Literature DB >> 21159547

Histone variants and modifications in plant gene regulation.

Roger B Deal1, Steven Henikoff.   

Abstract

Genomes are packaged by complexing DNA with histone proteins, which provides an opportunity to regulate gene expression by dynamically impeding access of transcriptional regulatory proteins and RNA polymerases to DNA. The incorporation of histone variants into nucleosomes and addition of post-translational modifications to histones can alter the physical properties of nucleosomes and thereby serve as a mechanism for regulating DNA exposure. Chromatin-based gene regulation has profound effects on developmental processes including regulation of the vegetative to reproductive transition, as well as responses to pathogens and abiotic factors. Incorporation of the histone variant H2A.Z and methylation of histone H3 lysine residues 4 and 27 have emerged as key elements in the regulation of genes involved in each of these processes.
Copyright © 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 21159547      PMCID: PMC3093162          DOI: 10.1016/j.pbi.2010.11.005

Source DB:  PubMed          Journal:  Curr Opin Plant Biol        ISSN: 1369-5266            Impact factor:   7.834


  63 in total

1.  Cell type-specific expression profiling in plants via cell sorting of protoplasts from fluorescent reporter lines.

Authors:  Kenneth Birnbaum; Jee W Jung; Jean Y Wang; Georgina M Lambert; John A Hirst; David W Galbraith; Philip N Benfey
Journal:  Nat Methods       Date:  2005-08       Impact factor: 28.547

Review 2.  The role of chromatin during transcription.

Authors:  Bing Li; Michael Carey; Jerry L Workman
Journal:  Cell       Date:  2007-02-23       Impact factor: 41.582

3.  Characterization of nucleosome core particles containing histone proteins made in bacteria.

Authors:  K Luger; T J Rechsteiner; A J Flaus; M M Waye; T J Richmond
Journal:  J Mol Biol       Date:  1997-09-26       Impact factor: 5.469

4.  Chromatin structure: a repeating unit of histones and DNA.

Authors:  R D Kornberg
Journal:  Science       Date:  1974-05-24       Impact factor: 47.728

Review 5.  Control of the transition to flowering by chromatin modifications.

Authors:  Yuehui He
Journal:  Mol Plant       Date:  2009-03-05       Impact factor: 13.164

Review 6.  Genome-wide views of chromatin structure.

Authors:  Oliver J Rando; Howard Y Chang
Journal:  Annu Rev Biochem       Date:  2009       Impact factor: 23.643

7.  Histone H3.1 and H3.3 complexes mediate nucleosome assembly pathways dependent or independent of DNA synthesis.

Authors:  Hideaki Tagami; Dominique Ray-Gallet; Geneviève Almouzni; Yoshihiro Nakatani
Journal:  Cell       Date:  2004-01-09       Impact factor: 41.582

8.  Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana.

Authors:  Xiaoyu Zhang; Yana V Bernatavichute; Shawn Cokus; Matteo Pellegrini; Steven E Jacobsen
Journal:  Genome Biol       Date:  2009-06-09       Impact factor: 13.583

9.  Resetting of FLOWERING LOCUS C expression after epigenetic repression by vernalization.

Authors:  Candice C Sheldon; Melissa J Hills; Clare Lister; Caroline Dean; Elizabeth S Dennis; W James Peacock
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-04       Impact factor: 11.205

10.  Repression of FLOWERING LOCUS T chromatin by functionally redundant histone H3 lysine 4 demethylases in Arabidopsis.

Authors:  Ju-Hee Jeong; Hae-Ryong Song; Jong-Hyun Ko; Young-Min Jeong; Young Eun Kwon; Jae Hong Seol; Richard M Amasino; Bosl Noh; Yoo-Sun Noh
Journal:  PLoS One       Date:  2009-11-25       Impact factor: 3.240

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  39 in total

1.  Genome-wide analysis of histone H3.1 and H3.3 variants in Arabidopsis thaliana.

Authors:  Hume Stroud; Sofía Otero; Bénédicte Desvoyes; Elena Ramírez-Parra; Steven E Jacobsen; Crisanto Gutierrez
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-19       Impact factor: 11.205

2.  Histone acetylation recruits the SWR1 complex to regulate active DNA demethylation in Arabidopsis.

Authors:  Wen-Feng Nie; Mingguang Lei; Mingxuan Zhang; Kai Tang; Huan Huang; Cuijun Zhang; Daisuke Miki; Pan Liu; Yu Yang; Xingang Wang; Heng Zhang; Zhaobo Lang; Na Liu; Xuechen Xu; Ramesh Yelagandula; Huiming Zhang; Zhidan Wang; Xiaoqiang Chai; Andrea Andreucci; Jing-Quan Yu; Frederic Berger; Rosa Lozano-Duran; Jian-Kang Zhu
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-30       Impact factor: 11.205

3.  Nuclear Transcriptomes at High Resolution Using Retooled INTACT.

Authors:  Mauricio A Reynoso; Germain C Pauluzzi; Kaisa Kajala; Sean Cabanlit; Joel Velasco; Jérémie Bazin; Roger Deal; Neelima R Sinha; Siobhan M Brady; Julia Bailey-Serres
Journal:  Plant Physiol       Date:  2017-09-27       Impact factor: 8.340

Review 4.  Epigenetic regulation in plants.

Authors:  Craig S Pikaard; Ortrun Mittelsten Scheid
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-12-01       Impact factor: 10.005

5.  Differential deposition of H2A.Z in rice seedling tissue during the day-night cycle.

Authors:  Kang Zhang; Wenying Xu; Chunchao Wang; Xin Yi; Zhen Su
Journal:  Plant Signal Behav       Date:  2017-03-04

6.  Plant chromatin warms up in Madrid: meeting summary of the 3rd European Workshop on Plant Chromatin 2013, Madrid, Spain.

Authors:  José A Jarillo; Valérie Gaudin; Lars Hennig; Claudia Köhler; Manuel Piñeiro
Journal:  Epigenetics       Date:  2014-02-06       Impact factor: 4.528

Review 7.  Epigenetics: Beyond Chromatin Modifications and Complex Genetic Regulation.

Authors:  Steven R Eichten; Robert J Schmitz; Nathan M Springer
Journal:  Plant Physiol       Date:  2014-05-28       Impact factor: 8.340

Review 8.  Chromatin regulation in plant hormone and plant stress responses.

Authors:  Likai Wang; Hong Qiao
Journal:  Curr Opin Plant Biol       Date:  2020-11-02       Impact factor: 7.834

9.  Archaeal transcription.

Authors:  Breanna R Wenck; Thomas J Santangelo
Journal:  Transcription       Date:  2020-10-28

10.  The Functional Topography of the Arabidopsis Genome Is Organized in a Reduced Number of Linear Motifs of Chromatin States.

Authors:  Joana Sequeira-Mendes; Irene Aragüez; Ramón Peiró; Raul Mendez-Giraldez; Xiaoyu Zhang; Steven E Jacobsen; Ugo Bastolla; Crisanto Gutierrez
Journal:  Plant Cell       Date:  2014-06-16       Impact factor: 11.277

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