Literature DB >> 2111846

Evolution of the mitochondrial genetic code. III. Reassignment of CUN codons from leucine to threonine during evolution of yeast mitochondria.

S Osawa1, D Collins, T Ohama, T H Jukes, K Watanabe.   

Abstract

Yeast mitochondria use UUR as the sole leucine codons. CUN, universal leucine codons, are read as threonine by aberrant threonine tRNA with anticodon sequence (UAG). The reassignment of CUN codons to threonine during yeast mitochondrial evolution could have proceeded by the disappearance of CUN codons from the reading frames of messenger RNA, through mutation mainly to UUR leucine codons as a result of AT pressure. We suggest that this was accompanied by a loss of leucine-accepting ability of tRNA Leu(UAG). This tRNA could have then acquired threonine-accepting activity through the appearance of an additional threonyl-tRNA synthetase. CUN codons that subsequently appeared from mutations of various other codons would have been translated as threonine. This change in the yeast mitochondrial genetic code is likely to have evolved through a series of nondisruptive nucleotide substitutions that produced no widespread replacement of leucine by threonine in proteins as a consequence.

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Year:  1990        PMID: 2111846     DOI: 10.1007/bf02101886

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  34 in total

1.  On the genetic basis of variation and heterogeneity of DNA base composition.

Authors:  N SUEOKA
Journal:  Proc Natl Acad Sci U S A       Date:  1962-04-15       Impact factor: 11.205

2.  Codon usage tabulated from the GenBank Genetic Sequence Data.

Authors:  S Aota; T Gojobori; F Ishibashi; T Maruyama; T Ikemura
Journal:  Nucleic Acids Res       Date:  1988       Impact factor: 16.971

3.  Cloning and characterization of the gene for the yeast cytoplasmic threonyl-tRNA synthetase.

Authors:  L K Pape; A Tzagoloff
Journal:  Nucleic Acids Res       Date:  1985-09-11       Impact factor: 16.971

Review 4.  Compilation of tRNA sequences and sequences of tRNA genes.

Authors:  M Sprinzl; T Hartmann; F Meissner; J Moll; T Vorderwülbecke
Journal:  Nucleic Acids Res       Date:  1987       Impact factor: 16.971

5.  Amino acid codes in mitochondria as possible clues to primitive codes.

Authors:  T H Jukes
Journal:  J Mol Evol       Date:  1981       Impact factor: 2.395

6.  The GC clusters of the mitochondrial genome of yeast and their evolutionary origin.

Authors:  M de Zamaroczy; G Bernardi
Journal:  Gene       Date:  1986       Impact factor: 3.688

7.  Evolution of the mitochondrial genetic code. I. Origin of AGR serine and stop codons in metazoan mitochondria.

Authors:  S Osawa; T Ohama; T H Jukes; K Watanabe
Journal:  J Mol Evol       Date:  1989-09       Impact factor: 2.395

8.  Nucleotide sequence of Aspergillus nidulans mitochondrial genes coding for ATPase subunit 6, cytochrome oxidase subunit 3, seven unidentified proteins, four tRNAs and L-rRNA.

Authors:  R Netzker; H G Köchel; N Basak; H Küntzel
Journal:  Nucleic Acids Res       Date:  1982-08-11       Impact factor: 16.971

9.  Assembly of the mitochondrial membrane system: sequence analysis of a yeast mitochondrial ATPase gene containing the oli-2 and oli-4 loci.

Authors:  G Macino; A Tzagoloff
Journal:  Cell       Date:  1980-06       Impact factor: 41.582

10.  Location of transcriptional control signals and transfer RNA sequences in Torulopsis glabrata mitochondrial DNA.

Authors:  G D Clark-Walker; C R McArthur; K S Sriprakash
Journal:  EMBO J       Date:  1985-02       Impact factor: 11.598

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  14 in total

1.  tRNomics: analysis of tRNA genes from 50 genomes of Eukarya, Archaea, and Bacteria reveals anticodon-sparing strategies and domain-specific features.

Authors:  Christian Marck; Henri Grosjean
Journal:  RNA       Date:  2002-10       Impact factor: 4.942

Review 2.  The genetic code in mitochondria and chloroplasts.

Authors:  T H Jukes; S Osawa
Journal:  Experientia       Date:  1990-12-01

Review 3.  Recent evidence for evolution of the genetic code.

Authors:  S Osawa; T H Jukes; K Watanabe; A Muto
Journal:  Microbiol Rev       Date:  1992-03

4.  A comparative genomics analysis of codon reassignments reveals a link with mitochondrial proteome size and a mechanism of genetic code change via suppressor tRNAs.

Authors:  Steven E Massey; James R Garey
Journal:  J Mol Evol       Date:  2007-03-27       Impact factor: 2.395

Review 5.  Genetic code 1990. Outlook.

Authors:  T H Jukes
Journal:  Experientia       Date:  1990-12-01

Review 6.  Pathways of Genetic Code Evolution in Ancient and Modern Organisms.

Authors:  Supratim Sengupta; Paul G Higgs
Journal:  J Mol Evol       Date:  2015-06-09       Impact factor: 2.395

7.  Comparative evolutionary genomics unveils the molecular mechanism of reassignment of the CTG codon in Candida spp.

Authors:  Steven E Massey; Gabriela Moura; Pedro Beltrão; Ricardo Almeida; James R Garey; Mick F Tuite; Manuel A S Santos
Journal:  Genome Res       Date:  2003-04       Impact factor: 9.043

8.  Transfer RNA structural change is a key element in the reassignment of the CUG codon in Candida albicans.

Authors:  M A Santos; V M Perreau; M F Tuite
Journal:  EMBO J       Date:  1996-09-16       Impact factor: 11.598

Review 9.  The evolutionary change of the genetic code as restricted by the anticodon and identity of transfer RNA.

Authors:  T Ueda; K Watanabe
Journal:  Orig Life Evol Biosph       Date:  1993-12       Impact factor: 1.950

Review 10.  Experimental studies on the origin of the genetic code and the process of protein synthesis: a review update.

Authors:  J C Lacey; N S Wickramasinghe; G W Cook
Journal:  Orig Life Evol Biosph       Date:  1992       Impact factor: 1.950

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