| Literature DB >> 21203048 |
Hossein Aghabozorg, Mahdieh Parvizi, Elahe Sadrkhanlou.
Abstract
The title six-coordinated distorted octa-hedral complex, [Cu(C(6)H(3)N(2)O(4))(2)(C(10)H(8)N(2))]·2H(2)O, consists of two 3-carboxy-pyrazine-2-carboxyl-ate anions and one 2,2'-bipyridine ligand. There is a twofold rotation axis positioned at the Cu(II) center. The N atoms of the pyrazine ring occupy the axial positions and two proton-transferred O atoms of tbe acid together with the two N atoms of the 2,2'-bipyridine ligand complete the equatorial plane. The inter-actions existing in the crystal structure are inter-molecular O-H⋯O hydrogen bonds, and C-H⋯O and C-O⋯π inter-actions (O⋯π =3.145 Å, C-O⋯π = 149.75°).Entities:
Year: 2008 PMID: 21203048 PMCID: PMC2961978 DOI: 10.1107/S1600536808022885
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Cu(C6H3N2O4)2(C10H8N2)]·2H2O | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 9557 reflections |
| θ = 2.6–30.5º | |
| µ = 1.01 mm−1 | |
| β = 122.480 (5)º | Prism, colourless |
| 0.20 × 0.20 × 0.20 mm | |
| Bruker SMART APEXII diffractometer | 3500 independent reflections |
| Radiation source: fine-focus sealed tube | 3289 reflections with |
| Monochromator: graphite | |
| θmax = 30.5º | |
| φ and ω scans | θmin = 2.6º |
| Absorption correction: multi-scan(SADABS; Sheldrick, 1996) | |
| 14982 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H-atom parameters constrained | |
| | |
| (Δ/σ)max = 0.001 | |
| 3500 reflections | Δρmax = 0.49 e Å−3 |
| 177 parameters | Δρmin = −0.31 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cu1 | 1.0000 | 0.367362 (16) | 0.2500 | 0.01104 (5) | |
| O1 | 0.91326 (4) | 0.21893 (8) | 0.16501 (5) | 0.01386 (13) | |
| O2 | 0.85176 (5) | 0.08782 (9) | 0.02861 (6) | 0.02271 (16) | |
| O3 | 0.90660 (5) | 0.00760 (8) | −0.12364 (6) | 0.02014 (15) | |
| H3O | 0.8658 | −0.0282 | −0.1804 | 0.024* | |
| O4 | 0.81385 (5) | 0.19258 (9) | −0.16881 (6) | 0.02211 (16) | |
| N1 | 1.02854 (5) | 0.32913 (9) | 0.12702 (6) | 0.01404 (15) | |
| N2 | 1.01283 (6) | 0.27792 (10) | −0.05007 (6) | 0.01888 (17) | |
| N3 | 0.91587 (5) | 0.53313 (8) | 0.19274 (6) | 0.01230 (14) | |
| C1 | 0.96492 (6) | 0.24626 (10) | 0.05929 (7) | 0.01255 (15) | |
| C2 | 0.95681 (6) | 0.22146 (10) | −0.02994 (7) | 0.01416 (16) | |
| C3 | 1.07722 (7) | 0.35806 (12) | 0.01940 (8) | 0.01958 (19) | |
| H3A | 1.1187 | 0.3983 | 0.0079 | 0.023* | |
| C4 | 1.08554 (7) | 0.38463 (11) | 0.10811 (8) | 0.01748 (18) | |
| H4A | 1.1321 | 0.4426 | 0.1556 | 0.021* | |
| C5 | 0.90413 (6) | 0.17769 (10) | 0.08456 (7) | 0.01334 (16) | |
| C6 | 0.88379 (7) | 0.13731 (10) | −0.11323 (7) | 0.01512 (17) | |
| C7 | 0.82914 (6) | 0.52122 (10) | 0.13793 (7) | 0.01459 (16) | |
| H7A | 0.8039 | 0.4274 | 0.1197 | 0.018* | |
| C8 | 0.77532 (6) | 0.64164 (10) | 0.10722 (7) | 0.01620 (18) | |
| H8A | 0.7142 | 0.6307 | 0.0692 | 0.019* | |
| C9 | 0.81274 (6) | 0.77869 (11) | 0.13324 (7) | 0.01659 (17) | |
| H9A | 0.7773 | 0.8630 | 0.1126 | 0.020* | |
| C10 | 0.90229 (6) | 0.79146 (10) | 0.18959 (7) | 0.01464 (17) | |
| H10A | 0.9289 | 0.8843 | 0.2076 | 0.018* | |
| C11 | 0.95228 (5) | 0.66600 (10) | 0.21923 (6) | 0.01133 (15) | |
| O5 | 0.80282 (5) | 0.09628 (8) | 0.20844 (6) | 0.01843 (14) | |
| H5A | 0.8335 | 0.1329 | 0.1897 | 0.022* | |
| H5B | 0.7644 | 0.1614 | 0.1957 | 0.022* |
| Cu1 | 0.01075 (8) | 0.00986 (8) | 0.01153 (8) | 0.000 | 0.00533 (6) | 0.000 |
| O1 | 0.0162 (3) | 0.0146 (3) | 0.0136 (3) | −0.0032 (2) | 0.0099 (3) | −0.0027 (2) |
| O2 | 0.0255 (4) | 0.0255 (4) | 0.0199 (4) | −0.0116 (3) | 0.0140 (3) | −0.0098 (3) |
| O3 | 0.0209 (3) | 0.0171 (3) | 0.0184 (3) | 0.0053 (3) | 0.0079 (3) | −0.0022 (3) |
| O4 | 0.0193 (3) | 0.0250 (4) | 0.0179 (3) | 0.0082 (3) | 0.0072 (3) | −0.0017 (3) |
| N1 | 0.0152 (3) | 0.0137 (3) | 0.0149 (4) | 0.0000 (3) | 0.0092 (3) | 0.0009 (3) |
| N2 | 0.0181 (4) | 0.0255 (4) | 0.0168 (4) | 0.0038 (3) | 0.0118 (3) | 0.0035 (3) |
| N3 | 0.0119 (3) | 0.0124 (3) | 0.0118 (3) | 0.0001 (3) | 0.0058 (3) | 0.0001 (3) |
| C1 | 0.0141 (4) | 0.0121 (4) | 0.0132 (4) | 0.0018 (3) | 0.0085 (3) | 0.0013 (3) |
| C2 | 0.0149 (4) | 0.0154 (4) | 0.0132 (4) | 0.0040 (3) | 0.0082 (3) | 0.0019 (3) |
| C3 | 0.0171 (4) | 0.0257 (5) | 0.0204 (5) | 0.0016 (3) | 0.0131 (4) | 0.0045 (4) |
| C4 | 0.0156 (4) | 0.0196 (4) | 0.0184 (4) | −0.0010 (3) | 0.0099 (4) | 0.0018 (3) |
| C5 | 0.0146 (4) | 0.0134 (4) | 0.0133 (4) | −0.0003 (3) | 0.0083 (3) | −0.0002 (3) |
| C6 | 0.0178 (4) | 0.0169 (4) | 0.0133 (4) | 0.0035 (3) | 0.0101 (4) | 0.0005 (3) |
| C7 | 0.0122 (4) | 0.0142 (4) | 0.0154 (4) | −0.0007 (3) | 0.0060 (3) | −0.0004 (3) |
| C8 | 0.0120 (4) | 0.0171 (4) | 0.0162 (4) | 0.0008 (3) | 0.0054 (3) | −0.0010 (3) |
| C9 | 0.0138 (4) | 0.0149 (4) | 0.0171 (4) | 0.0027 (3) | 0.0057 (3) | −0.0008 (3) |
| C10 | 0.0144 (4) | 0.0122 (4) | 0.0153 (4) | 0.0006 (3) | 0.0067 (3) | −0.0010 (3) |
| C11 | 0.0114 (4) | 0.0126 (4) | 0.0100 (4) | 0.0000 (3) | 0.0057 (3) | 0.0003 (3) |
| O5 | 0.0213 (3) | 0.0156 (3) | 0.0244 (4) | 0.0041 (3) | 0.0163 (3) | 0.0056 (3) |
| Cu1—O1 | 1.9880 (7) | C2—C6 | 1.5117 (14) |
| Cu1—N3 | 2.0085 (8) | C3—C4 | 1.3940 (15) |
| Cu1—N1 | 2.3565 (8) | C3—H3A | 0.9500 |
| O1—C5 | 1.2890 (11) | C4—H4A | 0.9500 |
| O2—C5 | 1.2243 (12) | C7—C8 | 1.3869 (13) |
| O3—C6 | 1.3072 (12) | C7—H7A | 0.9500 |
| O3—H3O | 0.8844 | C8—C9 | 1.3903 (13) |
| O4—C6 | 1.2142 (12) | C8—H8A | 0.9500 |
| N1—C1 | 1.3340 (12) | C9—C10 | 1.3886 (13) |
| N1—C4 | 1.3386 (12) | C9—H9A | 0.9500 |
| N2—C3 | 1.3362 (15) | C10—C11 | 1.3904 (13) |
| N2—C2 | 1.3388 (12) | C10—H10A | 0.9500 |
| N3—C7 | 1.3446 (11) | C11—C11i | 1.4754 (17) |
| N3—C11 | 1.3496 (12) | O5—H5A | 0.8419 |
| C1—C2 | 1.4012 (13) | O5—H5B | 0.8612 |
| C1—C5 | 1.5169 (12) | ||
| O1—Cu1—O1i | 93.03 (4) | C4—C3—H3A | 118.9 |
| O1—Cu1—N3i | 166.86 (3) | N1—C4—C3 | 120.57 (10) |
| O1—Cu1—N3 | 94.19 (3) | N1—C4—H4A | 119.7 |
| O1i—Cu1—N3 | 166.86 (3) | C3—C4—H4A | 119.7 |
| N3i—Cu1—N3 | 80.95 (4) | O2—C5—O1 | 125.49 (9) |
| O1—Cu1—N1i | 91.84 (3) | O2—C5—C1 | 118.30 (8) |
| N3—Cu1—N1i | 92.57 (3) | O1—C5—C1 | 116.20 (8) |
| O1—Cu1—N1 | 76.24 (3) | O4—C6—O3 | 124.67 (10) |
| N3—Cu1—N1 | 100.53 (3) | O4—C6—C2 | 121.68 (9) |
| N1i—Cu1—N1 | 162.80 (4) | O3—C6—C2 | 113.34 (8) |
| C5—O1—Cu1 | 122.13 (6) | N3—C7—C8 | 122.08 (9) |
| C6—O3—H3O | 109.2 | N3—C7—H7A | 119.0 |
| C1—N1—C4 | 118.00 (9) | C8—C7—H7A | 119.0 |
| C1—N1—Cu1 | 107.29 (6) | C7—C8—C9 | 118.61 (9) |
| C4—N1—Cu1 | 134.12 (7) | C7—C8—H8A | 120.7 |
| C3—N2—C2 | 116.72 (9) | C9—C8—H8A | 120.7 |
| C7—N3—C11 | 119.40 (8) | C10—C9—C8 | 119.48 (9) |
| C7—N3—Cu1 | 125.73 (6) | C10—C9—H9A | 120.3 |
| C11—N3—Cu1 | 114.69 (6) | C8—C9—H9A | 120.3 |
| N1—C1—C2 | 120.85 (8) | C9—C10—C11 | 118.84 (9) |
| N1—C1—C5 | 117.05 (8) | C9—C10—H10A | 120.6 |
| C2—C1—C5 | 122.07 (8) | C11—C10—H10A | 120.6 |
| N2—C2—C1 | 121.62 (9) | N3—C11—C10 | 121.57 (8) |
| N2—C2—C6 | 113.75 (8) | N3—C11—C11i | 114.75 (5) |
| C1—C2—C6 | 124.57 (8) | C10—C11—C11i | 123.67 (5) |
| N2—C3—C4 | 122.22 (9) | H5A—O5—H5B | 104.5 |
| N2—C3—H3A | 118.9 | ||
| O1i—Cu1—O1—C5 | −96.65 (7) | C3—N2—C2—C6 | 177.66 (9) |
| N3i—Cu1—O1—C5 | 26.65 (17) | N1—C1—C2—N2 | 0.90 (14) |
| N3—Cu1—O1—C5 | 94.33 (7) | C5—C1—C2—N2 | −177.34 (9) |
| N1i—Cu1—O1—C5 | −172.96 (7) | N1—C1—C2—C6 | −175.91 (9) |
| N1—Cu1—O1—C5 | −5.49 (7) | C5—C1—C2—C6 | 5.84 (14) |
| O1—Cu1—N1—C1 | 8.79 (6) | C2—N2—C3—C4 | −1.13 (15) |
| O1i—Cu1—N1—C1 | 101.46 (6) | C1—N1—C4—C3 | 1.09 (14) |
| N3i—Cu1—N1—C1 | −164.26 (6) | Cu1—N1—C4—C3 | −168.92 (7) |
| N3—Cu1—N1—C1 | −82.99 (6) | N2—C3—C4—N1 | 0.34 (16) |
| N1i—Cu1—N1—C1 | 55.98 (14) | Cu1—O1—C5—O2 | −179.47 (8) |
| O1—Cu1—N1—C4 | 179.57 (10) | Cu1—O1—C5—C1 | 1.41 (11) |
| O1i—Cu1—N1—C4 | −87.76 (10) | N1—C1—C5—O2 | −171.48 (9) |
| N3i—Cu1—N1—C4 | 6.52 (10) | C2—C1—C5—O2 | 6.83 (14) |
| N3—Cu1—N1—C4 | 87.79 (10) | N1—C1—C5—O1 | 7.71 (12) |
| N1i—Cu1—N1—C4 | −133.24 (9) | C2—C1—C5—O1 | −173.98 (9) |
| O1—Cu1—N3—C7 | 15.90 (8) | N2—C2—C6—O4 | −96.00 (11) |
| O1i—Cu1—N3—C7 | −107.29 (14) | C1—C2—C6—O4 | 81.03 (13) |
| N3i—Cu1—N3—C7 | −176.39 (10) | N2—C2—C6—O3 | 77.89 (11) |
| N1i—Cu1—N3—C7 | −76.14 (8) | C1—C2—C6—O3 | −105.07 (11) |
| N1—Cu1—N3—C7 | 92.66 (8) | C11—N3—C7—C8 | 0.14 (14) |
| O1—Cu1—N3—C11 | −169.01 (6) | Cu1—N3—C7—C8 | 175.02 (7) |
| O1i—Cu1—N3—C11 | 67.81 (15) | N3—C7—C8—C9 | 0.79 (15) |
| N3i—Cu1—N3—C11 | −1.30 (5) | C7—C8—C9—C10 | −0.57 (15) |
| N1i—Cu1—N3—C11 | 98.96 (6) | C8—C9—C10—C11 | −0.53 (15) |
| N1—Cu1—N3—C11 | −92.25 (7) | C7—N3—C11—C10 | −1.31 (13) |
| C4—N1—C1—C2 | −1.68 (14) | Cu1—N3—C11—C10 | −176.74 (7) |
| Cu1—N1—C1—C2 | 170.83 (7) | C7—N3—C11—C11i | 178.90 (9) |
| C4—N1—C1—C5 | 176.65 (8) | Cu1—N3—C11—C11i | 3.47 (12) |
| Cu1—N1—C1—C5 | −10.84 (9) | C9—C10—C11—N3 | 1.50 (14) |
| C3—N2—C2—C1 | 0.53 (14) | C9—C10—C11—C11i | −178.73 (10) |
| H··· | ||||
| O3—H3O···O5ii | 0.88 | 1.66 | 2.5390 (12) | 170 |
| O5—H5A···O1 | 0.84 | 1.89 | 2.7218 (13) | 173 |
| O5—H5B···O4iii | 0.86 | 1.84 | 2.6989 (13) | 177 |
| C7—H7A···O2iii | 0.95 | 2.57 | 3.1144 (14) | 117 |
| C8—H8A···O2iii | 0.95 | 2.45 | 3.0433 (13) | 121 |
| C9—H9A···O5iv | 0.95 | 2.55 | 3.2168 (13) | 127 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O3—H3O⋯O5i | 0.88 | 1.66 | 2.5390 (12) | 170 |
| O5—H5 | 0.84 | 1.89 | 2.7218 (13) | 173 |
| O5—H5 | 0.86 | 1.84 | 2.6989 (13) | 177 |
| C7—H7 | 0.95 | 2.57 | 3.1144 (14) | 117 |
| C8—H8 | 0.95 | 2.45 | 3.0433 (13) | 121 |
| C9—H9 | 0.95 | 2.55 | 3.2168 (13) | 127 |
Symmetry codes: (i) ; (ii) ; (iii) .