Literature DB >> 27151396

Answering evolutionary questions: A guide for mechanistic biologists.

Joanna Masel1, Daniel E L Promislow2.   

Abstract

The questions and methods of molecular biology and evolutionary biology are clearly distinct, yet a unified approach can lead to deep insights. Unfortunately, attempts to unify these approaches are fraught with pitfalls. In this informal series of questions and answers, we offer the mechanistically oriented biologist a set of steps to come up with evolutionarily reasonable and meaningful hypotheses. We emphasize the critical power and importance of carefully constructed null hypotheses, and we illustrate our ideas with examples representing a range of topics, from the biology of aging, to protein structure, to speciation, and more. We also stress the importance of mathematics as the lingua franca for biologists of all stripes, and encourage mechanistic biologists to seek out quantitative collaborators to build explicit mathematical models, making their assumptions explicit, and their logic clear and testable. Biologists in all realms of inquiry stand to gain from strong bridges between our disciplines.
© 2016 WILEY Periodicals, Inc.

Entities:  

Keywords:  adaptation; aging; dominance; evolution; scientific method; spandrels

Mesh:

Substances:

Year:  2016        PMID: 27151396      PMCID: PMC4917405          DOI: 10.1002/bies.201600029

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  33 in total

Review 1.  Perspective: Evolution and detection of genetic robustness.

Authors:  J Arjan G M de Visser; Joachim Hermisson; Günter P Wagner; Lauren Ancel Meyers; Homayoun Bagheri-Chaichian; Jeffrey L Blanchard; Lin Chao; James M Cheverud; Santiago F Elena; Walter Fontana; Greg Gibson; Thomas F Hansen; David Krakauer; Richard C Lewontin; Charles Ofria; Sean H Rice; George von Dassow; Andreas Wagner; Michael C Whitlock
Journal:  Evolution       Date:  2003-09       Impact factor: 3.694

Review 2.  Unresolved boundaries of evolutionary theory and the question of how inheritance systems evolve: 75 years of debate on the evolution of dominance.

Authors:  Homayoun C Bagheri
Journal:  J Exp Zool B Mol Dev Evol       Date:  2006-07-15       Impact factor: 2.656

3.  Studies on Hybrid Sterility. II. Localization of Sterility Factors in Drosophila Pseudoobscura Hybrids.

Authors:  T Dobzhansky
Journal:  Genetics       Date:  1936-03       Impact factor: 4.562

4.  The frailty of adaptive hypotheses for the origins of organismal complexity.

Authors:  Michael Lynch
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-09       Impact factor: 11.205

5.  A diverse family of thermostable cytochrome P450s created by recombination of stabilizing fragments.

Authors:  Yougen Li; D Allan Drummond; Andrew M Sawayama; Christopher D Snow; Jesse D Bloom; Frances H Arnold
Journal:  Nat Biotechnol       Date:  2007-08-26       Impact factor: 54.908

6.  Senescence as an adaptation to limit the spread of disease.

Authors:  Josh Mitteldorf; John Pepper
Journal:  J Theor Biol       Date:  2009-05-28       Impact factor: 2.691

7.  Permissive secondary mutations enable the evolution of influenza oseltamivir resistance.

Authors:  Jesse D Bloom; Lizhi Ian Gong; David Baltimore
Journal:  Science       Date:  2010-06-04       Impact factor: 47.728

8.  ORFs and genes: how strong a connection?

Authors:  J W Fickett
Journal:  J Comput Biol       Date:  1995       Impact factor: 1.479

9.  The spandrels of San Marco and the Panglossian paradigm: a critique of the adaptationist programme.

Authors:  S J Gould; R C Lewontin
Journal:  Proc R Soc Lond B Biol Sci       Date:  1979-09-21

10.  Not just a theory--the utility of mathematical models in evolutionary biology.

Authors:  Maria R Servedio; Yaniv Brandvain; Sumit Dhole; Courtney L Fitzpatrick; Emma E Goldberg; Caitlin A Stern; Jeremy Van Cleve; D Justin Yeh
Journal:  PLoS Biol       Date:  2014-12-09       Impact factor: 8.029

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  2 in total

1.  Feed-forward regulation adaptively evolves via dynamics rather than topology when there is intrinsic noise.

Authors:  Kun Xiong; Alex K Lancaster; Mark L Siegal; Joanna Masel
Journal:  Nat Commun       Date:  2019-06-03       Impact factor: 14.919

Review 2.  Evolution, Chance, and Aging.

Authors:  Stewart Frankel; Blanka Rogina
Journal:  Front Genet       Date:  2021-09-09       Impact factor: 4.599

  2 in total

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