Literature DB >> 11903900

Strategies for microsatellite isolation: a review.

L Zane1, L Bargelloni, T Patarnello.   

Abstract

In the last few years microsatellites have become one of the most popular molecular markers used with applications in many different fields. High polymorphism and the relative ease of scoring represent the two major features that make microsatellites of large interest for many genetic studies. The major drawback of microsatellites is that they need to be isolated de novo from species that are being examined for the first time. The aim of the present paper is to review the various methods of microsatellite isolation described in the literature with the purpose of providing useful guidelines in making appropriate choices among the large number of currently available options. In addition, we propose a fast and easy protocol which is a combination of different published methods.

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Year:  2002        PMID: 11903900     DOI: 10.1046/j.0962-1083.2001.01418.x

Source DB:  PubMed          Journal:  Mol Ecol        ISSN: 0962-1083            Impact factor:   6.185


  260 in total

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2.  Transcriptome analysis of the roots at early and late seedling stages using Illumina paired-end sequencing and development of EST-SSR markers in radish.

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Journal:  Plant Cell Rep       Date:  2012-04-04       Impact factor: 4.570

3.  QTL mapping for yield and lodging resistance in an enhanced SSR-based map for tef.

Authors:  M Zeid; G Belay; S Mulkey; J Poland; M E Sorrells
Journal:  Theor Appl Genet       Date:  2010-08-13       Impact factor: 5.699

4.  A rapid and cost-effective approach for the development of polymorphic microsatellites in non-model species using paired-end RAD sequencing.

Authors:  Dong-Xiu Xue; Yu-Long Li; Jin-Xian Liu
Journal:  Mol Genet Genomics       Date:  2017-06-20       Impact factor: 3.291

5.  A novel microsatellite locus isolated from an AFLP fragment in the mangrove species Kandelia obovata (Rhizophoraceae).

Authors:  Ko Harada; Takatomi Okaura; Le Huong Giang; Nguyen Van Huan; Mayumi Iwasaki; Eiji Nitasaka
Journal:  J Plant Res       Date:  2005-01-18       Impact factor: 2.629

6.  Identification of microsatellite markers from Cicer reticulatum: molecular variation and phylogenetic analysis.

Authors:  Niroj Kumar Sethy; Shalu Choudhary; Bhumika Shokeen; Sabhyata Bhatia
Journal:  Theor Appl Genet       Date:  2005-11-19       Impact factor: 5.699

7.  A polymerase chain reaction screening method for rapid detection of microsatellites in bacterial artificial chromosomes.

Authors:  M F Rodriguez; S A Gahr; C E Rexroad; Y Palti
Journal:  Mar Biotechnol (NY)       Date:  2006-05-25       Impact factor: 3.619

8.  Evaluation of DNA pooling for the estimation of microsatellite allele frequencies: a case study using striped bass (Morone saxatilis).

Authors:  Garrick T Skalski; Charlene R Couch; Amber F Garber; Bruce S Weir; Craig V Sullivan
Journal:  Genetics       Date:  2006-04-02       Impact factor: 4.562

9.  Cloning and characterization of microsatellite loci in a gorgonian coral, Junceella juncea (Anthozoa; Octocorallia; Ellisellidae) and its application in clonal genotyping.

Authors:  Shang-Yin Vanson Liu; Chang-Feng Dai; Tung-Yung Fan; Hon-Tsen Yu
Journal:  Mar Biotechnol (NY)       Date:  2005-03-11       Impact factor: 3.619

10.  Eucalyptus microsatellites mined in silico: survey and evaluation.

Authors:  R Yasodha; R Sumathi; P Chezhian; S Kavitha; M Ghosh
Journal:  J Genet       Date:  2008-04       Impact factor: 1.166

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