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Literature DB >> 21116245

The RNA structurome: high-throughput probing.

Eric Westhof, Pascale Romby.

Abstract

Mesh：

Substances：
RNA

Year: 2010 PMID： 21116245 DOI： 10.1038/nmeth1210-965

Source DB: PubMed Journal: Nat Methods ISSN： 1548-7091 Impact factor: 28.547

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12 in total

Review 1. The widespread regulation of microRNA biogenesis, function and decay.

Authors: Jacek Krol; Inga Loedige; Witold Filipowicz
Journal: Nat Rev Genet Date: 2010-07-27 Impact factor: 53.242

Review 2. High-throughput DNA sequencing--concepts and limitations.

Authors: Martin Kircher; Janet Kelso
Journal: Bioessays Date: 2010-06 Impact factor: 4.345

3. ChIP-Seq using high-throughput DNA sequencing for genome-wide identification of transcription factor binding sites.

Authors: Philippe Lefrançois; Wei Zheng; Michael Snyder
Journal: Methods Enzymol Date: 2010-03-01 Impact factor: 1.600

4. The dynamic landscapes of RNA architecture.

Authors: José Almeida Cruz; Eric Westhof
Journal: Cell Date: 2009-02-20 Impact factor: 41.582

Review 5. Regulatory RNAs in bacteria.

Authors: Lauren S Waters; Gisela Storz
Journal: Cell Date: 2009-02-20 Impact factor: 41.582

6. RNAstructure: software for RNA secondary structure prediction and analysis.

Authors: Jessica S Reuter; David H Mathews
Journal: BMC Bioinformatics Date: 2010-03-15 Impact factor: 3.169

7. Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.

Authors: Nicholas T Ingolia; Sina Ghaemmaghami; John R S Newman; Jonathan S Weissman
Journal: Science Date: 2009-02-12 Impact factor: 47.728

8. FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing.

Authors: Jason G Underwood; Andrew V Uzilov; Sol Katzman; Courtney S Onodera; Jacob E Mainzer; David H Mathews; Todd M Lowe; Sofie R Salama; David Haussler
Journal: Nat Methods Date: 2010-11-07 Impact factor: 28.547

9. Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps.

Authors: Sung Wook Chi; Julie B Zang; Aldo Mele; Robert B Darnell
Journal: Nature Date: 2009-06-17 Impact factor: 49.962

10. The UCSC Genome Browser database: update 2010.

Authors: Brooke Rhead; Donna Karolchik; Robert M Kuhn; Angie S Hinrichs; Ann S Zweig; Pauline A Fujita; Mark Diekhans; Kayla E Smith; Kate R Rosenbloom; Brian J Raney; Andy Pohl; Michael Pheasant; Laurence R Meyer; Katrina Learned; Fan Hsu; Jennifer Hillman-Jackson; Rachel A Harte; Belinda Giardine; Timothy R Dreszer; Hiram Clawson; Galt P Barber; David Haussler; W James Kent
Journal: Nucleic Acids Res Date: 2009-11-11 Impact factor: 16.971

16 in total

1. FASTR: A novel data format for concomitant representation of RNA sequence and secondary structure information.

Authors: Tungadri Bose; Anirban Dutta; Mohammed Mh; Hemang Gandhi; Sharmila S Mande
Journal: J Biosci Date: 2015-09 Impact factor: 1.826

Review 2. Interplay of chromatin modifications and non-coding RNAs in the heart.

Authors: Prabhu Mathiyalagan; Samuel T Keating; Xiao-Jun Du; Assam El-Osta
Journal: Epigenetics Date: 2013-10-10 Impact factor: 4.528

3. Tracking miRNA precursor metabolic products and processing sites through completely analyzing high-throughput sequencing data.

Authors: Li Guo; Hailing Li; Jiafeng Lu; Qi Yang; Qinyu Ge; Wanjun Gu; Yunfei Bai; Zuhong Lu
Journal: Mol Biol Rep Date: 2011-06-03 Impact factor: 2.316

The RNA structurome: high-throughput probing.

Review 1. The widespread regulation of microRNA biogenesis, function and decay.

Review 2. High-throughput DNA sequencing--concepts and limitations.

3. ChIP-Seq using high-throughput DNA sequencing for genome-wide identification of transcription factor binding sites.

4. The dynamic landscapes of RNA architecture.

Review 5. Regulatory RNAs in bacteria.

6. RNAstructure: software for RNA secondary structure prediction and analysis.

7. Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.

8. FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing.

9. Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps.

10. The UCSC Genome Browser database: update 2010.

1. FASTR: A novel data format for concomitant representation of RNA sequence and secondary structure information.

Review 2. Interplay of chromatin modifications and non-coding RNAs in the heart.

3. Tracking miRNA precursor metabolic products and processing sites through completely analyzing high-throughput sequencing data.

Review 4. The use of high-throughput sequencing methods for plant microRNA research.

5. Joint modeling of RNase footprint sequencing profiles for genome-wide inference of RNA structure.

6. SAVoR: a server for sequencing annotation and visualization of RNA structures.

7. Sequence-structure relationships in yeast mRNAs.

8. Mod-seq: high-throughput sequencing for chemical probing of RNA structure.

Review 9. Tackling structures of long noncoding RNAs.

Review 10. Solving nucleic acid structures by molecular replacement: examples from group II intron studies.