Literature DB >> 21200716

3-Phenyl-1-(pyrrol-2-yl)prop-2-en-1-one.

Zhen-Qi Gong1, Gou-Sheng Liu, Hong-Ying Xia.   

Abstract

The title mol-ecule, C(13)H(11)NO, is almost flat, the angle between the pyrrole and the phenyl rings being 10.9 (1)°. The atoms of the central C(3)O unit are coplanar, with a mean deviation from the plane of 0.001 (1) Å. The angles between this plane and the pyrrole and phenyl rings are 3.3 (1) and 8.0 (1)°, respectively. The mol-ecules form centrosymmetric dimers through a pair of N-H⋯O hydrogen bonds with an R(2) (2)(10) motif.

Entities:  

Year:  2007        PMID: 21200716      PMCID: PMC2915219          DOI: 10.1107/S1600536807063489

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of the biological and the pharmaceutical properties of chalcones, see: Chen et al. (1999 ▶); Dimmock et al. (1999 ▶); Go et al. (2005 ▶); Lin et al. (2002 ▶); Lunardi et al. (2003 ▶); Opletalova (2000 ▶). For other related literature, see: Gong & Shen (2007 ▶); Kumaran et al. (1996 ▶); Shanmuga Sundara Raj et al. (1997 ▶, 1998 ▶). For a description of hydrogen-bond motifs, see: Etter et al. (1990 ▶).

Experimental

Crystal data

C13H11NO M = 197.23 Monoclinic, a = 19.848 (4) Å b = 5.6435 (12) Å c = 19.325 (4) Å β = 101.535 (4)° V = 2120.9 (8) Å3 Z = 8 Mo Kα radiation μ = 0.08 mm−1 T = 293 (2) K 0.34 × 0.13 × 0.11 mm

Data collection

Bruker APEX area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.974, T max = 0.991 5274 measured reflections 2069 independent reflections 1164 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.137 S = 1.00 2069 reflections 136 parameters H-atom parameters constrained Δρmax = 0.13 e Å−3 Δρmin = −0.13 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1990 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: SHELXTL (Bruker, 2002 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536807063489/fb2072sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807063489/fb2072Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H11NOF000 = 832
Mr = 197.23Dx = 1.235 Mg m3
Monoclinic, C2/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 642 reflections
a = 19.848 (4) Åθ = 2.7–24.7º
b = 5.6435 (12) ŵ = 0.08 mm1
c = 19.325 (4) ÅT = 293 (2) K
β = 101.535 (4)ºPrism, light yellow
V = 2120.9 (8) Å30.34 × 0.13 × 0.11 mm
Z = 8
Bruker APEX area-detector diffractometer2069 independent reflections
Radiation source: fine-focus sealed tube1164 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.040
T = 293(2) Kθmax = 26.0º
φ and ω scansθmin = 2.1º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996)h = −24→23
Tmin = 0.974, Tmax = 0.991k = −6→6
5274 measured reflectionsl = −14→23
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.054H-atom parameters constrained
wR(F2) = 0.137  w = 1/[σ2(Fo2) + (0.0534P)2 + 0.0616P] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max < 0.001
2069 reflectionsΔρmax = 0.13 e Å3
136 parametersΔρmin = −0.13 e Å3
44 constraintsExtinction correction: none
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.54821 (8)0.1673 (3)0.58099 (8)0.0776 (5)
N10.41400 (9)0.2050 (3)0.50060 (9)0.0635 (5)
H10.43490.08470.48740.076*
C10.44232 (11)0.3625 (4)0.55205 (10)0.0547 (6)
C20.39177 (12)0.5253 (4)0.55675 (12)0.0673 (7)
H20.39610.65360.58750.081*
C30.33346 (12)0.4656 (4)0.50787 (13)0.0762 (7)
H30.29160.54560.49970.091*
C40.34890 (12)0.2665 (4)0.47383 (12)0.0724 (7)
H40.31910.18710.43800.087*
C50.51165 (12)0.3362 (4)0.59096 (11)0.0586 (6)
C60.53729 (12)0.5178 (4)0.64459 (11)0.0640 (6)
H60.50830.64270.65030.077*
C70.59949 (12)0.5118 (4)0.68497 (11)0.0609 (6)
H70.62740.38600.67750.073*
C80.62940 (11)0.6813 (4)0.74025 (10)0.0564 (6)
C90.69227 (11)0.6324 (4)0.78395 (11)0.0645 (6)
H90.71590.49530.77670.077*
C100.72018 (13)0.7842 (5)0.83802 (13)0.0733 (7)
H100.76220.74860.86710.088*
C110.68593 (15)0.9879 (5)0.84886 (13)0.0780 (8)
H110.70461.08980.88550.094*
C120.62420 (14)1.0411 (4)0.80554 (13)0.0782 (7)
H120.60111.17940.81280.094*
C130.59620 (13)0.8898 (4)0.75115 (12)0.0699 (7)
H130.55470.92830.72160.084*
U11U22U33U12U13U23
O10.0839 (12)0.0726 (11)0.0687 (11)0.0236 (9)−0.0030 (8)−0.0209 (8)
N10.0670 (12)0.0654 (12)0.0563 (11)0.0096 (10)0.0076 (9)−0.0115 (10)
C10.0643 (14)0.0543 (14)0.0453 (12)0.0030 (11)0.0102 (11)−0.0051 (11)
C20.0730 (15)0.0639 (16)0.0651 (15)0.0084 (13)0.0138 (13)−0.0107 (12)
C30.0672 (15)0.0833 (18)0.0767 (17)0.0166 (14)0.0114 (14)−0.0072 (14)
C40.0619 (15)0.0858 (18)0.0661 (15)0.0029 (14)0.0051 (12)−0.0102 (14)
C50.0749 (16)0.0527 (14)0.0486 (13)0.0075 (12)0.0134 (11)−0.0024 (11)
C60.0732 (15)0.0575 (15)0.0609 (14)0.0051 (12)0.0123 (12)−0.0109 (11)
C70.0684 (14)0.0583 (15)0.0579 (14)0.0009 (12)0.0174 (12)−0.0049 (11)
C80.0646 (14)0.0539 (14)0.0521 (13)−0.0081 (12)0.0154 (11)−0.0037 (11)
C90.0660 (15)0.0655 (15)0.0631 (15)−0.0076 (12)0.0157 (12)−0.0018 (12)
C100.0717 (16)0.0802 (18)0.0669 (16)−0.0221 (15)0.0110 (12)−0.0012 (14)
C110.104 (2)0.0711 (19)0.0591 (15)−0.0342 (16)0.0157 (15)−0.0060 (13)
C120.108 (2)0.0550 (15)0.0728 (18)−0.0107 (15)0.0210 (16)−0.0106 (13)
C130.0828 (16)0.0579 (14)0.0672 (16)−0.0021 (13)0.0105 (13)−0.0049 (12)
O1—C51.236 (2)C7—C81.468 (3)
N1—C41.338 (3)C7—H70.9300
N1—C11.368 (2)C8—C131.385 (3)
N1—H10.8600C8—C91.387 (3)
C1—C21.377 (3)C9—C101.379 (3)
C1—C51.438 (3)C9—H90.9300
C2—C31.381 (3)C10—C111.373 (3)
C2—H20.9300C10—H100.9300
C3—C41.367 (3)C11—C121.372 (3)
C3—H30.9300C11—H110.9300
C4—H40.9300C12—C131.382 (3)
C5—C61.474 (3)C12—H120.9300
C6—C71.322 (3)C13—H130.9300
C6—H60.9300
C4—N1—C1109.70 (18)C6—C7—C8127.4 (2)
C4—N1—H1125.2C6—C7—H7116.3
C1—N1—H1125.2C8—C7—H7116.3
N1—C1—C2106.42 (18)C13—C8—C9118.3 (2)
N1—C1—C5121.59 (19)C13—C8—C7121.9 (2)
C2—C1—C5132.0 (2)C9—C8—C7119.8 (2)
C1—C2—C3108.3 (2)C10—C9—C8120.9 (2)
C1—C2—H2125.8C10—C9—H9119.5
C3—C2—H2125.8C8—C9—H9119.5
C4—C3—C2107.0 (2)C11—C10—C9120.0 (2)
C4—C3—H3126.5C11—C10—H10120.0
C2—C3—H3126.5C9—C10—H10120.0
N1—C4—C3108.6 (2)C12—C11—C10119.9 (2)
N1—C4—H4125.7C12—C11—H11120.0
C3—C4—H4125.7C10—C11—H11120.0
O1—C5—C1121.92 (19)C11—C12—C13120.2 (3)
O1—C5—C6121.0 (2)C11—C12—H12119.9
C1—C5—C6117.1 (2)C13—C12—H12119.9
C7—C6—C5123.2 (2)C12—C13—C8120.6 (2)
C7—C6—H6118.4C12—C13—H13119.7
C5—C6—H6118.4C8—C13—H13119.7
C4—N1—C1—C20.4 (2)C1—C5—C6—C7178.6 (2)
C4—N1—C1—C5178.7 (2)C5—C6—C7—C8−179.1 (2)
N1—C1—C2—C3−0.3 (3)C6—C7—C8—C13−7.4 (3)
C5—C1—C2—C3−178.3 (2)C6—C7—C8—C9171.7 (2)
C1—C2—C3—C40.1 (3)C13—C8—C9—C101.6 (3)
C1—N1—C4—C3−0.3 (3)C7—C8—C9—C10−177.45 (19)
C2—C3—C4—N10.2 (3)C8—C9—C10—C11−0.5 (3)
N1—C1—C5—O1−1.8 (3)C9—C10—C11—C12−0.5 (4)
C2—C1—C5—O1175.9 (2)C10—C11—C12—C130.2 (4)
N1—C1—C5—C6179.22 (18)C11—C12—C13—C81.0 (4)
C2—C1—C5—C6−3.0 (4)C9—C8—C13—C12−1.9 (3)
O1—C5—C6—C7−0.4 (3)C7—C8—C13—C12177.2 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.862.022.817 (2)155
C7—H7···O10.932.512.835 (3)101
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O1i0.862.022.817 (2)155
C7—H7⋯O10.932.512.835 (3)101

Symmetry code: (i) .

  8 in total

Review 1.  Bioactivities of chalcones.

Authors:  J R Dimmock; D W Elias; M A Beazely; N M Kandepu
Journal:  Curr Med Chem       Date:  1999-12       Impact factor: 4.530

2.  Trypanocidal and leishmanicidal properties of substitution-containing chalcones.

Authors:  Fabiane Lunardi; Michel Guzela; Andrea T Rodrigues; Rogério Corrêa; Iriane Eger-Mangrich; Mário Steindel; Edmundo C Grisard; Jamil Assreuy; João B Calixto; Adair R S Santos
Journal:  Antimicrob Agents Chemother       Date:  2003-04       Impact factor: 5.191

3.  SHELXL: high-resolution refinement.

Authors:  G M Sheldrick; T R Schneider
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

4.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01

Review 5.  Chalcones: an update on cytotoxic and chemoprotective properties.

Authors:  M L Go; X Wu; X L Liu
Journal:  Curr Med Chem       Date:  2005       Impact factor: 4.530

Review 6.  [Chalcones and their heterocyclic analogs as potential therapeutic agents in bacterial diseases].

Authors:  V Opletalová
Journal:  Ceska Slov Farm       Date:  2000-11

7.  The antileishmanial activity of novel oxygenated chalcones and their mechanism of action.

Authors:  L Zhai; M Chen; J Blom; T G Theander; S B Christensen; A Kharazmi
Journal:  J Antimicrob Chemother       Date:  1999-06       Impact factor: 5.790

8.  Chalcones and flavonoids as anti-tuberculosis agents.

Authors:  Yuh-Meei Lin; Yasheen Zhou; Michael T Flavin; Li-Ming Zhou; Weiguo Nie; Fa-Ching Chen
Journal:  Bioorg Med Chem       Date:  2002-08       Impact factor: 3.641

  8 in total
  3 in total

1.  4,4-Dimethyl-1-(3-nitro-phen-yl)pent-1-en-3-one.

Authors:  Ping Chen; Lin Xia; Ai-Xi Hu; Jiao Ye
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-20

2.  3-(4-Methoxy-phen-yl)-1-(2-pyrrol-yl)prop-2-en-1-one.

Authors:  Dong-Qing Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-09-13

3.  1-(4-Chloro-phen-yl)-4,4-dimethyl-pent-1-en-3-one.

Authors:  Tian-Quan Wu; Lin Xia; Ai-Xi Hu; Jiao Ye
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-28
  3 in total

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