| Literature DB >> 21176155 |
Pengyi Shi1, Pinar Keskinocak, Julie L Swann, Bruce Y Lee.
Abstract
BACKGROUND: During the 2009 H1N1 influenza pandemic, concerns arose about the potential negative effects of mass public gatherings and travel on the course of the pandemic. Better understanding the potential effects of temporal changes in social mixing patterns could help public officials determine if and when to cancel large public gatherings or enforce regional travel restrictions, advisories, or surveillance during an epidemic.Entities:
Mesh:
Year: 2010 PMID: 21176155 PMCID: PMC3022852 DOI: 10.1186/1471-2458-10-778
Source DB: PubMed Journal: BMC Public Health ISSN: 1471-2458 Impact factor: 3.295
Key Model Parameters
| Parameter | Description | Baseline Values | Reference |
|---|---|---|---|
| pA | Probability of infected individual remaining asymptomatic throughout course of infection | 0.4 for working adults, 0.25 for others | [ |
| pH | Probability of symptomatic individual requiring hospitalization | 0.18 for ages 0-5, 0.06 for ages 6-64, 0.12 for ages 65+ | [ |
| pD | Probability of hospitalized individual not surviving | 0.344 for ages 0-5, 0.172 for ages 6+ | [ |
| Duration of E+ IP | Duration of exposed and presymptomatic stages | Weibull distribution with mean 1.48 and standard deviation 0.47, and offset 0.5 | [ |
| Duration of IP | Duration of presymptomatic stage | 0.5 (constant) | [ |
| Duration of IS | Duration of symptomatic stage | Exponential distribution with mean 2.7313 (mean = 7 in the sensitivity analysis) | [ |
| Duration of IA | Duration of asymptomatic stage | Exponential distribution with mean 1.63878 (mean = 7 in the sensitivity analysis) | [ |
| Duration of IH | Duration of hospitalization | Exponential distribution with mean 14 | [ |
| Household Size | Number of individuals in each household | 1 person: 10.33%; 2 persons 23.55%; 3 persons: 20.45%; 4 persons: 23.00%; | [ |
| School Classroom Size | Number of individuals in each classroom | Uniform distribution (9,19) for ages 0-5; uniform distribution (15,25) for ages 6-11; and uniform distribution (25,35) for ages 12-18 | [ |
| Workplace Size | Number of individuals in each workplace | Poisson distribution with mean 20 (maximum 1000) | [ |
| Community Size | Number of people in each census tract (1615 census tracts in the state of Georgia) | Maximum = 29341, minimum = 218 | [ |
| p% | Proportion of the population that attends mass gatherings or travels during the experiments | 1%, 5%, 10%, and 25% for the non-Holiday scenarios; 25% and 50% for the Holiday scenarios | [ |
| Initial R0 | Reproductive rate (average number of secondary cases generated by each infected individual) for each experiment before social mixing changes are introduced | 1.3, 1.5, and 1.8 | [ |
| Resulting R0 | Reproductive rate (average number of secondary cases generated by each infected individual) for each experiment after social mixing changes are introduced | See Tables 2-4 | |
| θ | Proportion of transmissions that occur at presymptomatic/asymptomatic stage | 0.3 | [ |
| ω | Proportion of infections generated by individuals who are asymptomatic | 0.15 | [ |
| γ | Proportion of transmissions that occur outside the households | 0.7 | [ |
| δ | Proportion of transmissions outside the home that occur in the community | 0.5 | [ |
The table shows the explanations, values and sources for the key parameters we used in the simulation model.
Figure 1An example of the contact network. The figure shows an example of the contact network, i.e., how persons interact with each other in households, workplaces, schools, communities, and/or temporary mass gathering locations.
Results from Different Mass Gathering Scenarios (Initial R0 = 1.5)
| % population traveling ( | Traveling Period | Resulting R0 | Peak Prevalence | Peak Day | Total Attack Rate | |
|---|---|---|---|---|---|---|
| Day 30 | 0.5 | 1.50 | 2.73% | 70 | 51.0% | |
| Day 30 | 1 | 1.50 | 2.76% | 70 | 51.0% | |
| Day 30 | 2 | 1.50 | 2.78% | 71 | 51.0% | |
| Day 30 | 3 | 1.50 | 2.79% | 70 | 51.0% | |
| Day 60 | 0.5 | 1.50 | 2.74% | 70 | 51.0% | |
| Day 60 | 1 | 1.50 | 2.76% | 70 | 51.0% | |
| Day 60 | 2 | 1.50 | 2.74% | 70 | 51.0% | |
| Day 60 | 3 | 1.50 | 2.75% | 71 | 51.0% | |
| Day 30 | 0.5 | 1.50 | 2.74% | 69 | 51.0% | |
| Day 30 | 1 | 1.50 | 2.77% | 70 | 51.0% | |
| Day 30 | 2 | 1.50 | 2.77% | 70 | 51.0% | |
| Day 30 | 3 | 1.50 | 2.80% | 70 | 51.0% | |
| Day 60 | 0.5 | 1.50 | 2.74% | 69 | 51.0% | |
| Day 60 | 1 | 1.50 | 2.81% | 70 | 51.2% | |
| Day 60 | 2 | 1.51 | 2.83% | 70 | 51.2% | |
| Day 60 | 3 | 1.50 | 2.78% | 70 | 51.1% | |
| Day 30 | 0.5 | 1.50 | 2.74% | 69 | 51.0% | |
| Day 30 | 1 | 1.50 | 2.78% | 69 | 51.0% | |
| Day 30 | 2 | 1.50 | 2.80% | 69 | 51.0% | |
| Day 30 | 3 | 1.50 | 2.82% | 68 | 51.1% | |
| Day60 | 0.5 | 1.50 | 2.80% | 69 | 51.0% | |
| Day 60 | 1 | 1.51 | 2.85% | 70 | 51.3% | |
| Day 60 | 2 | 1.51 | 2.89% | 69 | 51.4% | |
| Day 60 | 3 | 1.50 | 2.80% | 70 | 51.1% | |
| Day 30 | 0.5 | 1.50 | 2.79% | 69 | 51.0% | |
| Day 30 | 1 | 1.50 | 2.80% | 68 | 51.1% | |
| Day 30 | 2 | 1.50 | 2.80% | 68 | 51.1% | |
| Day 30 | 3 | 1.50 | 2.83% | 70 | 51.0% | |
| Day 60 | 0.5 | 1.51 | 2.90% | 69 | 51.4% | |
| Day 60 | 1 | 1.52 | 3.04% | 69 | 51.7% | |
| Day 60 | 2 | 1.53 | 3.12% | 69 | 52.0% | |
| Day 60 | 3 | 1.51 | 2.96% | 71 | 51.4% | |
| Baseline | 1.50 | 2.73% | 70 | 51.0% | ||
The table shows the total attack rate (i.e., proportion of population that has ever been infected), the peak prevalence day and value in the non-Holiday scenarios, with several combinations of values for l (duration of the traveling/mass traveling period) and p (the proportion of the population traveling/gathering) when the initial R0 equals to 1.5. The resulting R0 values (after adding the traveling/mass gathering period) are obtained from the baseline scenarios (without traveling/gathering) to match the peak prevalence and the total attack rate showed in this table. The standard deviation is 0.04-0.09% for the peak prevalence and is 0.17-0.30% for the total attack rate.
Results from Different Mass Gathering Scenarios (Initial R0 = 1.3)
| % population traveling ( | Traveling Period | Resulting R0 | Peak Prevalence | Peak Day | Total Attack Rate | |
|---|---|---|---|---|---|---|
| Day 60 | 0.5 | 1.30 | 0.96% | 98 | 32.5% | |
| Day 60 | 1 | 1.30 | 0.97% | 99 | 32.5% | |
| Day 60 | 2 | 1.30 | 0.96% | 98 | 32.8% | |
| Day 60 | 3 | 1.30 | 0.98% | 98 | 32.9% | |
| Day 90 | 0.5 | 1.30 | 0.96% | 97 | 32.5% | |
| Day 90 | 1 | 1.30 | 0.97% | 98 | 32.6% | |
| Day 90 | 2 | 1.30 | 0.98% | 97 | 32.8% | |
| Day 90 | 3 | 1.30 | 0.98% | 97 | 32.8% | |
| Day 60 | 0.5 | 1.30 | 0.97% | 96 | 32.6% | |
| Day 60 | 1 | 1.30 | 0.98% | 97 | 32.6% | |
| Day 60 | 2 | 1.30 | 0.98% | 97 | 32.8% | |
| Day 60 | 3 | 1.30 | 1.00% | 96 | 32.9% | |
| Day 90 | 0.5 | 1.30 | 0.98% | 97 | 32.8% | |
| Day 90 | 1 | 1.30 | 0.98% | 96 | 32.7% | |
| Day 90 | 2 | 1.31 | 1.00% | 99 | 33.1% | |
| Day 90 | 3 | 1.30 | 0.97% | 101 | 32.7% | |
| Day 60 | 0.5 | 1.30 | 0.98% | 96 | 32.8% | |
| Day 60 | 1 | 1.30 | 0.98% | 96 | 32.7% | |
| Day 60 | 2 | 1.30 | 0.99% | 95 | 32.9% | |
| Day 60 | 3 | 1.30 | 1.01% | 97 | 32.9% | |
| Day 90 | 0.5 | 1.30 | 0.99% | 98 | 32.8% | |
| Day 90 | 1 | 1.31 | 1.00% | 97 | 33.1% | |
| Day 90 | 2 | 1.31 | 1.02% | 99 | 33.1% | |
| Day 90 | 3 | 1.30 | 0.98% | 99 | 32.8% | |
| Day 60 | 0.5 | 1.30 | 0.98% | 97 | 32.8% | |
| Day 60 | 1 | 1.30 | 1.00% | 97 | 32.7% | |
| Day 60 | 2 | 1.31 | 1.05% | 94 | 33.2% | |
| Day 60 | 3 | 1.30 | 1.03% | 99 | 32.7% | |
| Day 90 | 0.5 | 1.31 | 1.04% | 98 | 33.1% | |
| Day 90 | 1 | 1.31 | 1.07% | 99 | 33.3% | |
| Day 90 | 2 | 1.32 | 1.11% | 99 | 33.7% | |
| Day 90 | 3 | 1.31 | 1.02% | 99 | 33.0% | |
| Baseline | 1.30 | 0.96% | 94 | 32.4% | ||
The table shows the total attack rate (i.e., proportion of population that has ever been infected), the peak prevalence day and value in the non-Holiday scenarios, with several combinations of values for l (duration of the traveling/mass traveling period) and p (the proportion of the population traveling/gathering) when the initial R0 equals to 1.3. The resulting R0 values (after adding the traveling/mass gathering period) are obtained from the baseline scenarios (without traveling/gathering) to match the peak prevalence and the total attack rate showed in this table. The standard deviation is 0.02-0.05% for the peak prevalence and is 0.22-0.41% for the total attack rate.
Results from Different Mass Gathering Scenarios (Initial R0 = 1.8)
| % population traveling ( | Traveling Period | Resulting R0 | Peak Prevalence | Peak Day | Total Attack Rate | |
|---|---|---|---|---|---|---|
| Start | Duration | |||||
| Day 30 | 0.5 | 1.80 | 5.99% | 50 | 68.4% | |
| Day 30 | 1 | 1.80 | 5.99% | 51 | 68.4% | |
| Day 30 | 2 | 1.80 | 6.00% | 50 | 68.4% | |
| Day 30 | 3 | 1.80 | 6.00% | 50 | 68.4% | |
| Day 45 | 0.5 | 1.80 | 5.99% | 51 | 68.4% | |
| Day 45 | 1 | 1.80 | 6.00% | 51 | 68.4% | |
| Day 45 | 2 | 1.80 | 5.99% | 51 | 68.4% | |
| Day 45 | 3 | 1.80 | 5.96% | 51 | 68.4% | |
| Day 30 | 0.5 | 1.80 | 6.01% | 50 | 68.4% | |
| Day 30 | 1 | 1.80 | 6.01% | 50 | 68.4% | |
| Day 30 | 2 | 1.80 | 6.03% | 50 | 68.4% | |
| Day 30 | 3 | 1.80 | 6.10% | 51 | 68.4% | |
| Day 45 | 0.5 | 1.80 | 6.04% | 51 | 68.4% | |
| Day 45 | 1 | 1.80 | 6.05% | 50 | 68.6% | |
| Day 45 | 2 | 1.81 | 6.09% | 51 | 68.7% | |
| Day 45 | 3 | 1.80 | 5.94% | 51 | 68.4% | |
| Day 30 | 0.5 | 1.80 | 6.03% | 51 | 68.4% | |
| Day 30 | 1 | 1.80 | 6.08% | 50 | 68.4% | |
| Day 30 | 2 | 1.80 | 6.12% | 50 | 68.4% | |
| Day 30 | 3 | 1.80 | 6.17% | 51 | 68.4% | |
| Day 45 | 0.5 | 1.80 | 6.05% | 51 | 68.5% | |
| Day 45 | 1 | 1.81 | 6.20% | 50 | 68.6% | |
| Day 45 | 2 | 1.80 | 6.07% | 51 | 68.5% | |
| Day 45 | 3 | 1.80 | 5.99% | 51 | 68.4% | |
| Day 30 | 0.5 | 1.80 | 6.08% | 50 | 68.4% | |
| Day 30 | 1 | 1.81 | 6.16% | 50 | 68.5% | |
| Day 30 | 2 | 1.82 | 6.31% | 50 | 68.6% | |
| Day 30 | 3 | 1.82 | 6.40% | 50 | 68.5% | |
| Day 45 | 0.5 | 1.82 | 6.20% | 51 | 68.8% | |
| Day 45 | 1 | 1.83 | 6.49% | 50 | 69.3% | |
| Day 45 | 2 | 1.83 | 6.58% | 51 | 69.5% | |
| Day 45 | 3 | 1.82 | 6.21% | 53 | 68.6% | |
| Baseline | 1.80 | 5.99% | 50 | 68.4% | ||
The table shows the total attack rate (i.e., proportion of population that has ever been infected), the peak prevalence day and value in the non-Holiday scenarios, with several combinations of values for l (duration of the traveling/mass traveling period) and p (the proportion of the population traveling/gathering) when the initial R0 equals to 1.8. The resulting R0 values (after adding the traveling/mass gathering period) are obtained from the baseline scenarios (without traveling/gathering) to match the peak prevalence and the total attack rate showed in this table. The standard deviation is 0.08-0.15% for the peak prevalence and is 0.07-0.18% for the total attack rate.
Figure 2Epidemic curves in the Holiday scenarios. The figure shows the daily prevalence of infection (i.e., proportion of the symptomatic and asymptomatic persons over the entire population) for the entire state of Georgia under the Holiday setting. Here 25% of the population travels during a 5-day traveling or mass gathering period with two initial R0 values: A) R0 = 1.5; B) R0 = 1.3.
Figure 3Epidemic curves in the Holiday and social distancing scenarios. The figure shows the daily prevalence of infection (i.e., proportion of the symptomatic and asymptomatic persons over the entire population) for the entire state of Georgia under the Holiday and the social distancing settings. Here the initial R0 = 1.5; 25% of the population travels during a 5-day period starting on Day 60 (solid curve), or reduces their peer group mixings ("social distancing") during the same period time (dotted curve).
Figure 4Peak prevalence value and peak day in Bibb County. The box plots show the range (with maximum and minimum, dotted line), 25% (lower gray line) and 75% (upper gray line) percentile, and the mean value (solid black line) for the peak prevalence (4A) and the peak day (4B) in Bibb County. Here 50% of the population from Bibb County and its nearest 5 counties travels and mixes with 9.5% of the population from other counties in the traveling group. The initial R0 = 1.5, the traveling period lasts for 1 day, and it starts on Day 30, 60, or no traveling (baseline).