dimensional framework by a combination of N-H⋯N and three-centre N-H⋯O hydrogen bonds.

Entities:  

Year:  2007        PMID: 21200868      PMCID: PMC2915352          DOI: 10.1107/S1600536807066561

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The structure of the same compound has been determined independently and is reported in the preceding paper (Priebe et al., 2008 ▶). For related literature, see: Bhat et al. (1974 ▶); Kutoglu & Scheringer (1983 ▶); Miwa et al. (1999 ▶); Portalone (2007 ▶); Portalone & Colapietro (2007 ▶). For computation of ring patterns formed by hydrogen bonds in crystal structures, see: Etter et al. (1990 ▶); Bernstein et al. (1995 ▶); Motherwell et al. (1999 ▶).

Experimental

Crystal data

C6H7N3O M = 137.15 Orthorhombic, a = 3.8727 (10) Å b = 10.481 (2) Å c = 15.855 (2) Å V = 643.6 (2) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 298 (2) K 0.15 × 0.05 × 0.05 mm

Data collection

Oxford Diffraction Xcalibur S CCD diffractometer Absorption correction: none 3076 measured reflections 1139 independent reflections 695 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.131 S = 1.19 1139 reflections 93 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.22 e Å−3 Δρmin = −0.22 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2006 ▶); cell refinement: CrysAlis CCD; data reduction: CrysAlis RED (Oxford Diffraction, 2006 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536807066561/bh2149sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807066561/bh2149Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H7N3OF000 = 288
Mr = 137.15Dx = 1.415 Mg m3
Orthorhombic, P212121Mo Kα radiation λ = 0.71069 Å
Hall symbol: P 2ac 2abCell parameters from 6060 reflections
a = 3.8727 (10) Åθ = 2.3–30.0º
b = 10.481 (2) ŵ = 0.10 mm1
c = 15.855 (2) ÅT = 298 (2) K
V = 643.6 (2) Å3Plate, colourless
Z = 40.15 × 0.05 × 0.05 mm
Oxford Diffraction Xcalibur S CCD diffractometer1139 independent reflections
Radiation source: Enhance (Mo) X-ray source695 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.019
Detector resolution: 16.0696 pixels mm-1θmax = 30.0º
T = 298(2) Kθmin = 2.3º
ω and φ scansh = −5→5
Absorption correction: nonek = −14→14
3076 measured reflectionsl = −22→22
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.042H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.131  w = 1/[σ2(Fo2) + (0.022P)2 + 0.3733P] where P = (Fo2 + 2Fc2)/3
S = 1.19(Δ/σ)max < 0.001
1139 reflectionsΔρmax = 0.22 e Å3
93 parametersΔρmin = −0.22 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
xyzUiso*/Ueq
O11.0228 (9)0.1920 (2)0.10123 (15)0.0690 (8)
N10.4952 (10)0.1249 (3)0.32513 (17)0.0622 (8)
N20.8838 (10)0.4009 (3)0.10818 (16)0.0613 (9)
H210.777 (5)0.464 (3)0.1359 (12)0.074*
N30.9984 (11)0.4321 (3)0.02617 (17)0.0670 (9)
H311.210 (6)0.4151 (6)0.0228 (2)0.080*
H320.889 (3)0.3722 (18)−0.0149 (13)0.080*
C20.6160 (10)0.1529 (3)0.2485 (2)0.0565 (9)
H20.59440.09020.20560.068*
C30.7709 (10)0.2678 (3)0.22785 (19)0.0517 (8)
C40.7961 (10)0.3597 (3)0.2905 (2)0.0574 (9)
H40.89540.44060.27860.069*
C50.6755 (12)0.3321 (3)0.3700 (2)0.0648 (11)
H50.69310.39320.41400.078*
C60.5291 (13)0.2149 (4)0.3845 (2)0.0673 (10)
H60.44740.19660.43970.081*
C70.9030 (11)0.2833 (3)0.14019 (19)0.0545 (8)
U11U22U33U12U13U23
O10.089 (2)0.0590 (14)0.0593 (13)0.0139 (16)0.0077 (16)−0.0061 (11)
N10.075 (2)0.0528 (15)0.0586 (15)−0.0012 (19)0.0015 (17)0.0083 (13)
N20.083 (2)0.0536 (15)0.0468 (13)0.0037 (17)0.0062 (16)0.0023 (12)
N30.083 (2)0.0649 (17)0.0526 (14)−0.004 (2)0.0038 (18)0.0066 (13)
C20.071 (2)0.0457 (15)0.0528 (16)0.0009 (18)−0.0027 (18)0.0009 (13)
C30.062 (2)0.0440 (14)0.0496 (15)0.0019 (17)−0.0038 (16)−0.0007 (13)
C40.071 (2)0.0475 (16)0.0535 (16)0.0034 (19)−0.0040 (18)−0.0040 (14)
C50.089 (3)0.0574 (18)0.0480 (16)0.004 (2)−0.004 (2)−0.0041 (14)
C60.083 (3)0.066 (2)0.0526 (17)0.005 (2)0.002 (2)0.0060 (16)
C70.063 (2)0.0497 (15)0.0505 (15)0.0023 (18)−0.0032 (17)−0.0014 (14)
O1—C71.230 (4)C2—H20.9500
N1—C21.334 (4)C3—C41.387 (4)
N1—C61.340 (4)C3—C71.490 (4)
N2—C71.335 (4)C4—C51.375 (4)
N2—N31.412 (4)C4—H40.9500
N2—H210.89 (4)C5—C61.373 (5)
N3—H310.84 (5)C5—H50.9500
N3—H321.00 (5)C6—H60.9500
C2—C31.385 (4)
C2—N1—C6116.8 (3)C5—C4—C3119.1 (3)
C7—N2—N3123.1 (3)C5—C4—H4120.5
C7—N2—H21121.2C3—C4—H4120.5
N3—N2—H21115.4C6—C5—C4118.9 (3)
N2—N3—H31108.4C6—C5—H5120.6
N2—N3—H32108.7C4—C5—H5120.6
H31—N3—H32103.9N1—C6—C5123.5 (3)
N1—C2—C3124.0 (3)N1—C6—H6118.2
N1—C2—H2118.0C5—C6—H6118.2
C3—C2—H2118.0O1—C7—N2123.2 (3)
C2—C3—C4117.7 (3)O1—C7—C3120.9 (3)
C2—C3—C7117.6 (3)N2—C7—C3115.8 (3)
C4—C3—C7124.6 (3)
C6—N1—C2—C30.0 (6)C4—C5—C6—N1−0.3 (7)
N1—C2—C3—C4−1.1 (6)N3—N2—C7—O10.2 (7)
N1—C2—C3—C7178.1 (4)N3—N2—C7—C3179.8 (4)
C2—C3—C4—C51.5 (6)C2—C3—C7—O1−33.7 (6)
C7—C3—C4—C5−177.6 (4)C4—C3—C7—O1145.5 (4)
C3—C4—C5—C6−0.9 (6)C2—C3—C7—N2146.7 (4)
C2—N1—C6—C50.7 (7)C4—C3—C7—N2−34.2 (6)
D—H···AD—HH···AD···AD—H···A
N2—H21···N1i0.89 (4)2.09 (4)2.964 (4)168 (4)
N3—H31···O1ii0.84 (5)2.57 (5)3.146 (4)127 (4)
N3—H32···O1iii1.00 (5)2.08 (5)3.027 (4)157 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H21⋯N1i0.89 (4)2.09 (4)2.964 (4)168 (4)
N3—H31⋯O1ii0.84 (5)2.57 (5)3.146 (4)127 (4)
N3—H32⋯O1iii1.00 (5)2.08 (5)3.027 (4)157 (4)

Symmetry codes: (i) ; (ii) ; (iii) .

  6 in total

1.  Visualization and characterization of non-covalent networks in molecular crystals: automated assignment of graph-set descriptors for asymmetric molecules.

Authors: 
Journal:  Acta Crystallogr B       Date:  1999-12-01

2.  SHELXL: high-resolution refinement.

Authors:  G M Sheldrick; T R Schneider
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

3.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01

4.  Experimental charge density and electrostatic potential in nicotinamide.

Authors: 
Journal:  Acta Crystallogr B       Date:  1999-02-01

5.  Hydrogen-bonded supramolecular motifs in the 1:1 monohydrated molecular adduct of acetoguanaminium chloride with acetoguanamine and in 2,4,6-triaminopyrimidinediium dichloride dihydrate.

Authors:  Gustavo Portalone; Marcello Colapietro
Journal:  Acta Crystallogr C       Date:  2007-10-13       Impact factor: 1.172

6.  Nicotinohydrazide.

Authors:  Jacks P Priebe; Renata S Mello; Faruk Nome; Adailton J Bortoluzzi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2007-12-18
  6 in total
  2 in total

1.  2-(1H-Benzotriazol-1-yl)acetohydrazide.

Authors:  Yan-Xia Zhang; Zhi-Qiang Shi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-10

2.  Nicotinohydrazide.

Authors:  Jacks P Priebe; Renata S Mello; Faruk Nome; Adailton J Bortoluzzi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2007-12-18
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.