Literature DB >> 21203048

(2,2'-Bipyridine)bis-(3-carboxy-pyrazine-2-carboxyl-ato)copper(II) dihydrate.

Hossein Aghabozorg, Mahdieh Parvizi, Elahe Sadrkhanlou.   

Abstract

The title six-coordinated distorted octa-hedral complex, [Cu(C(6)H(3)N(2)O(4))(2)(C(10)H(8)N(2))]·2H(2)O, consists of two 3-carboxy-pyrazine-2-carboxyl-ate anions and one 2,2'-bipyridine ligand. There is a twofold rotation axis positioned at the Cu(II) center. The N atoms of the pyrazine ring occupy the axial positions and two proton-transferred O atoms of tbe acid together with the two N atoms of the 2,2'-bipyridine ligand complete the equatorial plane. The inter-actions existing in the crystal structure are inter-molecular O-H⋯O hydrogen bonds, and C-H⋯O and C-O⋯π inter-actions (O⋯π =3.145 Å, C-O⋯π = 149.75°).

Entities:  

Year:  2008        PMID: 21203048      PMCID: PMC2961978          DOI: 10.1107/S1600536808022885

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

There are several compounds made from pyrazine-2,3-dicarboxylic acid, but most of them are in a polymeric form; see, for example: Tombul et al. (2007 ▶, 2008 ▶). For related literature, see: Egli & Sarkhel (2007 ▶).

Experimental

Crystal data

[Cu(C6H3N2O4)2(C10H8N2)]·2H2O M = 589.96 Monoclinic, a = 18.3080 (8) Å b = 9.2168 (4) Å c = 16.3235 (7) Å β = 122.480 (5)° V = 2323.59 (18) Å3 Z = 4 Mo Kα radiation μ = 1.01 mm−1 T = 100 (2) K 0.20 × 0.20 × 0.20 mm

Data collection

Bruker SMART APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.823, T max = 0.823 14982 measured reflections 3500 independent reflections 3289 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.023 wR(F 2) = 0.063 S = 1.04 3500 reflections 177 parameters H-atom parameters constrained Δρmax = 0.49 e Å−3 Δρmin = −0.31 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808022885/om2248sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808022885/om2248Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C6H3N2O4)2(C10H8N2)]·2H2OF000 = 1204
Mr = 589.96Dx = 1.686 Mg m3
Monoclinic, C2/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 9557 reflections
a = 18.3080 (8) Åθ = 2.6–30.5º
b = 9.2168 (4) ŵ = 1.01 mm1
c = 16.3235 (7) ÅT = 100 (2) K
β = 122.480 (5)ºPrism, colourless
V = 2323.59 (18) Å30.20 × 0.20 × 0.20 mm
Z = 4
Bruker SMART APEXII diffractometer3500 independent reflections
Radiation source: fine-focus sealed tube3289 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.017
T = 100(2) Kθmax = 30.5º
φ and ω scansθmin = 2.6º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996)h = −26→26
Tmin = 0.823, Tmax = 0.823k = −13→13
14982 measured reflectionsl = −23→23
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.023H-atom parameters constrained
wR(F2) = 0.063  w = 1/[σ2(Fo2) + (0.04P)2 + 1.2P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.001
3500 reflectionsΔρmax = 0.49 e Å3
177 parametersΔρmin = −0.31 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu11.00000.367362 (16)0.25000.01104 (5)
O10.91326 (4)0.21893 (8)0.16501 (5)0.01386 (13)
O20.85176 (5)0.08782 (9)0.02861 (6)0.02271 (16)
O30.90660 (5)0.00760 (8)−0.12364 (6)0.02014 (15)
H3O0.8658−0.0282−0.18040.024*
O40.81385 (5)0.19258 (9)−0.16881 (6)0.02211 (16)
N11.02854 (5)0.32913 (9)0.12702 (6)0.01404 (15)
N21.01283 (6)0.27792 (10)−0.05007 (6)0.01888 (17)
N30.91587 (5)0.53313 (8)0.19274 (6)0.01230 (14)
C10.96492 (6)0.24626 (10)0.05929 (7)0.01255 (15)
C20.95681 (6)0.22146 (10)−0.02994 (7)0.01416 (16)
C31.07722 (7)0.35806 (12)0.01940 (8)0.01958 (19)
H3A1.11870.39830.00790.023*
C41.08554 (7)0.38463 (11)0.10811 (8)0.01748 (18)
H4A1.13210.44260.15560.021*
C50.90413 (6)0.17769 (10)0.08456 (7)0.01334 (16)
C60.88379 (7)0.13731 (10)−0.11323 (7)0.01512 (17)
C70.82914 (6)0.52122 (10)0.13793 (7)0.01459 (16)
H7A0.80390.42740.11970.018*
C80.77532 (6)0.64164 (10)0.10722 (7)0.01620 (18)
H8A0.71420.63070.06920.019*
C90.81274 (6)0.77869 (11)0.13324 (7)0.01659 (17)
H9A0.77730.86300.11260.020*
C100.90229 (6)0.79146 (10)0.18959 (7)0.01464 (17)
H10A0.92890.88430.20760.018*
C110.95228 (5)0.66600 (10)0.21923 (6)0.01133 (15)
O50.80282 (5)0.09628 (8)0.20844 (6)0.01843 (14)
H5A0.83350.13290.18970.022*
H5B0.76440.16140.19570.022*
U11U22U33U12U13U23
Cu10.01075 (8)0.00986 (8)0.01153 (8)0.0000.00533 (6)0.000
O10.0162 (3)0.0146 (3)0.0136 (3)−0.0032 (2)0.0099 (3)−0.0027 (2)
O20.0255 (4)0.0255 (4)0.0199 (4)−0.0116 (3)0.0140 (3)−0.0098 (3)
O30.0209 (3)0.0171 (3)0.0184 (3)0.0053 (3)0.0079 (3)−0.0022 (3)
O40.0193 (3)0.0250 (4)0.0179 (3)0.0082 (3)0.0072 (3)−0.0017 (3)
N10.0152 (3)0.0137 (3)0.0149 (4)0.0000 (3)0.0092 (3)0.0009 (3)
N20.0181 (4)0.0255 (4)0.0168 (4)0.0038 (3)0.0118 (3)0.0035 (3)
N30.0119 (3)0.0124 (3)0.0118 (3)0.0001 (3)0.0058 (3)0.0001 (3)
C10.0141 (4)0.0121 (4)0.0132 (4)0.0018 (3)0.0085 (3)0.0013 (3)
C20.0149 (4)0.0154 (4)0.0132 (4)0.0040 (3)0.0082 (3)0.0019 (3)
C30.0171 (4)0.0257 (5)0.0204 (5)0.0016 (3)0.0131 (4)0.0045 (4)
C40.0156 (4)0.0196 (4)0.0184 (4)−0.0010 (3)0.0099 (4)0.0018 (3)
C50.0146 (4)0.0134 (4)0.0133 (4)−0.0003 (3)0.0083 (3)−0.0002 (3)
C60.0178 (4)0.0169 (4)0.0133 (4)0.0035 (3)0.0101 (4)0.0005 (3)
C70.0122 (4)0.0142 (4)0.0154 (4)−0.0007 (3)0.0060 (3)−0.0004 (3)
C80.0120 (4)0.0171 (4)0.0162 (4)0.0008 (3)0.0054 (3)−0.0010 (3)
C90.0138 (4)0.0149 (4)0.0171 (4)0.0027 (3)0.0057 (3)−0.0008 (3)
C100.0144 (4)0.0122 (4)0.0153 (4)0.0006 (3)0.0067 (3)−0.0010 (3)
C110.0114 (4)0.0126 (4)0.0100 (4)0.0000 (3)0.0057 (3)0.0003 (3)
O50.0213 (3)0.0156 (3)0.0244 (4)0.0041 (3)0.0163 (3)0.0056 (3)
Cu1—O11.9880 (7)C2—C61.5117 (14)
Cu1—N32.0085 (8)C3—C41.3940 (15)
Cu1—N12.3565 (8)C3—H3A0.9500
O1—C51.2890 (11)C4—H4A0.9500
O2—C51.2243 (12)C7—C81.3869 (13)
O3—C61.3072 (12)C7—H7A0.9500
O3—H3O0.8844C8—C91.3903 (13)
O4—C61.2142 (12)C8—H8A0.9500
N1—C11.3340 (12)C9—C101.3886 (13)
N1—C41.3386 (12)C9—H9A0.9500
N2—C31.3362 (15)C10—C111.3904 (13)
N2—C21.3388 (12)C10—H10A0.9500
N3—C71.3446 (11)C11—C11i1.4754 (17)
N3—C111.3496 (12)O5—H5A0.8419
C1—C21.4012 (13)O5—H5B0.8612
C1—C51.5169 (12)
O1—Cu1—O1i93.03 (4)C4—C3—H3A118.9
O1—Cu1—N3i166.86 (3)N1—C4—C3120.57 (10)
O1—Cu1—N394.19 (3)N1—C4—H4A119.7
O1i—Cu1—N3166.86 (3)C3—C4—H4A119.7
N3i—Cu1—N380.95 (4)O2—C5—O1125.49 (9)
O1—Cu1—N1i91.84 (3)O2—C5—C1118.30 (8)
N3—Cu1—N1i92.57 (3)O1—C5—C1116.20 (8)
O1—Cu1—N176.24 (3)O4—C6—O3124.67 (10)
N3—Cu1—N1100.53 (3)O4—C6—C2121.68 (9)
N1i—Cu1—N1162.80 (4)O3—C6—C2113.34 (8)
C5—O1—Cu1122.13 (6)N3—C7—C8122.08 (9)
C6—O3—H3O109.2N3—C7—H7A119.0
C1—N1—C4118.00 (9)C8—C7—H7A119.0
C1—N1—Cu1107.29 (6)C7—C8—C9118.61 (9)
C4—N1—Cu1134.12 (7)C7—C8—H8A120.7
C3—N2—C2116.72 (9)C9—C8—H8A120.7
C7—N3—C11119.40 (8)C10—C9—C8119.48 (9)
C7—N3—Cu1125.73 (6)C10—C9—H9A120.3
C11—N3—Cu1114.69 (6)C8—C9—H9A120.3
N1—C1—C2120.85 (8)C9—C10—C11118.84 (9)
N1—C1—C5117.05 (8)C9—C10—H10A120.6
C2—C1—C5122.07 (8)C11—C10—H10A120.6
N2—C2—C1121.62 (9)N3—C11—C10121.57 (8)
N2—C2—C6113.75 (8)N3—C11—C11i114.75 (5)
C1—C2—C6124.57 (8)C10—C11—C11i123.67 (5)
N2—C3—C4122.22 (9)H5A—O5—H5B104.5
N2—C3—H3A118.9
O1i—Cu1—O1—C5−96.65 (7)C3—N2—C2—C6177.66 (9)
N3i—Cu1—O1—C526.65 (17)N1—C1—C2—N20.90 (14)
N3—Cu1—O1—C594.33 (7)C5—C1—C2—N2−177.34 (9)
N1i—Cu1—O1—C5−172.96 (7)N1—C1—C2—C6−175.91 (9)
N1—Cu1—O1—C5−5.49 (7)C5—C1—C2—C65.84 (14)
O1—Cu1—N1—C18.79 (6)C2—N2—C3—C4−1.13 (15)
O1i—Cu1—N1—C1101.46 (6)C1—N1—C4—C31.09 (14)
N3i—Cu1—N1—C1−164.26 (6)Cu1—N1—C4—C3−168.92 (7)
N3—Cu1—N1—C1−82.99 (6)N2—C3—C4—N10.34 (16)
N1i—Cu1—N1—C155.98 (14)Cu1—O1—C5—O2−179.47 (8)
O1—Cu1—N1—C4179.57 (10)Cu1—O1—C5—C11.41 (11)
O1i—Cu1—N1—C4−87.76 (10)N1—C1—C5—O2−171.48 (9)
N3i—Cu1—N1—C46.52 (10)C2—C1—C5—O26.83 (14)
N3—Cu1—N1—C487.79 (10)N1—C1—C5—O17.71 (12)
N1i—Cu1—N1—C4−133.24 (9)C2—C1—C5—O1−173.98 (9)
O1—Cu1—N3—C715.90 (8)N2—C2—C6—O4−96.00 (11)
O1i—Cu1—N3—C7−107.29 (14)C1—C2—C6—O481.03 (13)
N3i—Cu1—N3—C7−176.39 (10)N2—C2—C6—O377.89 (11)
N1i—Cu1—N3—C7−76.14 (8)C1—C2—C6—O3−105.07 (11)
N1—Cu1—N3—C792.66 (8)C11—N3—C7—C80.14 (14)
O1—Cu1—N3—C11−169.01 (6)Cu1—N3—C7—C8175.02 (7)
O1i—Cu1—N3—C1167.81 (15)N3—C7—C8—C90.79 (15)
N3i—Cu1—N3—C11−1.30 (5)C7—C8—C9—C10−0.57 (15)
N1i—Cu1—N3—C1198.96 (6)C8—C9—C10—C11−0.53 (15)
N1—Cu1—N3—C11−92.25 (7)C7—N3—C11—C10−1.31 (13)
C4—N1—C1—C2−1.68 (14)Cu1—N3—C11—C10−176.74 (7)
Cu1—N1—C1—C2170.83 (7)C7—N3—C11—C11i178.90 (9)
C4—N1—C1—C5176.65 (8)Cu1—N3—C11—C11i3.47 (12)
Cu1—N1—C1—C5−10.84 (9)C9—C10—C11—N31.50 (14)
C3—N2—C2—C10.53 (14)C9—C10—C11—C11i−178.73 (10)
D—H···AD—HH···AD···AD—H···A
O3—H3O···O5ii0.881.662.5390 (12)170
O5—H5A···O10.841.892.7218 (13)173
O5—H5B···O4iii0.861.842.6989 (13)177
C7—H7A···O2iii0.952.573.1144 (14)117
C8—H8A···O2iii0.952.453.0433 (13)121
C9—H9A···O5iv0.952.553.2168 (13)127
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3O⋯O5i0.881.662.5390 (12)170
O5—H5A⋯O10.841.892.7218 (13)173
O5—H5B⋯O4ii0.861.842.6989 (13)177
C7—H7A⋯O2ii0.952.573.1144 (14)117
C8—H8A⋯O2ii0.952.453.0433 (13)121
C9—H9A⋯O5iii0.952.553.2168 (13)127

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  Lone pair-aromatic interactions: to stabilize or not to stabilize.

Authors:  Martin Egli; Sanjay Sarkhel
Journal:  Acc Chem Res       Date:  2007-03       Impact factor: 22.384

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Poly[diaqua(μ(2)-3-carboxypyrazine-2-carboxylato)(μ(2)-pyrazine-2,3-dicarboxylic acid)potassium(I)].

Authors:  Mustafa Tombul; Kutalmis Güven; Ingrid Svoboda
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2007-12-15
  3 in total

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