Literature DB >> 19239884

Regulatory RNAs in bacteria.

Lauren S Waters1, Gisela Storz.   

Abstract

Bacteria possess numerous and diverse means of gene regulation using RNA molecules, including mRNA leaders that affect expression in cis, small RNAs that bind to proteins or base pair with target RNAs, and CRISPR RNAs that inhibit the uptake of foreign DNA. Although examples of RNA regulators have been known for decades in bacteria, we are only now coming to a full appreciation of their importance and prevalence. Here, we review the known mechanisms and roles of regulatory RNAs, highlight emerging themes, and discuss remaining questions.

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Year:  2009        PMID: 19239884      PMCID: PMC3132550          DOI: 10.1016/j.cell.2009.01.043

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  118 in total

1.  An RNA thermosensor controls expression of virulence genes in Listeria monocytogenes.

Authors:  Jörgen Johansson; Pierre Mandin; Adriana Renzoni; Claude Chiaruttini; Mathias Springer; Pascale Cossart
Journal:  Cell       Date:  2002-09-06       Impact factor: 41.582

Review 2.  Gene regulation by riboswitches.

Authors:  Maumita Mandal; Ronald R Breaker
Journal:  Nat Rev Mol Cell Biol       Date:  2004-06       Impact factor: 94.444

3.  Identification of novel non-coding RNAs as potential antisense regulators in the archaeon Sulfolobus solfataricus.

Authors:  Thean-Hock Tang; Norbert Polacek; Marek Zywicki; Harald Huber; Kim Brugger; Roger Garrett; Jean Pierre Bachellerie; Alexander Hüttenhofer
Journal:  Mol Microbiol       Date:  2005-01       Impact factor: 3.501

Review 4.  The tmRNA system for translational surveillance and ribosome rescue.

Authors:  Sean D Moore; Robert T Sauer
Journal:  Annu Rev Biochem       Date:  2007       Impact factor: 23.643

Review 5.  Hfq structure, function and ligand binding.

Authors:  Richard G Brennan; Todd M Link
Journal:  Curr Opin Microbiol       Date:  2007-03-28       Impact factor: 7.934

Review 6.  The post-transcriptional regulator CsrA plays a central role in the adaptation of bacterial pathogens to different stages of infection in animal hosts.

Authors:  Céline Lucchetti-Miganeh; Elizabeth Burrowes; Christine Baysse; Gwennola Ermel
Journal:  Microbiology       Date:  2008-01       Impact factor: 2.777

Review 7.  Beyond silencing--engineering applications of RNA interference and antisense technology for altering cellular phenotype.

Authors:  Colin G Hebert; James J Valdes; William E Bentley
Journal:  Curr Opin Biotechnol       Date:  2008-09-25       Impact factor: 9.740

8.  Translational control of IS10 transposition.

Authors:  R W Simons; N Kleckner
Journal:  Cell       Date:  1983-09       Impact factor: 41.582

9.  Riboswitches in eubacteria sense the second messenger cyclic di-GMP.

Authors:  N Sudarsan; E R Lee; Z Weinberg; R H Moy; J N Kim; K H Link; R R Breaker
Journal:  Science       Date:  2008-07-18       Impact factor: 47.728

10.  Characterization of the role of ribonucleases in Salmonella small RNA decay.

Authors:  Sandra C Viegas; Verena Pfeiffer; Alexandra Sittka; Inês J Silva; Jörg Vogel; Cecília M Arraiano
Journal:  Nucleic Acids Res       Date:  2007-11-03       Impact factor: 16.971

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  688 in total

1.  Chloroplast RNase J compensates for inefficient transcription termination by removal of antisense RNA.

Authors:  Robert E Sharwood; Michal Halpert; Scott Luro; Gadi Schuster; David B Stern
Journal:  RNA       Date:  2011-10-27       Impact factor: 4.942

2.  The impact of CRISPR repeat sequence on structures of a Cas6 protein-RNA complex.

Authors:  Ruiying Wang; Han Zheng; Gan Preamplume; Yaming Shao; Hong Li
Journal:  Protein Sci       Date:  2012-02-09       Impact factor: 6.725

3.  Locked nucleic acid and flow cytometry-fluorescence in situ hybridization for the detection of bacterial small noncoding RNAs.

Authors:  Kelly L Robertson; Gary J Vora
Journal:  Appl Environ Microbiol       Date:  2011-11-04       Impact factor: 4.792

4.  Transcriptional and posttranscriptional events control copper-responsive expression of a Rhodobacter capsulatus multicopper oxidase.

Authors:  Corinna Rademacher; Roman Moser; Jan-Wilm Lackmann; Birgit Klinkert; Franz Narberhaus; Bernd Masepohl
Journal:  J Bacteriol       Date:  2012-01-27       Impact factor: 3.490

5.  Noncanonical repression of translation initiation through small RNA recruitment of the RNA chaperone Hfq.

Authors:  Guillaume Desnoyers; Eric Massé
Journal:  Genes Dev       Date:  2012-04-01       Impact factor: 11.361

6.  Multiple factors dictate target selection by Hfq-binding small RNAs.

Authors:  Chase L Beisel; Taylor B Updegrove; Ben J Janson; Gisela Storz
Journal:  EMBO J       Date:  2012-03-02       Impact factor: 11.598

7.  "Hypothesis for the modern RNA world": a pervasive non-coding RNA-based genetic regulation is a prerequisite for the emergence of multicellular complexity.

Authors:  Irma Lozada-Chávez; Peter F Stadler; Sonja J Prohaska
Journal:  Orig Life Evol Biosph       Date:  2012-02-10       Impact factor: 1.950

Review 8.  The mysterious RAMP proteins and their roles in small RNA-based immunity.

Authors:  Ruiying Wang; Hong Li
Journal:  Protein Sci       Date:  2012-04       Impact factor: 6.725

9.  sRNA-Mediated Control of Transcription Termination in E. coli.

Authors:  Nadezda Sedlyarova; Ilya Shamovsky; Binod K Bharati; Vitaly Epshtein; Jiandong Chen; Susan Gottesman; Renée Schroeder; Evgeny Nudler
Journal:  Cell       Date:  2016-09-22       Impact factor: 41.582

10.  Identification of non-coding RNAs with a new composite feature in the Hybrid Random Forest Ensemble algorithm.

Authors:  Supatcha Lertampaiporn; Chinae Thammarongtham; Chakarida Nukoolkit; Boonserm Kaewkamnerdpong; Marasri Ruengjitchatchawalya
Journal:  Nucleic Acids Res       Date:  2014-04-25       Impact factor: 16.971

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