| Literature DB >> 21754436 |
Faranak Manteghi, Mohammad Ghadermazi, Nasrin Kakaei.
Abstract
The title solvated molecular salt, C(4)H(12)N(2) (2+)·C(7)H(3)NO(4) (2-)·CH(3)OH or (pipzH(2))(py-2,3-dc)·MeOH, was prepared by the reaction of pyridine-2,3-dicarb-oxy-lic acid (py-2,3-dcH(2)) and piperazine (pipz) in methanol (MeOH) as solvent. One of the two carboxylate groups of the acid fragment is nearly perpendicular to the pyridine ring and the other is almost in its plane [C-C-C-O torsion angles = -85.50 (11) and 88.07 (11)° and N-C-C-O torsion angles = -176.31 (8) and 5.41 (13)°]. In the crystal, the components are linked by O-H⋯O, N-H⋯O and C-H⋯O hydrogen bonds, generating a three-dimensional network.Entities:
Year: 2011 PMID: 21754436 PMCID: PMC3089228 DOI: 10.1107/S1600536811012384
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C4H12N22+·C7H3NO42−·CH4O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 7483 reflections |
| θ = 2.3–28.1° | |
| µ = 0.11 mm−1 | |
| β = 90.288 (2)° | Prism, colourless |
| 0.25 × 0.20 × 0.10 mm | |
| Bruker SMART APEXII diffractometer | 3189 reflections with |
| Radiation source: fine-focus sealed tube | |
| graphite | θmax = 29.0°, θmin = 2.3° |
| Detector resolution: 8.3 pixels mm-1 | |
| φ and ω scans | |
| 16044 measured reflections | |
| 3579 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: difference Fourier map | |
| H-atom parameters constrained | |
| 3579 reflections | (Δ/σ)max = 0.001 |
| 182 parameters | Δρmax = 0.42 e Å−3 |
| 0 restraints | Δρmin = −0.21 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.16285 (8) | 0.76486 (6) | 0.03344 (5) | 0.01401 (15) | |
| O2 | 0.21626 (9) | 0.91599 (6) | 0.12414 (6) | 0.01918 (16) | |
| O3 | −0.13943 (9) | 0.61040 (6) | 0.03291 (5) | 0.01666 (16) | |
| O4 | −0.11791 (9) | 0.70279 (6) | −0.10648 (5) | 0.01627 (15) | |
| N1 | −0.09833 (10) | 0.97903 (7) | 0.11968 (6) | 0.01339 (17) | |
| N2 | 0.17152 (10) | 1.11819 (7) | 0.21302 (6) | 0.01264 (16) | |
| H2A | 0.1410 | 1.1746 | 0.1735 | 0.015* | |
| H2B | 0.1538 | 1.0523 | 0.1828 | 0.015* | |
| N3 | 0.31476 (10) | 1.05117 (7) | 0.39424 (6) | 0.01304 (16) | |
| H3A | 0.3349 | 1.1189 | 0.4206 | 0.016* | |
| H3B | 0.3473 | 0.9987 | 0.4371 | 0.016* | |
| C1 | −0.05754 (11) | 0.88142 (8) | 0.07675 (6) | 0.01078 (17) | |
| C2 | −0.17210 (11) | 0.80866 (8) | 0.03586 (7) | 0.01165 (18) | |
| C3 | −0.33567 (12) | 0.83780 (9) | 0.04316 (7) | 0.01506 (19) | |
| H3 | −0.4169 | 0.7896 | 0.0175 | 0.018* | |
| C4 | −0.37860 (12) | 0.93756 (9) | 0.08809 (7) | 0.0166 (2) | |
| H4 | −0.4891 | 0.9585 | 0.0943 | 0.020* | |
| C5 | −0.25545 (12) | 1.00615 (9) | 0.12379 (7) | 0.01563 (19) | |
| H5 | −0.2845 | 1.0758 | 0.1525 | 0.019* | |
| C6 | 0.12243 (11) | 0.85332 (8) | 0.07816 (7) | 0.01183 (18) | |
| C7 | −0.13540 (11) | 0.69936 (8) | −0.01603 (7) | 0.01243 (18) | |
| C8 | 0.07828 (12) | 1.12692 (9) | 0.30451 (7) | 0.01538 (19) | |
| H8A | −0.0383 | 1.1149 | 0.2908 | 0.018* | |
| H8B | 0.0914 | 1.2032 | 0.3320 | 0.018* | |
| C9 | 0.34843 (12) | 1.13038 (8) | 0.23146 (7) | 0.01367 (18) | |
| H9A | 0.3709 | 1.2059 | 0.2584 | 0.016* | |
| H9B | 0.4080 | 1.1231 | 0.1698 | 0.016* | |
| C10 | 0.40670 (12) | 1.04139 (8) | 0.30194 (7) | 0.01438 (19) | |
| H10A | 0.3901 | 0.9658 | 0.2737 | 0.017* | |
| H10B | 0.5239 | 1.0513 | 0.3148 | 0.017* | |
| C11 | 0.13684 (12) | 1.04015 (9) | 0.37760 (7) | 0.0162 (2) | |
| H11A | 0.0790 | 1.0508 | 0.4395 | 0.019* | |
| H11B | 0.1121 | 0.9637 | 0.3533 | 0.019* | |
| O5 | 0.39165 (9) | 0.71135 (8) | −0.09625 (6) | 0.02485 (19) | |
| H5A | 0.3255 | 0.7344 | −0.0537 | 0.037* | |
| C12 | 0.29401 (15) | 0.65794 (12) | −0.16692 (9) | 0.0302 (3) | |
| H1A | 0.3427 | 0.6679 | −0.2309 | 0.045* | |
| H1B | 0.1855 | 0.6913 | −0.1667 | 0.045* | |
| H1C | 0.2861 | 0.5776 | −0.1522 | 0.045* |
| O1 | 0.0156 (3) | 0.0103 (3) | 0.0162 (3) | 0.0017 (2) | 0.0019 (3) | −0.0011 (3) |
| O2 | 0.0139 (3) | 0.0188 (4) | 0.0248 (4) | 0.0001 (3) | −0.0031 (3) | −0.0083 (3) |
| O3 | 0.0236 (4) | 0.0110 (3) | 0.0153 (3) | −0.0009 (3) | −0.0041 (3) | 0.0011 (3) |
| O4 | 0.0233 (4) | 0.0130 (3) | 0.0124 (3) | 0.0028 (3) | −0.0019 (3) | −0.0007 (3) |
| N1 | 0.0154 (4) | 0.0117 (4) | 0.0130 (4) | 0.0005 (3) | 0.0011 (3) | −0.0010 (3) |
| N2 | 0.0152 (4) | 0.0111 (4) | 0.0116 (4) | 0.0003 (3) | −0.0022 (3) | 0.0000 (3) |
| N3 | 0.0168 (4) | 0.0105 (4) | 0.0118 (4) | −0.0007 (3) | −0.0025 (3) | 0.0007 (3) |
| C1 | 0.0128 (4) | 0.0103 (4) | 0.0093 (4) | 0.0003 (3) | 0.0007 (3) | 0.0009 (3) |
| C2 | 0.0143 (4) | 0.0109 (4) | 0.0097 (4) | 0.0003 (3) | −0.0006 (3) | 0.0008 (3) |
| C3 | 0.0135 (4) | 0.0173 (5) | 0.0144 (4) | −0.0005 (3) | −0.0013 (3) | −0.0005 (4) |
| C4 | 0.0134 (4) | 0.0201 (5) | 0.0163 (4) | 0.0037 (4) | 0.0002 (3) | 0.0002 (4) |
| C5 | 0.0181 (5) | 0.0136 (4) | 0.0152 (4) | 0.0032 (4) | 0.0023 (3) | −0.0016 (3) |
| C6 | 0.0132 (4) | 0.0111 (4) | 0.0112 (4) | 0.0005 (3) | 0.0006 (3) | 0.0015 (3) |
| C7 | 0.0117 (4) | 0.0115 (4) | 0.0141 (4) | 0.0001 (3) | −0.0035 (3) | −0.0015 (3) |
| C8 | 0.0142 (4) | 0.0172 (5) | 0.0148 (4) | 0.0009 (4) | 0.0003 (3) | 0.0002 (4) |
| C9 | 0.0142 (4) | 0.0137 (4) | 0.0132 (4) | −0.0004 (3) | −0.0002 (3) | 0.0007 (3) |
| C10 | 0.0154 (4) | 0.0146 (4) | 0.0130 (4) | 0.0021 (3) | −0.0011 (3) | −0.0002 (3) |
| C11 | 0.0160 (5) | 0.0168 (5) | 0.0159 (4) | −0.0040 (4) | −0.0006 (3) | 0.0028 (4) |
| O5 | 0.0159 (4) | 0.0345 (5) | 0.0242 (4) | −0.0027 (3) | 0.0035 (3) | −0.0117 (3) |
| C12 | 0.0239 (6) | 0.0398 (7) | 0.0269 (6) | −0.0016 (5) | 0.0002 (5) | −0.0160 (5) |
| O1—C6 | 1.2662 (12) | C3—H3 | 0.9500 |
| O2—C6 | 1.2469 (12) | C4—C5 | 1.3920 (14) |
| O3—C7 | 1.2566 (12) | C4—H4 | 0.9500 |
| O4—C7 | 1.2597 (12) | C5—H5 | 0.9500 |
| N1—C5 | 1.3379 (13) | C8—C11 | 1.5215 (14) |
| N1—C1 | 1.3477 (12) | C8—H8A | 0.9900 |
| N2—C8 | 1.4871 (12) | C8—H8B | 0.9900 |
| N2—C9 | 1.4881 (12) | C9—C10 | 1.5155 (13) |
| N2—H2A | 0.9001 | C9—H9A | 0.9900 |
| N2—H2B | 0.9001 | C9—H9B | 0.9900 |
| N3—C11 | 1.4911 (13) | C10—H10A | 0.9900 |
| N3—C10 | 1.4920 (12) | C10—H10B | 0.9900 |
| N3—H3A | 0.9000 | C11—H11A | 0.9900 |
| N3—H3B | 0.9001 | C11—H11B | 0.9900 |
| C1—C2 | 1.3992 (13) | O5—C12 | 1.4139 (14) |
| C1—C6 | 1.5227 (13) | O5—H5A | 0.8500 |
| C2—C3 | 1.3981 (13) | C12—H1A | 0.9800 |
| C2—C7 | 1.5164 (13) | C12—H1B | 0.9800 |
| C3—C4 | 1.3864 (14) | C12—H1C | 0.9800 |
| C5—N1—C1 | 118.09 (8) | O4—C7—C2 | 117.75 (8) |
| C8—N2—C9 | 111.05 (7) | N2—C8—C11 | 110.67 (8) |
| C8—N2—H2A | 108.6 | N2—C8—H8A | 109.5 |
| C9—N2—H2A | 107.6 | C11—C8—H8A | 109.5 |
| C8—N2—H2B | 111.9 | N2—C8—H8B | 109.5 |
| C9—N2—H2B | 108.8 | C11—C8—H8B | 109.5 |
| H2A—N2—H2B | 108.9 | H8A—C8—H8B | 108.1 |
| C11—N3—C10 | 111.47 (7) | N2—C9—C10 | 110.48 (8) |
| C11—N3—H3A | 108.7 | N2—C9—H9A | 109.6 |
| C10—N3—H3A | 108.9 | C10—C9—H9A | 109.6 |
| C11—N3—H3B | 109.3 | N2—C9—H9B | 109.6 |
| C10—N3—H3B | 110.9 | C10—C9—H9B | 109.6 |
| H3A—N3—H3B | 107.5 | H9A—C9—H9B | 108.1 |
| N1—C1—C2 | 122.77 (9) | N3—C10—C9 | 109.50 (8) |
| N1—C1—C6 | 115.44 (8) | N3—C10—H10A | 109.8 |
| C2—C1—C6 | 121.77 (8) | C9—C10—H10A | 109.8 |
| C3—C2—C1 | 117.92 (9) | N3—C10—H10B | 109.8 |
| C3—C2—C7 | 116.24 (8) | C9—C10—H10B | 109.8 |
| C1—C2—C7 | 125.84 (8) | H10A—C10—H10B | 108.2 |
| C4—C3—C2 | 119.59 (9) | N3—C11—C8 | 110.61 (8) |
| C4—C3—H3 | 120.2 | N3—C11—H11A | 109.5 |
| C2—C3—H3 | 120.2 | C8—C11—H11A | 109.5 |
| C3—C4—C5 | 118.22 (9) | N3—C11—H11B | 109.5 |
| C3—C4—H4 | 120.9 | C8—C11—H11B | 109.5 |
| C5—C4—H4 | 120.9 | H11A—C11—H11B | 108.1 |
| N1—C5—C4 | 123.36 (9) | C12—O5—H5A | 104.9 |
| N1—C5—H5 | 118.3 | O5—C12—H1A | 109.5 |
| C4—C5—H5 | 118.3 | O5—C12—H1B | 109.5 |
| O2—C6—O1 | 125.55 (9) | H1A—C12—H1B | 109.5 |
| O2—C6—C1 | 118.59 (8) | O5—C12—H1C | 109.5 |
| O1—C6—C1 | 115.84 (8) | H1A—C12—H1C | 109.5 |
| O3—C7—O4 | 124.39 (9) | H1B—C12—H1C | 109.5 |
| O3—C7—C2 | 117.52 (8) | ||
| C5—N1—C1—C2 | 0.66 (14) | N1—C1—C6—O1 | −176.31 (8) |
| C5—N1—C1—C6 | −177.60 (8) | C2—C1—C6—O1 | 5.41 (13) |
| N1—C1—C2—C3 | −2.12 (14) | C3—C2—C7—O3 | −85.50 (11) |
| C6—C1—C2—C3 | 176.03 (8) | C1—C2—C7—O3 | 94.23 (12) |
| N1—C1—C2—C7 | 178.16 (9) | C3—C2—C7—O4 | 88.07 (11) |
| C6—C1—C2—C7 | −3.69 (14) | C1—C2—C7—O4 | −92.20 (12) |
| C1—C2—C3—C4 | 1.40 (14) | C9—N2—C8—C11 | −56.46 (10) |
| C7—C2—C3—C4 | −178.84 (9) | C8—N2—C9—C10 | 58.30 (10) |
| C2—C3—C4—C5 | 0.61 (15) | C11—N3—C10—C9 | 57.68 (10) |
| C1—N1—C5—C4 | 1.56 (15) | N2—C9—C10—N3 | −58.17 (10) |
| C3—C4—C5—N1 | −2.20 (15) | C10—N3—C11—C8 | −56.39 (11) |
| N1—C1—C6—O2 | 5.41 (13) | N2—C8—C11—N3 | 55.14 (11) |
| C2—C1—C6—O2 | −172.86 (9) |
| H··· | ||||
| N2—H2A···O4i | 0.90 | 1.74 | 2.6257 (11) | 168 |
| N2—H2B···O2 | 0.90 | 1.89 | 2.7274 (11) | 155 |
| N3—H3A···O1ii | 0.90 | 1.85 | 2.7379 (11) | 169 |
| N3—H3B···O3iii | 0.90 | 1.86 | 2.7393 (11) | 166 |
| O5—H5A···O1 | 0.85 | 1.84 | 2.6867 (10) | 171 |
| C3—H3···O5iv | 0.95 | 2.41 | 3.3163 (13) | 159 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2 | 0.90 | 1.74 | 2.6257 (11) | 168 |
| N2—H2 | 0.90 | 1.89 | 2.7274 (11) | 155 |
| N3—H3 | 0.90 | 1.85 | 2.7379 (11) | 169 |
| N3—H3 | 0.90 | 1.86 | 2.7393 (11) | 166 |
| O5—H5 | 0.85 | 1.84 | 2.6867 (10) | 171 |
| C3—H3⋯O5iv | 0.95 | 2.41 | 3.3163 (13) | 159 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .