Literature DB >> 21754436

Piperazine-1,4-diium pyridine-2,3-dicarboxyl-ate methanol monosolvate.

Faranak Manteghi, Mohammad Ghadermazi, Nasrin Kakaei.   

Abstract

The title solvated molecular salt, C(4)H(12)N(2) (2+)·C(7)H(3)NO(4) (2-)·CH(3)OH or (pipzH(2))(py-2,3-dc)·MeOH, was prepared by the reaction of pyridine-2,3-dicarb-oxy-lic acid (py-2,3-dcH(2)) and piperazine (pipz) in methanol (MeOH) as solvent. One of the two carboxylate groups of the acid fragment is nearly perpendicular to the pyridine ring and the other is almost in its plane [C-C-C-O torsion angles = -85.50 (11) and 88.07 (11)° and N-C-C-O torsion angles = -176.31 (8) and 5.41 (13)°]. In the crystal, the components are linked by O-H⋯O, N-H⋯O and C-H⋯O hydrogen bonds, generating a three-dimensional network.

Entities:  

Year:  2011        PMID: 21754436      PMCID: PMC3089228          DOI: 10.1107/S1600536811012384

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For similar ion pairs, see: Aghabozorg, Manteghi & Ghadermazi (2008 ▶); Aghabozorg, Manteghi & Sheshmani (2008 ▶). For related metal complexes, see: Barszcz et al. (2010 ▶); Li & Li (2004 ▶).

Experimental

Crystal data

C4H12N2 2+·C7H3NO4 2−·CH4O M = 285.30 Monoclinic, a = 8.2541 (6) Å b = 11.8988 (8) Å c = 13.8197 (9) Å β = 90.288 (2)° V = 1357.27 (16) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 100 K 0.25 × 0.20 × 0.10 mm

Data collection

Bruker SMART APEXII diffractometer 16044 measured reflections 3579 independent reflections 3189 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.085 S = 1.03 3579 reflections 182 parameters H-atom parameters constrained Δρmax = 0.42 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811012384/om2416sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811012384/om2416Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C4H12N22+·C7H3NO42·CH4OF(000) = 608
Mr = 285.30Dx = 1.396 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 7483 reflections
a = 8.2541 (6) Åθ = 2.3–28.1°
b = 11.8988 (8) ŵ = 0.11 mm1
c = 13.8197 (9) ÅT = 100 K
β = 90.288 (2)°Prism, colourless
V = 1357.27 (16) Å30.25 × 0.20 × 0.10 mm
Z = 4
Bruker SMART APEXII diffractometer3189 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.023
graphiteθmax = 29.0°, θmin = 2.3°
Detector resolution: 8.3 pixels mm-1h = −11→11
φ and ω scansk = −16→16
16044 measured reflectionsl = −18→18
3579 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: difference Fourier map
wR(F2) = 0.085H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.035P)2 + 0.650P] where P = (Fo2 + 2Fc2)/3
3579 reflections(Δ/σ)max = 0.001
182 parametersΔρmax = 0.42 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.16285 (8)0.76486 (6)0.03344 (5)0.01401 (15)
O20.21626 (9)0.91599 (6)0.12414 (6)0.01918 (16)
O3−0.13943 (9)0.61040 (6)0.03291 (5)0.01666 (16)
O4−0.11791 (9)0.70279 (6)−0.10648 (5)0.01627 (15)
N1−0.09833 (10)0.97903 (7)0.11968 (6)0.01339 (17)
N20.17152 (10)1.11819 (7)0.21302 (6)0.01264 (16)
H2A0.14101.17460.17350.015*
H2B0.15381.05230.18280.015*
N30.31476 (10)1.05117 (7)0.39424 (6)0.01304 (16)
H3A0.33491.11890.42060.016*
H3B0.34730.99870.43710.016*
C1−0.05754 (11)0.88142 (8)0.07675 (6)0.01078 (17)
C2−0.17210 (11)0.80866 (8)0.03586 (7)0.01165 (18)
C3−0.33567 (12)0.83780 (9)0.04316 (7)0.01506 (19)
H3−0.41690.78960.01750.018*
C4−0.37860 (12)0.93756 (9)0.08809 (7)0.0166 (2)
H4−0.48910.95850.09430.020*
C5−0.25545 (12)1.00615 (9)0.12379 (7)0.01563 (19)
H5−0.28451.07580.15250.019*
C60.12243 (11)0.85332 (8)0.07816 (7)0.01183 (18)
C7−0.13540 (11)0.69936 (8)−0.01603 (7)0.01243 (18)
C80.07828 (12)1.12692 (9)0.30451 (7)0.01538 (19)
H8A−0.03831.11490.29080.018*
H8B0.09141.20320.33200.018*
C90.34843 (12)1.13038 (8)0.23146 (7)0.01367 (18)
H9A0.37091.20590.25840.016*
H9B0.40801.12310.16980.016*
C100.40670 (12)1.04139 (8)0.30194 (7)0.01438 (19)
H10A0.39010.96580.27370.017*
H10B0.52391.05130.31480.017*
C110.13684 (12)1.04015 (9)0.37760 (7)0.0162 (2)
H11A0.07901.05080.43950.019*
H11B0.11210.96370.35330.019*
O50.39165 (9)0.71135 (8)−0.09625 (6)0.02485 (19)
H5A0.32550.7344−0.05370.037*
C120.29401 (15)0.65794 (12)−0.16692 (9)0.0302 (3)
H1A0.34270.6679−0.23090.045*
H1B0.18550.6913−0.16670.045*
H1C0.28610.5776−0.15220.045*
U11U22U33U12U13U23
O10.0156 (3)0.0103 (3)0.0162 (3)0.0017 (2)0.0019 (3)−0.0011 (3)
O20.0139 (3)0.0188 (4)0.0248 (4)0.0001 (3)−0.0031 (3)−0.0083 (3)
O30.0236 (4)0.0110 (3)0.0153 (3)−0.0009 (3)−0.0041 (3)0.0011 (3)
O40.0233 (4)0.0130 (3)0.0124 (3)0.0028 (3)−0.0019 (3)−0.0007 (3)
N10.0154 (4)0.0117 (4)0.0130 (4)0.0005 (3)0.0011 (3)−0.0010 (3)
N20.0152 (4)0.0111 (4)0.0116 (4)0.0003 (3)−0.0022 (3)0.0000 (3)
N30.0168 (4)0.0105 (4)0.0118 (4)−0.0007 (3)−0.0025 (3)0.0007 (3)
C10.0128 (4)0.0103 (4)0.0093 (4)0.0003 (3)0.0007 (3)0.0009 (3)
C20.0143 (4)0.0109 (4)0.0097 (4)0.0003 (3)−0.0006 (3)0.0008 (3)
C30.0135 (4)0.0173 (5)0.0144 (4)−0.0005 (3)−0.0013 (3)−0.0005 (4)
C40.0134 (4)0.0201 (5)0.0163 (4)0.0037 (4)0.0002 (3)0.0002 (4)
C50.0181 (5)0.0136 (4)0.0152 (4)0.0032 (4)0.0023 (3)−0.0016 (3)
C60.0132 (4)0.0111 (4)0.0112 (4)0.0005 (3)0.0006 (3)0.0015 (3)
C70.0117 (4)0.0115 (4)0.0141 (4)0.0001 (3)−0.0035 (3)−0.0015 (3)
C80.0142 (4)0.0172 (5)0.0148 (4)0.0009 (4)0.0003 (3)0.0002 (4)
C90.0142 (4)0.0137 (4)0.0132 (4)−0.0004 (3)−0.0002 (3)0.0007 (3)
C100.0154 (4)0.0146 (4)0.0130 (4)0.0021 (3)−0.0011 (3)−0.0002 (3)
C110.0160 (5)0.0168 (5)0.0159 (4)−0.0040 (4)−0.0006 (3)0.0028 (4)
O50.0159 (4)0.0345 (5)0.0242 (4)−0.0027 (3)0.0035 (3)−0.0117 (3)
C120.0239 (6)0.0398 (7)0.0269 (6)−0.0016 (5)0.0002 (5)−0.0160 (5)
O1—C61.2662 (12)C3—H30.9500
O2—C61.2469 (12)C4—C51.3920 (14)
O3—C71.2566 (12)C4—H40.9500
O4—C71.2597 (12)C5—H50.9500
N1—C51.3379 (13)C8—C111.5215 (14)
N1—C11.3477 (12)C8—H8A0.9900
N2—C81.4871 (12)C8—H8B0.9900
N2—C91.4881 (12)C9—C101.5155 (13)
N2—H2A0.9001C9—H9A0.9900
N2—H2B0.9001C9—H9B0.9900
N3—C111.4911 (13)C10—H10A0.9900
N3—C101.4920 (12)C10—H10B0.9900
N3—H3A0.9000C11—H11A0.9900
N3—H3B0.9001C11—H11B0.9900
C1—C21.3992 (13)O5—C121.4139 (14)
C1—C61.5227 (13)O5—H5A0.8500
C2—C31.3981 (13)C12—H1A0.9800
C2—C71.5164 (13)C12—H1B0.9800
C3—C41.3864 (14)C12—H1C0.9800
C5—N1—C1118.09 (8)O4—C7—C2117.75 (8)
C8—N2—C9111.05 (7)N2—C8—C11110.67 (8)
C8—N2—H2A108.6N2—C8—H8A109.5
C9—N2—H2A107.6C11—C8—H8A109.5
C8—N2—H2B111.9N2—C8—H8B109.5
C9—N2—H2B108.8C11—C8—H8B109.5
H2A—N2—H2B108.9H8A—C8—H8B108.1
C11—N3—C10111.47 (7)N2—C9—C10110.48 (8)
C11—N3—H3A108.7N2—C9—H9A109.6
C10—N3—H3A108.9C10—C9—H9A109.6
C11—N3—H3B109.3N2—C9—H9B109.6
C10—N3—H3B110.9C10—C9—H9B109.6
H3A—N3—H3B107.5H9A—C9—H9B108.1
N1—C1—C2122.77 (9)N3—C10—C9109.50 (8)
N1—C1—C6115.44 (8)N3—C10—H10A109.8
C2—C1—C6121.77 (8)C9—C10—H10A109.8
C3—C2—C1117.92 (9)N3—C10—H10B109.8
C3—C2—C7116.24 (8)C9—C10—H10B109.8
C1—C2—C7125.84 (8)H10A—C10—H10B108.2
C4—C3—C2119.59 (9)N3—C11—C8110.61 (8)
C4—C3—H3120.2N3—C11—H11A109.5
C2—C3—H3120.2C8—C11—H11A109.5
C3—C4—C5118.22 (9)N3—C11—H11B109.5
C3—C4—H4120.9C8—C11—H11B109.5
C5—C4—H4120.9H11A—C11—H11B108.1
N1—C5—C4123.36 (9)C12—O5—H5A104.9
N1—C5—H5118.3O5—C12—H1A109.5
C4—C5—H5118.3O5—C12—H1B109.5
O2—C6—O1125.55 (9)H1A—C12—H1B109.5
O2—C6—C1118.59 (8)O5—C12—H1C109.5
O1—C6—C1115.84 (8)H1A—C12—H1C109.5
O3—C7—O4124.39 (9)H1B—C12—H1C109.5
O3—C7—C2117.52 (8)
C5—N1—C1—C20.66 (14)N1—C1—C6—O1−176.31 (8)
C5—N1—C1—C6−177.60 (8)C2—C1—C6—O15.41 (13)
N1—C1—C2—C3−2.12 (14)C3—C2—C7—O3−85.50 (11)
C6—C1—C2—C3176.03 (8)C1—C2—C7—O394.23 (12)
N1—C1—C2—C7178.16 (9)C3—C2—C7—O488.07 (11)
C6—C1—C2—C7−3.69 (14)C1—C2—C7—O4−92.20 (12)
C1—C2—C3—C41.40 (14)C9—N2—C8—C11−56.46 (10)
C7—C2—C3—C4−178.84 (9)C8—N2—C9—C1058.30 (10)
C2—C3—C4—C50.61 (15)C11—N3—C10—C957.68 (10)
C1—N1—C5—C41.56 (15)N2—C9—C10—N3−58.17 (10)
C3—C4—C5—N1−2.20 (15)C10—N3—C11—C8−56.39 (11)
N1—C1—C6—O25.41 (13)N2—C8—C11—N355.14 (11)
C2—C1—C6—O2−172.86 (9)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O4i0.901.742.6257 (11)168
N2—H2B···O20.901.892.7274 (11)155
N3—H3A···O1ii0.901.852.7379 (11)169
N3—H3B···O3iii0.901.862.7393 (11)166
O5—H5A···O10.851.842.6867 (10)171
C3—H3···O5iv0.952.413.3163 (13)159
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O4i0.901.742.6257 (11)168
N2—H2B⋯O20.901.892.7274 (11)155
N3—H3A⋯O1ii0.901.852.7379 (11)169
N3—H3B⋯O3iii0.901.862.7393 (11)166
O5—H5A⋯O10.851.842.6867 (10)171
C3—H3⋯O5iv0.952.413.3163 (13)159

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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