Literature DB >> 21198121

From simple to complex patterns of oscillatory behavior in a model for the mammalian cell cycle containing multiple oscillatory circuits.

Claude Gérard1, Albert Goldbeter.   

Abstract

We previously proposed an integrated computational model for the network of cyclin-dependent kinases (Cdks) that controls the dynamics of the mammalian cell cycle [C. Gérard and A. Goldbeter, "Temporal self-organization of the cyclin/Cdk network driving the mammalian cell cycle," Proc. Natl. Acad. Sci. U.S.A. 106, 21643 (2009)]. The model contains four Cdk modules regulated by reversible phosphorylation, Cdk inhibitors, protein synthesis or degradation, and the balance between antagonistic effects of the tumor suppressor pRB and the transcription factor E2F. Increasing the level of a growth factor above a critical threshold triggers the transition from a quiescent, stable steady state to self-sustained oscillations in the Cdk network. These oscillations correspond to the repetitive, transient activation of cyclin D/Cdk4-6 in G1, cyclin E/Cdk2 at the G1/S transition, cyclin A/Cdk2 in S and at the S/G2 transition, and cyclin B/Cdk1 at the G2/M transition. This periodic, ordered activation of the various cyclin/Cdk complexes can be associated with cell proliferation. The multiplicity of feedback loops within the Cdk network is such that it contains at least four distinct circuits capable of producing oscillations. The tight coupling of these oscillatory circuits generally results in simple periodic behavior associated with repetitive cycles of mitosis or with endoreplication. The latter corresponds to multiple passages through the phase of DNA replication without mitosis. We show here that, as a result of the interaction between the multiple oscillatory circuits, particularly when attenuating the strength of the oscillatory module involving cyclin B/Cdk1, the model for the Cdk network can also produce complex periodic oscillations, quasiperiodic oscillations, and chaos. Numerical simulations based on limited explorations in parameter space nevertheless suggest that these complex modes of oscillatory behavior remain less common than the evolution to simple periodic oscillations of the limit cycle type, holding with the view that simple periodic oscillations in the Cdk network correspond to its physiological mode of dynamic behavior.
© 2010 American Institute of Physics.

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Year:  2010        PMID: 21198121     DOI: 10.1063/1.3527998

Source DB:  PubMed          Journal:  Chaos        ISSN: 1054-1500            Impact factor:   3.642


  10 in total

1.  A skeleton model for the network of cyclin-dependent kinases driving the mammalian cell cycle.

Authors:  Claude Gérard; Albert Goldbeter
Journal:  Interface Focus       Date:  2010-12-01       Impact factor: 3.906

Review 2.  Dissipative structures in biological systems: bistability, oscillations, spatial patterns and waves.

Authors:  Albert Goldbeter
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2018-07-28       Impact factor: 4.226

3.  Landscape and flux reveal a new global view and physical quantification of mammalian cell cycle.

Authors:  Chunhe Li; Jin Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-16       Impact factor: 11.205

Review 4.  Multi-synchronization and other patterns of multi-rhythmicity in oscillatory biological systems.

Authors:  Albert Goldbeter; Jie Yan
Journal:  Interface Focus       Date:  2022-04-15       Impact factor: 4.661

5.  A quantitative model of the initiation of DNA replication in Saccharomyces cerevisiae predicts the effects of system perturbations.

Authors:  Rohan D Gidvani; Peter Sudmant; Grace Li; Lance F DaSilva; Brendan J McConkey; Bernard P Duncker; Brian P Ingalls
Journal:  BMC Syst Biol       Date:  2012-06-27

6.  Entrainment of the mammalian cell cycle by the circadian clock: modeling two coupled cellular rhythms.

Authors:  Claude Gérard; Albert Goldbeter
Journal:  PLoS Comput Biol       Date:  2012-05-31       Impact factor: 4.475

Review 7.  Cyclin/Forkhead-mediated coordination of cyclin waves: an autonomous oscillator rationalizing the quantitative model of Cdk control for budding yeast.

Authors:  Matteo Barberis
Journal:  NPJ Syst Biol Appl       Date:  2021-12-13

8.  From quiescence to proliferation: Cdk oscillations drive the mammalian cell cycle.

Authors:  Claude Gérard; Albert Goldbeter
Journal:  Front Physiol       Date:  2012-11-02       Impact factor: 4.566

9.  MicroRNA-mediated regulation in biological systems with oscillatory behavior.

Authors:  Zhiyong Zhang; Fengdan Xu; Zengrong Liu; Ruiqi Wang; Tieqiao Wen
Journal:  Biomed Res Int       Date:  2013-06-26       Impact factor: 3.411

10.  Chaos and Hyperchaos in a Model of Ribosome Autocatalytic Synthesis.

Authors:  Vitaly A Likhoshvai; Vladislav V Kogai; Stanislav I Fadeev; Tamara M Khlebodarova
Journal:  Sci Rep       Date:  2016-12-12       Impact factor: 4.379

  10 in total

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