Literature DB >> 19239882

The dynamic landscapes of RNA architecture.

José Almeida Cruz1, Eric Westhof.   

Abstract

A wealth of information on RNA folding and ribonucleoprotein assembly has emerged from analyses of structures and from the use of innovative biophysical tools. Although integrating data obtained from static structures with dynamic measurements presents major challenges, such efforts are opening new vistas on the RNA folding landscape.

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Year:  2009        PMID: 19239882     DOI: 10.1016/j.cell.2009.02.003

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  132 in total

1.  Site-specific platinum(II) cross-linking in a ribozyme active site.

Authors:  Erich G Chapman; Victoria J DeRose
Journal:  J Am Chem Soc       Date:  2011-12-14       Impact factor: 15.419

2.  RNA modeling, naturally.

Authors:  Eric Westhof
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-03       Impact factor: 11.205

3.  SHAPE-directed discovery of potent shRNA inhibitors of HIV-1.

Authors:  Justin T Low; Stefanie A Knoepfel; Joseph M Watts; Olivier ter Brake; Ben Berkhout; Kevin M Weeks
Journal:  Mol Ther       Date:  2012-02-07       Impact factor: 11.454

Review 4.  Bacterial RNA thermometers: molecular zippers and switches.

Authors:  Jens Kortmann; Franz Narberhaus
Journal:  Nat Rev Microbiol       Date:  2012-03-16       Impact factor: 60.633

5.  Predicting ion binding properties for RNA tertiary structures.

Authors:  Zhi-Jie Tan; Shi-Jie Chen
Journal:  Biophys J       Date:  2010-09-08       Impact factor: 4.033

Review 6.  Predicting and modeling RNA architecture.

Authors:  Eric Westhof; Benoît Masquida; Fabrice Jossinet
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-02-01       Impact factor: 10.005

7.  Developing three-dimensional models of putative-folding intermediates of the HDV ribozyme.

Authors:  Cédric Reymond; Dominique Lévesque; Martin Bisaillon; Jean-Pierre Perreault
Journal:  Structure       Date:  2010-12-08       Impact factor: 5.006

8.  The RNA structurome: high-throughput probing.

Authors:  Eric Westhof; Pascale Romby
Journal:  Nat Methods       Date:  2010-12       Impact factor: 28.547

9.  Mapping L1 ligase ribozyme conformational switch.

Authors:  George M Giambaşu; Tai-Sung Lee; William G Scott; Darrin M York
Journal:  J Mol Biol       Date:  2012-07-03       Impact factor: 5.469

Review 10.  Characterizing excited conformational states of RNA by NMR spectroscopy.

Authors:  Bo Zhao; Qi Zhang
Journal:  Curr Opin Struct Biol       Date:  2015-03-10       Impact factor: 6.809

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