Literature DB >> 21200867

Nicotinohydrazide.

Jacks P Priebe1, Renata S Mello, Faruk Nome, Adailton J Bortoluzzi.   

Abstract

The title mol-ecule (alternative name: pyridine-3-carbohydrazide; C(6)H(7)N(3)O) was obtained from the reaction of ethyl nicotinate with hydrazine hydrate in methanol. In the amide group, the C-N bond is relatively short, suggesting some degree of electronic delocalization in the mol-ecule. The stabilized conformation may be compared with those of isomeric compounds picolinohydrazide (pyridine-2-carbohydrazide) and isonicotinohydrazide (pyridine-4-carbohydrazide). In the title isomer, the pyridine ring forms an angle of 33.79 (9)° with the plane of the non-H atoms of the hydrazide group. This lack of coplanarity between the hydrazide functionality and the pyridine ring is considerably greater than that observed in isonicotinohydrazide (dihedral angle = 17.14°), while picolinohydrazide is almost fully planar. The title isomer forms inter-molecular N-H⋯O and N-H⋯N hydrogen bonds, which stabilize the crystal structure.

Entities:  

Year:  2007        PMID: 21200867      PMCID: PMC2915351          DOI: 10.1107/S160053680706655X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The structure of the same compound has been determined independently and is reported in the following paper (Portalone & Colapietro, 2008 ▶). The structures of picolinohydrazide (Zareef et al., 2006 ▶) and isonicotinohydrazide (Jensen, 1954 ▶; Bhat et al., 1974) have been published. For related literature on the biological activity of these mol­ecules, see: Ouelleta et al. (2004 ▶); Zhao et al. (2007 ▶). For related literature, see: Bhat et al. (1974 ▶); Zareef et al. (2006 ▶).

Experimental

Crystal data

C6H7N3O M = 137.15 Orthorhombic, a = 3.8855 (7) Å b = 10.5191 (5) Å c = 15.9058 (9) Å V = 650.10 (13) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 293 (2) K 0.46 × 0.30 × 0.20 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: none 1534 measured reflections 1051 independent reflections 866 reflections with I > 2σ(I) R int = 0.015 3 standard reflections every 200 reflections intensity decay: <1%

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.087 S = 1.09 1051 reflections 92 parameters H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.15 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: HELENA (Spek, 1996 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: PLATON (Spek, 2003 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680706655X/bh2145sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680706655X/bh2145Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H7N3OF000 = 288
Mr = 137.15Dx = 1.401 Mg m3
Orthorhombic, P212121Mo Kα radiation λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 25 reflections
a = 3.8855 (7) Åθ = 5.5–18.7º
b = 10.5191 (5) ŵ = 0.10 mm1
c = 15.9058 (9) ÅT = 293 (2) K
V = 650.10 (13) Å3Prismatic, colourless
Z = 40.46 × 0.30 × 0.20 mm
Enraf–Nonius CAD-4 diffractometerRint = 0.015
Radiation source: fine-focus sealed tubeθmax = 29.0º
Monochromator: graphiteθmin = 2.3º
T = 293(2) Kh = −5→2
ω–2θ scansk = −14→0
Absorption correction: nonel = −21→0
1534 measured reflections3 standard reflections
1051 independent reflections every 200 reflections
866 reflections with I > 2σ(I) intensity decay: <1%
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.031  w = 1/[σ2(Fo2) + (0.0344P)2 + 0.1144P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.087(Δ/σ)max < 0.001
S = 1.09Δρmax = 0.18 e Å3
1051 reflectionsΔρmin = −0.15 e Å3
92 parametersExtinction correction: SHELXL97 (Sheldrick, 1997), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.040 (6)
Secondary atom site location: difference Fourier map
xyzUiso*/Ueq
C10.3825 (5)0.84759 (16)0.25136 (11)0.0373 (4)
H10.40070.90920.29300.045*
C20.2298 (5)0.73203 (14)0.27215 (10)0.0319 (4)
C30.2025 (5)0.64013 (16)0.20969 (10)0.0382 (4)
H30.10290.56170.22120.046*
C40.3262 (6)0.66735 (19)0.12995 (11)0.0455 (5)
H40.31140.60760.08700.055*
C50.4720 (7)0.78517 (19)0.11576 (11)0.0472 (5)
H50.55240.80320.06200.057*
C60.0965 (5)0.71648 (17)0.36028 (10)0.0344 (4)
N10.5043 (5)0.87491 (14)0.17489 (10)0.0440 (4)
N20.1167 (5)0.59906 (15)0.39179 (9)0.0405 (4)
H2N0.21550.53650.36370.049*
N3−0.0001 (5)0.56759 (16)0.47365 (9)0.0472 (4)
H3NA0.08770.61890.51120.057*
H3NB−0.21010.58760.47840.057*
O1−0.0227 (5)0.80795 (12)0.39876 (8)0.0487 (4)
U11U22U33U12U13U23
C10.0405 (9)0.0307 (7)0.0405 (9)0.0021 (8)−0.0023 (8)−0.0007 (6)
C20.0312 (8)0.0314 (7)0.0330 (7)0.0041 (8)−0.0025 (7)−0.0001 (6)
C30.0445 (11)0.0316 (8)0.0384 (8)0.0007 (8)−0.0049 (8)−0.0009 (7)
C40.0594 (14)0.0442 (9)0.0328 (8)0.0060 (11)−0.0039 (9)−0.0057 (7)
C50.0550 (13)0.0522 (10)0.0345 (8)0.0062 (11)0.0050 (9)0.0069 (8)
C60.0324 (9)0.0367 (8)0.0339 (7)0.0012 (8)−0.0035 (7)−0.0040 (7)
N10.0481 (10)0.0388 (7)0.0451 (8)0.0002 (8)0.0019 (8)0.0078 (6)
N20.0505 (10)0.0373 (7)0.0337 (7)0.0027 (7)0.0057 (7)0.0007 (6)
N30.0557 (11)0.0519 (9)0.0338 (7)−0.0021 (10)0.0028 (8)0.0045 (6)
O10.0604 (10)0.0447 (7)0.0409 (6)0.0120 (7)0.0060 (7)−0.0060 (5)
C1—N11.336 (2)C5—N11.338 (2)
C1—C21.392 (2)C5—H50.9300
C1—H10.9300C6—O11.231 (2)
C2—C31.390 (2)C6—N21.335 (2)
C2—C61.503 (2)N2—N31.418 (2)
C3—C41.386 (2)N2—H2N0.8830
C3—H30.9300N3—H3NA0.8746
C4—C51.381 (3)N3—H3NB0.8461
C4—H40.9300
N1—C1—C2123.70 (16)N1—C5—H5118.1
N1—C1—H1118.2C4—C5—H5118.1
C2—C1—H1118.2O1—C6—N2123.96 (16)
C3—C2—C1118.02 (16)O1—C6—C2120.55 (16)
C3—C2—C6124.35 (16)N2—C6—C2115.49 (15)
C1—C2—C6117.60 (15)C1—N1—C5117.04 (16)
C4—C3—C2118.93 (17)C6—N2—N3122.80 (15)
C4—C3—H3120.5C6—N2—H2N121.7
C2—C3—H3120.5N3—N2—H2N115.4
C5—C4—C3118.49 (17)N2—N3—H3NA111.0
C5—C4—H4120.8N2—N3—H3NB109.4
C3—C4—H4120.8H3NA—N3—H3NB99.3
N1—C5—C4123.81 (17)
D—H···AD—HH···AD···AD—H···A
N2—H2N···N1i0.882.112.975 (2)166
N3—H3NA···O1ii0.872.223.045 (2)157
N3—H3NB···O1iii0.852.553.155 (2)130
(I)(II)(III)
N2—N31.418 (2)1.4221.429
C6—N21.335 (2)1.3341.346
C6—O11.231 (2)1.2351.235
C6—C21.503 (2)1.5071.513
N3—N2—C6122.80 (15)121.45121.06
N2—C6—O1123.96 (16)123.04122.07
N2—C6—C2115.49 (15)116.08115.90
O1—C6—C2120.55 (16)120.87122.00
N3—N2—C6—O10.17 (32)177.39175.13
C2—N2—C6—N3179.56 (19)177.72173.03
N2—C6—C2—C334.62 (27)177.06162.86
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2N⋯N1i0.882.112.975 (2)166
N3—H3NA⋯O1ii0.872.223.045 (2)157
N3—H3NB⋯O1iii0.852.553.155 (2)130

Symmetry codes: (i) ; (ii) ; (iii) .

Table 2

Selected bond lengths (Å) of nicotinohydrazide (I), picolinic acid hydrazide (II) and isonicotinohydrazide (III)

 (I)(II)(III)
N2—N31.418 (2)1.4221.429
C6—N21.335 (2)1.3341.346
C6—O11.231 (2)1.2351.235
C6—C21.503 (2)1.5071.513
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