Literature DB >> 21132381

Development of polymorphic microsatellite markers in barfin flounder (Verasper moseri) and spotted halibut (Verasper variegatus) by the cross-species amplification.

Hongyu Ma1, Songlin Chen.   

Abstract

Barfin flounder (Verasper moseri) and spotted halibut (Verasper variegatus) are two commercially important flatfish species in the Northeast Asia. In the present study, we reported polymorphic microsatellite markers in V. moseri and V. variegatus by the cross-species amplification of microsatellite primers developed previously in two other related marine fish species. A total of 244 polymorphic microsatellite markers were selected for cross-species amplification in V. moseri and V. variegatus, of which 182 markers deriving from Atlantic halibut (Hippoglossus hippoglossus) and 62 markers deriving from Japanese flounder (Paralichthys olivaceus). A sample of 10 individuals were detected. As a result, a total of 67 loci showed polymorphisms in V. moseri, and 62 loci showed polymorphisms in V. variegatus, with the observed number of alleles per locus ranging from two to five in V. moseri, and from two to seven in V. variegatus, respectively. This paper provided more candidate microsatellite markers which could be useful for construction of genetic linkage maps, evaluation of population genetic structure and stock management of V. moseri and V. variegatus.

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Year:  2010        PMID: 21132381     DOI: 10.1007/s11033-010-0585-1

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  15 in total

Review 1.  Strategies for microsatellite isolation: a review.

Authors:  L Zane; L Bargelloni; T Patarnello
Journal:  Mol Ecol       Date:  2002-01       Impact factor: 6.185

2.  Transferability and characterization of nine microsatellite markers for the tropical tree species Tabebuia roseo-alba.

Authors:  Juliana Massimino Feres; Marcelo L L Martinez; Carlos A Martinez; Moacyr A Mestriner; Ana Lilia Alzate-Marin
Journal:  Mol Ecol Resour       Date:  2009-01       Impact factor: 7.090

3.  Cross species amplification ability of novel microsatellites isolated from Jatropha curcas and genetic relationship with sister taxa: cross species amplification and genetic relationship of Jatropha using novel microsatellites.

Authors:  Pamidimarri D V N Sudheer; Shaik G Mastan; Hifzur Rahman; Ch Ravi Prakash; Sweta Singh; Muppala P Reddy
Journal:  Mol Biol Rep       Date:  2010-07-30       Impact factor: 2.316

4.  Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction.

Authors:  J L Weber; P E May
Journal:  Am J Hum Genet       Date:  1989-03       Impact factor: 11.025

5.  Polymorphic microsatellite markers for Atlantic halibut, Hippoglossus hippoglossus.

Authors:  C McGowan; M E Reith
Journal:  Mol Ecol       Date:  1999-10       Impact factor: 6.185

6.  Genetic variation and phylogenetic relationship between two species of yellow catfish, Horabagrus brachysoma and H. nigricollaris (Teleostei: Horabagridae) based on RAPD and microsatellite markers.

Authors:  P M Abdul Muneer; A Gopalakrishnan; Remya Shivanandan; V S Basheer; A G Ponniah
Journal:  Mol Biol Rep       Date:  2010-09-23       Impact factor: 2.316

7.  Isolation of novel microsatellites using FIASCO by dual probe enrichment from Jatropha curcas L. and study on genetic equilibrium and diversity of Indian population revealed by isolated microsatellites.

Authors:  Pamidimarri D V N Sudheer; Hifzur Rahman; Shaik G Mastan; Muppala P Reddy
Journal:  Mol Biol Rep       Date:  2010-03-11       Impact factor: 2.316

8.  Isolation and characterization of 11 microsatellite loci in Atlantic halibut (Hippoglossus hippoglossus L.).

Authors:  J Coughlan; M Stefansson; P Galvin; E Dillane; R Fitzgerald; T F Cross
Journal:  Mol Ecol       Date:  2000-06       Impact factor: 6.185

9.  A type I and type II microsatellite linkage map of rainbow trout (Oncorhynchus mykiss) with presumptive coverage of all chromosome arms.

Authors:  René Guyomard; Stéphane Mauger; Kamila Tabet-Canale; Sylvain Martineau; Carine Genet; Francine Krieg; Edwige Quillet
Journal:  BMC Genomics       Date:  2006-11-30       Impact factor: 3.969

10.  Comprehensive EST analysis of Atlantic halibut (Hippoglossus hippoglossus), a commercially relevant aquaculture species.

Authors:  Susan E Douglas; Leah C Knickle; Jennifer Kimball; Michael E Reith
Journal:  BMC Genomics       Date:  2007-06-04       Impact factor: 3.969

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  1 in total

1.  Analysis of genome survey sequences and SSR marker development for Siamese Mud Carp, Henicorhynchus siamensis, using 454 pyrosequencing.

Authors:  Feni Iranawati; Hyungtaek Jung; Vincent Chand; David A Hurwood; Peter B Mather
Journal:  Int J Mol Sci       Date:  2012-08-29       Impact factor: 6.208

  1 in total

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