| Literature DB >> 21200867 |
Jacks P Priebe1, Renata S Mello, Faruk Nome, Adailton J Bortoluzzi.
Abstract
The title mol-ecule (alternative name: pyridine-3-carbohydrazide; C(6)H(7)N(3)O) was obtained from the reaction of ethyl nicotinate with hydrazine hydrate in methanol. In the amide group, the C-N bond is relatively short, suggesting some degree of electronic delocalization in the mol-ecule. The stabilized conformation may be compared with those of isomeric compounds picolinohydrazide (pyridine-2-carbohydrazide) and isonicotinohydrazide (pyridine-4-carbohydrazide). In the title isomer, the pyridine ring forms an angle of 33.79 (9)° with the plane of the non-H atoms of the hydrazide group. This lack of coplanarity between the hydrazide functionality and the pyridine ring is considerably greater than that observed in isonicotinohydrazide (dihedral angle = 17.14°), while picolinohydrazide is almost fully planar. The title isomer forms inter-molecular N-H⋯O and N-H⋯N hydrogen bonds, which stabilize the crystal structure.Entities:
Year: 2007 PMID: 21200867 PMCID: PMC2915351 DOI: 10.1107/S160053680706655X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H7N3O | |
| Orthorhombic, | Mo |
| Hall symbol: P 2ac 2ab | Cell parameters from 25 reflections |
| θ = 5.5–18.7º | |
| µ = 0.10 mm−1 | |
| Prismatic, colourless | |
| 0.46 × 0.30 × 0.20 mm |
| Enraf–Nonius CAD-4 diffractometer | |
| Radiation source: fine-focus sealed tube | θmax = 29.0º |
| Monochromator: graphite | θmin = 2.3º |
| ω–2θ scans | |
| Absorption correction: none | |
| 1534 measured reflections | 3 standard reflections |
| 1051 independent reflections | every 200 reflections |
| 866 reflections with | intensity decay: <1% |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| | |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.18 e Å−3 | |
| 1051 reflections | Δρmin = −0.15 e Å−3 |
| 92 parameters | Extinction correction: SHELXL97 (Sheldrick, 1997), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.040 (6) |
| Secondary atom site location: difference Fourier map |
| C1 | 0.3825 (5) | 0.84759 (16) | 0.25136 (11) | 0.0373 (4) | |
| H1 | 0.4007 | 0.9092 | 0.2930 | 0.045* | |
| C2 | 0.2298 (5) | 0.73203 (14) | 0.27215 (10) | 0.0319 (4) | |
| C3 | 0.2025 (5) | 0.64013 (16) | 0.20969 (10) | 0.0382 (4) | |
| H3 | 0.1029 | 0.5617 | 0.2212 | 0.046* | |
| C4 | 0.3262 (6) | 0.66735 (19) | 0.12995 (11) | 0.0455 (5) | |
| H4 | 0.3114 | 0.6076 | 0.0870 | 0.055* | |
| C5 | 0.4720 (7) | 0.78517 (19) | 0.11576 (11) | 0.0472 (5) | |
| H5 | 0.5524 | 0.8032 | 0.0620 | 0.057* | |
| C6 | 0.0965 (5) | 0.71648 (17) | 0.36028 (10) | 0.0344 (4) | |
| N1 | 0.5043 (5) | 0.87491 (14) | 0.17489 (10) | 0.0440 (4) | |
| N2 | 0.1167 (5) | 0.59906 (15) | 0.39179 (9) | 0.0405 (4) | |
| H2N | 0.2155 | 0.5365 | 0.3637 | 0.049* | |
| N3 | −0.0001 (5) | 0.56759 (16) | 0.47365 (9) | 0.0472 (4) | |
| H3NA | 0.0877 | 0.6189 | 0.5112 | 0.057* | |
| H3NB | −0.2101 | 0.5876 | 0.4784 | 0.057* | |
| O1 | −0.0227 (5) | 0.80795 (12) | 0.39876 (8) | 0.0487 (4) |
| C1 | 0.0405 (9) | 0.0307 (7) | 0.0405 (9) | 0.0021 (8) | −0.0023 (8) | −0.0007 (6) |
| C2 | 0.0312 (8) | 0.0314 (7) | 0.0330 (7) | 0.0041 (8) | −0.0025 (7) | −0.0001 (6) |
| C3 | 0.0445 (11) | 0.0316 (8) | 0.0384 (8) | 0.0007 (8) | −0.0049 (8) | −0.0009 (7) |
| C4 | 0.0594 (14) | 0.0442 (9) | 0.0328 (8) | 0.0060 (11) | −0.0039 (9) | −0.0057 (7) |
| C5 | 0.0550 (13) | 0.0522 (10) | 0.0345 (8) | 0.0062 (11) | 0.0050 (9) | 0.0069 (8) |
| C6 | 0.0324 (9) | 0.0367 (8) | 0.0339 (7) | 0.0012 (8) | −0.0035 (7) | −0.0040 (7) |
| N1 | 0.0481 (10) | 0.0388 (7) | 0.0451 (8) | 0.0002 (8) | 0.0019 (8) | 0.0078 (6) |
| N2 | 0.0505 (10) | 0.0373 (7) | 0.0337 (7) | 0.0027 (7) | 0.0057 (7) | 0.0007 (6) |
| N3 | 0.0557 (11) | 0.0519 (9) | 0.0338 (7) | −0.0021 (10) | 0.0028 (8) | 0.0045 (6) |
| O1 | 0.0604 (10) | 0.0447 (7) | 0.0409 (6) | 0.0120 (7) | 0.0060 (7) | −0.0060 (5) |
| C1—N1 | 1.336 (2) | C5—N1 | 1.338 (2) |
| C1—C2 | 1.392 (2) | C5—H5 | 0.9300 |
| C1—H1 | 0.9300 | C6—O1 | 1.231 (2) |
| C2—C3 | 1.390 (2) | C6—N2 | 1.335 (2) |
| C2—C6 | 1.503 (2) | N2—N3 | 1.418 (2) |
| C3—C4 | 1.386 (2) | N2—H2N | 0.8830 |
| C3—H3 | 0.9300 | N3—H3NA | 0.8746 |
| C4—C5 | 1.381 (3) | N3—H3NB | 0.8461 |
| C4—H4 | 0.9300 | ||
| N1—C1—C2 | 123.70 (16) | N1—C5—H5 | 118.1 |
| N1—C1—H1 | 118.2 | C4—C5—H5 | 118.1 |
| C2—C1—H1 | 118.2 | O1—C6—N2 | 123.96 (16) |
| C3—C2—C1 | 118.02 (16) | O1—C6—C2 | 120.55 (16) |
| C3—C2—C6 | 124.35 (16) | N2—C6—C2 | 115.49 (15) |
| C1—C2—C6 | 117.60 (15) | C1—N1—C5 | 117.04 (16) |
| C4—C3—C2 | 118.93 (17) | C6—N2—N3 | 122.80 (15) |
| C4—C3—H3 | 120.5 | C6—N2—H2N | 121.7 |
| C2—C3—H3 | 120.5 | N3—N2—H2N | 115.4 |
| C5—C4—C3 | 118.49 (17) | N2—N3—H3NA | 111.0 |
| C5—C4—H4 | 120.8 | N2—N3—H3NB | 109.4 |
| C3—C4—H4 | 120.8 | H3NA—N3—H3NB | 99.3 |
| N1—C5—C4 | 123.81 (17) |
| H··· | ||||
| N2—H2N···N1i | 0.88 | 2.11 | 2.975 (2) | 166 |
| N3—H3NA···O1ii | 0.87 | 2.22 | 3.045 (2) | 157 |
| N3—H3NB···O1iii | 0.85 | 2.55 | 3.155 (2) | 130 |
| (I) | (II) | (III) | |
| N2—N3 | 1.418 (2) | 1.422 | 1.429 |
| C6—N2 | 1.335 (2) | 1.334 | 1.346 |
| C6—O1 | 1.231 (2) | 1.235 | 1.235 |
| C6—C2 | 1.503 (2) | 1.507 | 1.513 |
| N3—N2—C6 | 122.80 (15) | 121.45 | 121.06 |
| N2—C6—O1 | 123.96 (16) | 123.04 | 122.07 |
| N2—C6—C2 | 115.49 (15) | 116.08 | 115.90 |
| O1—C6—C2 | 120.55 (16) | 120.87 | 122.00 |
| N3—N2—C6—O1 | 0.17 (32) | 177.39 | 175.13 |
| C2—N2—C6—N3 | 179.56 (19) | 177.72 | 173.03 |
| N2—C6—C2—C3 | 34.62 (27) | 177.06 | 162.86 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2N⋯N1i | 0.88 | 2.11 | 2.975 (2) | 166 |
| N3—H3N | 0.87 | 2.22 | 3.045 (2) | 157 |
| N3—H3N | 0.85 | 2.55 | 3.155 (2) | 130 |
Symmetry codes: (i) ; (ii) ; (iii) .
Selected bond lengths (Å) of nicotinohydrazide (I), picolinic acid hydrazide (II) and isonicotinohydrazide (III)
| (I) | (II) | (III) | |
|---|---|---|---|
| N2—N3 | 1.418 (2) | 1.422 | 1.429 |
| C6—N2 | 1.335 (2) | 1.334 | 1.346 |
| C6—O1 | 1.231 (2) | 1.235 | 1.235 |
| C6—C2 | 1.503 (2) | 1.507 | 1.513 |