Literature DB >> 21121088

The molecular basis of white pericarps in African domesticated rice: novel mutations at the Rc gene.

B L Gross1, F T Steffen, K M Olsen.   

Abstract

Repeated phenotypic evolution can occur at both the inter- and intraspecific level and is especially prominent in domesticated plants, where artificial selection has favoured the same traits in many different species and varieties. The question of whether repeated evolution reflects changes at the same or different genes in each lineage can now be addressed using the domestication and improvement genes that have been identified in a variety of crops. Here, we document the genetic basis of nonpigmented ('white') pericarps in domesticated African rice (Oryza glaberrima) and compare it with the known genetic basis of the same trait in domesticated Asian rice (Oryza sativa). In some cases, white pericarps in African rice are apparently caused by unique mutations at the Rc gene, which also controls pericarp colour variation in Asian rice. In one case, white pericarps appear to reflect changes at a different gene or potentially a cis-regulatory region.
© 2010 The Authors. Journal Compilation © 2010 European Society For Evolutionary Biology.

Entities:  

Mesh:

Year:  2010        PMID: 21121088      PMCID: PMC3058869          DOI: 10.1111/j.1420-9101.2010.02125.x

Source DB:  PubMed          Journal:  J Evol Biol        ISSN: 1010-061X            Impact factor:   2.411


  32 in total

Review 1.  African rice (Oryza glaberrima): history and future potential.

Authors:  Olga F Linares
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-02       Impact factor: 11.205

2.  Molecular evidence on the origin and evolution of glutinous rice.

Authors:  Kenneth M Olsen; Michael D Purugganan
Journal:  Genetics       Date:  2002-10       Impact factor: 4.562

3.  Isolation of three dormancy QTLs as Mendelian factors in rice.

Authors:  X Y Gu; S F Kianian; M E Foley
Journal:  Heredity (Edinb)       Date:  2006-01       Impact factor: 3.821

4.  Diverse origins of waxy foxtail millet crops in East and Southeast Asia mediated by multiple transposable element insertions.

Authors:  Makoto Kawase; Kenji Fukunaga; Kenji Kato
Journal:  Mol Genet Genomics       Date:  2005-10-11       Impact factor: 3.291

5.  Genetic analysis of adaptive syndromes interrelated with seed dormancy in weedy rice (Oryza sativa).

Authors:  Xing-You Gu; Shahryar F Kianian; Gary A Hareland; Barry L Hoffer; Michael E Foley
Journal:  Theor Appl Genet       Date:  2005-03-22       Impact factor: 5.699

6.  High-density AFLP map of nonbrittle rachis 1 (btr1) and 2 (btr2) genes in barley (Hordeum vulgare L.).

Authors:  T Komatsuda; P Maxim; N Senthil; Y Mano
Journal:  Theor Appl Genet       Date:  2004-07-31       Impact factor: 5.699

7.  Multiple loci and epistases control genetic variation for seed dormancy in weedy rice (Oryza sativa).

Authors:  Xing-You Gu; Shahryar F Kianian; Michael E Foley
Journal:  Genetics       Date:  2004-03       Impact factor: 4.562

8.  Genetic control of branching in foxtail millet.

Authors:  Andrew N Doust; Katrien M Devos; Michael D Gadberry; Mike D Gale; Elizabeth A Kellogg
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-07       Impact factor: 11.205

9.  Structural variation in the Waxy gene and differentiation in foxtail millet [Setaria italica (L.) P. Beauv.]: implications for multiple origins of the waxy phenotype.

Authors:  K Fukunaga; M Kawase; K Kato
Journal:  Mol Genet Genomics       Date:  2002-08-24       Impact factor: 3.291

10.  The population structure of African cultivated rice oryza glaberrima (Steud.): evidence for elevated levels of linkage disequilibrium caused by admixture with O. sativa and ecological adaptation.

Authors:  Mande Semon; Rasmus Nielsen; Monty P Jones; Susan R McCouch
Journal:  Genetics       Date:  2004-11-15       Impact factor: 4.562

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  13 in total

1.  The isolation of Pi1, an allele at the Pik locus which confers broad spectrum resistance to rice blast.

Authors:  Lixia Hua; Jianzhong Wu; Caixia Chen; Weihuai Wu; Xiuying He; Fei Lin; Li Wang; Ikuo Ashikawa; Takashi Matsumoto; Ling Wang; Qinghua Pan
Journal:  Theor Appl Genet       Date:  2012-05-29       Impact factor: 5.699

Review 2.  Evolution of crop species: genetics of domestication and diversification.

Authors:  Rachel S Meyer; Michael D Purugganan
Journal:  Nat Rev Genet       Date:  2013-12       Impact factor: 53.242

3.  Archaeological and genetic insights into the origins of domesticated rice.

Authors:  Briana L Gross; Zhijun Zhao
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-21       Impact factor: 11.205

4.  Loss of function at RAE2, a previously unidentified EPFL, is required for awnlessness in cultivated Asian rice.

Authors:  Kanako Bessho-Uehara; Diane R Wang; Tomoyuki Furuta; Anzu Minami; Keisuke Nagai; Rico Gamuyao; Kenji Asano; Rosalyn B Angeles-Shim; Yoshihiro Shimizu; Madoka Ayano; Norio Komeda; Kazuyuki Doi; Kotaro Miura; Yosuke Toda; Toshinori Kinoshita; Satohiro Okuda; Tetsuya Higashiyama; Mika Nomoto; Yasuomi Tada; Hidefumi Shinohara; Yoshikatsu Matsubayashi; Anthony Greenberg; Jianzhong Wu; Hideshi Yasui; Atsushi Yoshimura; Hitoshi Mori; Susan R McCouch; Motoyuki Ashikari
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-27       Impact factor: 11.205

5.  An evolutionary genomic tale of two rice species.

Authors:  Michael D Purugganan
Journal:  Nat Genet       Date:  2014-09       Impact factor: 38.330

6.  Little White Lies: Pericarp Color Provides Insights into the Origins and Evolution of Southeast Asian Weedy Rice.

Authors:  Yongxia Cui; Beng Kah Song; Lin-Feng Li; Ya-Ling Li; Zhongyun Huang; Ana L Caicedo; Yulin Jia; Kenneth M Olsen
Journal:  G3 (Bethesda)       Date:  2016-12-07       Impact factor: 3.154

Review 7.  Advances in Molecular Genetics and Genomics of African Rice (Oryza glaberrima Steud).

Authors:  Peterson W Wambugu; Marie-Noelle Ndjiondjop; Robert Henry
Journal:  Plants (Basel)       Date:  2019-09-26

8.  Convergent Loss of Awn in Two Cultivated Rice Species Oryza sativa and Oryza glaberrima Is Caused by Mutations in Different Loci.

Authors:  Tomoyuki Furuta; Norio Komeda; Kenji Asano; Kanako Uehara; Rico Gamuyao; Rosalyn B Angeles-Shim; Keisuke Nagai; Kazuyuki Doi; Diane R Wang; Hideshi Yasui; Atsushi Yoshimura; Jianzhong Wu; Susan R McCouch; Motoyuki Ashikari
Journal:  G3 (Bethesda)       Date:  2015-09-02       Impact factor: 3.154

9.  Crop plants as models for understanding plant adaptation and diversification.

Authors:  Kenneth M Olsen; Jonathan F Wendel
Journal:  Front Plant Sci       Date:  2013-08-01       Impact factor: 5.753

10.  Processes underpinning development and maintenance of diversity in rice in West Africa: evidence from combining morphological and molecular markers.

Authors:  Alfred Mokuwa; Edwin Nuijten; Florent Okry; Béla Teeken; Harro Maat; Paul Richards; Paul C Struik
Journal:  PLoS One       Date:  2014-01-20       Impact factor: 3.240

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