Literature DB >> 21200681

2-Amino-pyrimidinium picrate.

B Narayana, B K Sarojini, K Prakash Kamath, H S Yathirajan, Michael Bolte.   

Abstract

The geometric parameters of the title compound, C(4)H(6)N(3) (+)·C(6)H(2)N(3)O(7) (-), are in the usual ranges. While two nitro groups are almost coplanar with the aromatic picrate ring [dihedral angles 3.0 (2) and 4.4 (3)°], the third is significantly twisted out of this plane [dihedral angle 46.47 (8)°]. Anions and cations are connected via N-H⋯O hydrogen bonds. The mol-ecules crystallize in planes parallel to (11).

Entities:  

Year:  2007        PMID: 21200681      PMCID: PMC2915188          DOI: 10.1107/S1600536807062599

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Barraclough & Smith (1995 ▶); Etter et al. (1990 ▶); Fischer et al. (2007 ▶); Goswami et al. (2000 ▶); Gueiffier et al. (1996 ▶); Katritzky et al. (2003 ▶); Rival et al. (1991 ▶); Sanfilippo et al. (1988 ▶); Scheinbeim & Schempp (1976 ▶); Schlueter et al. (2006 ▶); Tully et al. (1991 ▶); Yathirajan, Bindya et al. (2007a ▶,b ▶); Yathirajan, Mayekar et al. (2007 ▶); Yathirajan, Narayana et al. (2007 ▶).

Experimental

Crystal data

C4H6N3 +·C6H2N3O7 − M = 324.22 Triclinic, a = 5.8803 (7) Å b = 8.0025 (10) Å c = 13.8108 (17) Å α = 88.021 (10)° β = 82.322 (9)° γ = 88.739 (10)° V = 643.59 (14) Å3 Z = 2 Mo Kα radiation μ = 0.14 mm−1 T = 173 (2) K 0.26 × 0.22 × 0.09 mm

Data collection

Stoe IPDSII two-circle diffractometer Absorption correction: none 8757 measured reflections 2402 independent reflections 1927 reflections with I > 2σ(I) R int = 0.042

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.099 S = 1.01 2402 reflections 220 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.27 e Å−3 Data collection: X-AREA (Stoe & Cie, 2001 ▶); cell refinement: X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXS97 (Sheldrick, 1990 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: PLATON (Spek, 2003 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536807062599/at2509sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807062599/at2509Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C4H6N3+·C6H2N3O7Z = 2
Mr = 324.22F000 = 332
Triclinic, P1Dx = 1.673 Mg m3
Hall symbol: -P 1Mo Kα radiation λ = 0.71073 Å
a = 5.8803 (7) ÅCell parameters from 8213 reflections
b = 8.0025 (10) Åθ = 3.5–25.8º
c = 13.8108 (17) ŵ = 0.15 mm1
α = 88.021 (10)ºT = 173 (2) K
β = 82.322 (9)ºPlate, yellow
γ = 88.739 (10)º0.26 × 0.22 × 0.09 mm
V = 643.59 (14) Å3
Stoe IPDSII two-circle diffractometer1927 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.042
Monochromator: graphiteθmax = 25.6º
T = 173(2) Kθmin = 3.5º
ω scansh = −7→7
Absorption correction: nonek = −9→9
8757 measured reflectionsl = −16→16
2402 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.036H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.099  w = 1/[σ2(Fo2) + (0.0661P)2] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max < 0.001
2402 reflectionsΔρmax = 0.20 e Å3
220 parametersΔρmin = −0.27 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.7277 (3)0.40774 (18)0.07873 (11)0.0279 (3)
H1A0.799 (3)0.422 (2)0.0195 (16)0.033 (5)*
H1B0.600 (4)0.346 (3)0.0984 (15)0.039 (5)*
C10.8282 (3)0.47463 (18)0.14768 (11)0.0199 (3)
N20.7333 (2)0.45943 (15)0.24319 (9)0.0206 (3)
H20.604 (4)0.400 (3)0.2556 (15)0.039 (5)*
C30.8321 (3)0.52828 (18)0.31540 (11)0.0229 (3)
H30.76180.51830.38140.027*
C41.0334 (3)0.61214 (19)0.29261 (11)0.0241 (3)
H41.10760.66090.34150.029*
C51.1247 (3)0.62249 (18)0.19338 (12)0.0229 (3)
H51.26540.67910.17620.027*
N61.0274 (2)0.55855 (15)0.12224 (9)0.0228 (3)
C110.2209 (2)0.17922 (17)0.24085 (11)0.0194 (3)
C120.0995 (2)0.17467 (18)0.33896 (11)0.0196 (3)
C13−0.1064 (2)0.09207 (18)0.36532 (11)0.0201 (3)
H13−0.18090.09310.43070.024*
C14−0.2010 (2)0.00844 (17)0.29461 (11)0.0197 (3)
C15−0.0957 (3)0.00409 (18)0.19783 (11)0.0209 (3)
H15−0.1612−0.05600.15060.025*
C160.1043 (2)0.08881 (18)0.17311 (11)0.0197 (3)
N110.1908 (2)0.26127 (16)0.41664 (10)0.0238 (3)
N12−0.4142 (2)−0.08122 (16)0.32163 (10)0.0250 (3)
N130.2118 (2)0.08312 (16)0.07100 (9)0.0226 (3)
O110.41007 (18)0.24842 (14)0.21384 (8)0.0276 (3)
O120.3751 (2)0.33240 (17)0.39985 (9)0.0371 (3)
O130.0778 (2)0.2607 (2)0.49744 (9)0.0534 (4)
O14−0.5137 (2)−0.07121 (17)0.40512 (9)0.0396 (3)
O15−0.4859 (2)−0.16322 (15)0.25825 (10)0.0366 (3)
O160.2234 (2)−0.05385 (14)0.03198 (9)0.0323 (3)
O170.2799 (2)0.21390 (15)0.02874 (9)0.0334 (3)
U11U22U33U12U13U23
N10.0296 (8)0.0360 (8)0.0185 (7)−0.0172 (6)−0.0015 (6)−0.0027 (6)
C10.0220 (7)0.0191 (7)0.0183 (7)−0.0042 (5)−0.0013 (6)−0.0009 (6)
N20.0207 (6)0.0211 (6)0.0201 (7)−0.0059 (5)−0.0014 (5)−0.0018 (5)
C30.0273 (8)0.0228 (7)0.0186 (8)−0.0021 (6)−0.0026 (6)−0.0037 (6)
C40.0275 (8)0.0234 (7)0.0227 (8)−0.0042 (6)−0.0063 (6)−0.0054 (6)
C50.0226 (7)0.0211 (7)0.0254 (8)−0.0073 (6)−0.0034 (6)−0.0035 (6)
N60.0244 (7)0.0235 (6)0.0206 (7)−0.0087 (5)−0.0015 (5)−0.0031 (5)
C110.0190 (7)0.0181 (7)0.0215 (8)−0.0028 (5)−0.0030 (6)−0.0020 (6)
C120.0205 (7)0.0205 (7)0.0187 (8)−0.0034 (6)−0.0049 (6)−0.0030 (6)
C130.0200 (7)0.0199 (7)0.0199 (8)−0.0011 (5)−0.0007 (6)0.0001 (6)
C140.0158 (7)0.0179 (7)0.0255 (8)−0.0042 (5)−0.0022 (6)−0.0012 (6)
C150.0221 (7)0.0193 (7)0.0226 (8)−0.0019 (5)−0.0063 (6)−0.0048 (6)
C160.0208 (7)0.0208 (7)0.0176 (8)−0.0014 (6)−0.0025 (6)−0.0018 (6)
N110.0244 (7)0.0276 (7)0.0196 (7)−0.0063 (5)−0.0023 (5)−0.0039 (5)
N120.0193 (6)0.0241 (6)0.0316 (8)−0.0048 (5)−0.0031 (5)−0.0008 (6)
N130.0212 (6)0.0270 (7)0.0201 (7)−0.0026 (5)−0.0035 (5)−0.0052 (5)
O110.0226 (6)0.0368 (6)0.0233 (6)−0.0141 (5)0.0006 (4)−0.0050 (5)
O120.0342 (7)0.0518 (8)0.0267 (6)−0.0260 (6)−0.0030 (5)−0.0070 (5)
O130.0449 (8)0.0925 (12)0.0221 (7)−0.0335 (7)0.0095 (6)−0.0245 (7)
O140.0298 (7)0.0545 (8)0.0322 (7)−0.0175 (6)0.0075 (5)−0.0038 (6)
O150.0306 (6)0.0386 (7)0.0425 (8)−0.0170 (5)−0.0067 (5)−0.0107 (6)
O160.0375 (7)0.0321 (6)0.0272 (6)−0.0035 (5)−0.0006 (5)−0.0137 (5)
O170.0422 (7)0.0339 (6)0.0227 (6)−0.0089 (5)0.0017 (5)0.0014 (5)
N1—C11.320 (2)C12—C131.392 (2)
N1—H1A0.87 (2)C12—N111.4631 (19)
N1—H1B0.91 (2)C13—C141.385 (2)
C1—N61.3622 (19)C13—H130.9500
C1—N21.3643 (19)C14—C151.397 (2)
N2—C31.3572 (19)C14—N121.4568 (18)
N2—H20.90 (2)C15—C161.368 (2)
C3—C41.368 (2)C15—H150.9500
C3—H30.9500C16—N131.4682 (19)
C4—C51.404 (2)N11—O131.2202 (18)
C4—H40.9500N11—O121.2262 (17)
C5—N61.324 (2)N12—O141.2258 (18)
C5—H50.9500N12—O151.2349 (17)
C11—O111.2588 (18)N13—O171.2289 (17)
C11—C121.444 (2)N13—O161.2345 (17)
C11—C161.452 (2)
C1—N1—H1A115.1 (13)C13—C12—N11116.45 (13)
C1—N1—H1B117.1 (13)C11—C12—N11120.10 (12)
H1A—N1—H1B127.5 (19)C14—C13—C12118.89 (14)
N1—C1—N6119.19 (14)C14—C13—H13120.6
N1—C1—N2120.24 (13)C12—C13—H13120.6
N6—C1—N2120.57 (13)C13—C14—C15122.04 (13)
C3—N2—C1121.42 (13)C13—C14—N12119.44 (14)
C3—N2—H2122.1 (13)C15—C14—N12118.50 (13)
C1—N2—H2116.5 (13)C16—C15—C14118.09 (13)
N2—C3—C4119.58 (14)C16—C15—H15121.0
N2—C3—H3120.2C14—C15—H15121.0
C4—C3—H3120.2C15—C16—C11124.88 (14)
C3—C4—C5116.62 (14)C15—C16—N13117.24 (13)
C3—C4—H4121.7C11—C16—N13117.85 (12)
C5—C4—H4121.7O13—N11—O12121.68 (13)
N6—C5—C4124.25 (14)O13—N11—C12118.02 (12)
N6—C5—H5117.9O12—N11—C12120.30 (13)
C4—C5—H5117.9O14—N12—O15123.36 (13)
C5—N6—C1117.53 (13)O14—N12—C14118.93 (13)
O11—C11—C12125.89 (13)O15—N12—C14117.70 (13)
O11—C11—C16121.46 (13)O17—N13—O16123.85 (13)
C12—C11—C16112.63 (13)O17—N13—C16118.75 (12)
C13—C12—C11123.45 (13)O16—N13—C16117.38 (12)
N1—C1—N2—C3−179.40 (14)C14—C15—C16—C112.1 (2)
N6—C1—N2—C30.7 (2)C14—C15—C16—N13−179.82 (13)
C1—N2—C3—C4−1.3 (2)O11—C11—C16—C15176.85 (14)
N2—C3—C4—C50.6 (2)C12—C11—C16—C15−1.5 (2)
C3—C4—C5—N60.7 (2)O11—C11—C16—N13−1.2 (2)
C4—C5—N6—C1−1.3 (2)C12—C11—C16—N13−179.53 (12)
N1—C1—N6—C5−179.32 (15)C13—C12—N11—O13−2.7 (2)
N2—C1—N6—C50.6 (2)C11—C12—N11—O13176.73 (15)
O11—C11—C12—C13−178.11 (14)C13—C12—N11—O12177.68 (14)
C16—C11—C12—C130.2 (2)C11—C12—N11—O12−2.9 (2)
O11—C11—C12—N112.5 (2)C13—C14—N12—O144.9 (2)
C16—C11—C12—N11−179.19 (12)C15—C14—N12—O14−176.38 (14)
C11—C12—C13—C140.4 (2)C13—C14—N12—O15−175.46 (14)
N11—C12—C13—C14179.81 (13)C15—C14—N12—O153.2 (2)
C12—C13—C14—C150.2 (2)C15—C16—N13—O17133.79 (15)
C12—C13—C14—N12178.82 (13)C11—C16—N13—O17−48.03 (19)
C13—C14—C15—C16−1.4 (2)C15—C16—N13—O16−44.61 (19)
N12—C14—C15—C16179.93 (13)C11—C16—N13—O16133.57 (14)
D—H···AD—HH···AD···AD—H···A
N1—H1A···N6i0.87 (2)2.09 (2)2.958 (2)177.0 (18)
N1—H1B···O110.91 (2)1.97 (2)2.7577 (19)143.7 (18)
N1—H1B···O170.91 (2)2.50 (2)3.2488 (18)140.0 (17)
N2—H2···O110.90 (2)1.84 (2)2.6501 (16)148.6 (19)
N2—H2···O120.90 (2)2.31 (2)2.9792 (18)131.6 (17)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯N6i0.87 (2)2.09 (2)2.958 (2)177.0 (18)
N1—H1B⋯O110.91 (2)1.97 (2)2.7577 (19)143.7 (18)
N1—H1B⋯O170.91 (2)2.50 (2)3.2488 (18)140.0 (17)
N2—H2⋯O110.90 (2)1.84 (2)2.6501 (16)148.6 (19)
N2—H2⋯O120.90 (2)2.31 (2)2.9792 (18)131.6 (17)

Symmetry code: (i) .

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