Literature DB >> 21112769

Protein folding in the cell: challenges and progress.

Anne Gershenson1, Lila M Gierasch.   

Abstract

It is hard to imagine a more extreme contrast than that between the dilute solutions used for in vitro studies of protein folding and the crowded, compartmentalized, sticky, spatially inhomogeneous interior of a cell. This review highlights recent research exploring protein folding in the cell with a focus on issues that are generally not relevant to in vitro studies of protein folding, such as macromolecular crowding, hindered diffusion, cotranslational folding, molecular chaperones, and evolutionary pressures. The technical obstacles that must be overcome to characterize protein folding in the cell are driving methodological advances, and we draw attention to several examples, such as fluorescence imaging of folding in cells and genetic screens for in-cell stability.
Copyright © 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 21112769      PMCID: PMC3072030          DOI: 10.1016/j.sbi.2010.11.001

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  88 in total

Review 1.  The ribosome as a platform for co-translational processing, folding and targeting of newly synthesized proteins.

Authors:  Günter Kramer; Daniel Boehringer; Nenad Ban; Bernd Bukau
Journal:  Nat Struct Mol Biol       Date:  2009-06       Impact factor: 15.369

Review 2.  Chaperonin-mediated protein folding: using a central cavity to kinetically assist polypeptide chain folding.

Authors:  Arthur L Horwich; Wayne A Fenton
Journal:  Q Rev Biophys       Date:  2009-07-29       Impact factor: 5.318

3.  Atomistic modeling of macromolecular crowding predicts modest increases in protein folding and binding stability.

Authors:  Sanbo Qin; Huan-Xiang Zhou
Journal:  Biophys J       Date:  2009-07-08       Impact factor: 4.033

Review 4.  Stability effects of mutations and protein evolvability.

Authors:  Nobuhiko Tokuriki; Dan S Tawfik
Journal:  Curr Opin Struct Biol       Date:  2009-09-16       Impact factor: 6.809

Review 5.  Disulfide bond formation system in Escherichia coli.

Authors:  Kenji Inaba
Journal:  J Biochem       Date:  2009-06-29       Impact factor: 3.387

Review 6.  Disulfide formation in the ER and mitochondria: two solutions to a common process.

Authors:  Jan Riemer; Neil Bulleid; Johannes M Herrmann
Journal:  Science       Date:  2009-06-05       Impact factor: 47.728

Review 7.  Silent (synonymous) SNPs: should we care about them?

Authors:  Ryan Hunt; Zuben E Sauna; Suresh V Ambudkar; Michael M Gottesman; Chava Kimchi-Sarfaty
Journal:  Methods Mol Biol       Date:  2009

8.  Detecting folding intermediates of a protein as it passes through the bacterial translocation channel.

Authors:  Hiroshi Kadokura; Jon Beckwith
Journal:  Cell       Date:  2009-09-18       Impact factor: 41.582

9.  Translational and rotational diffusion of a small globular protein under crowded conditions.

Authors:  Conggang Li; Yaqiang Wang; Gary J Pielak
Journal:  J Phys Chem B       Date:  2009-10-08       Impact factor: 2.991

10.  An unfolded CH1 domain controls the assembly and secretion of IgG antibodies.

Authors:  Matthias J Feige; Sandra Groscurth; Moritz Marcinowski; Yuichiro Shimizu; Horst Kessler; Linda M Hendershot; Johannes Buchner
Journal:  Mol Cell       Date:  2009-06-12       Impact factor: 17.970

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  60 in total

Review 1.  Proteotoxic stress and circulating cell stress proteins in the cardiovascular diseases.

Authors:  Brian Henderson; A Graham Pockley
Journal:  Cell Stress Chaperones       Date:  2012-01-05       Impact factor: 3.667

2.  Protein-binding dynamics imaged in a living cell.

Authors:  Yael Phillip; Vladimir Kiss; Gideon Schreiber
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-17       Impact factor: 11.205

3.  Dimerization-dependent folding underlies assembly control of the clonotypic αβT cell receptor chains.

Authors:  Matthias J Feige; Julia Behnke; Tanja Mittag; Linda M Hendershot
Journal:  J Biol Chem       Date:  2015-09-23       Impact factor: 5.157

4.  Nanomanufacturing: A Perspective.

Authors:  J Alexander Liddle; Gregg M Gallatin
Journal:  ACS Nano       Date:  2016-02-22       Impact factor: 15.881

5.  Quantitative assessments of the distinct contributions of polypeptide backbone amides versus side chain groups to chain expansion via chemical denaturation.

Authors:  Alex S Holehouse; Kanchan Garai; Nicholas Lyle; Andreas Vitalis; Rohit V Pappu
Journal:  J Am Chem Soc       Date:  2015-02-23       Impact factor: 15.419

Review 6.  A career pathway in protein folding: from model peptides to postreductionist protein science.

Authors:  Lila M Gierasch
Journal:  Protein Sci       Date:  2011-04-04       Impact factor: 6.725

Review 7.  Comparing protein folding in vitro and in vivo: foldability meets the fitness challenge.

Authors:  Karan S Hingorani; Lila M Gierasch
Journal:  Curr Opin Struct Biol       Date:  2014-01-14       Impact factor: 6.809

8.  GroEL/ES chaperonin modulates the mechanism and accelerates the rate of TIM-barrel domain folding.

Authors:  Florian Georgescauld; Kristina Popova; Amit J Gupta; Andreas Bracher; John R Engen; Manajit Hayer-Hartl; F Ulrich Hartl
Journal:  Cell       Date:  2014-05-08       Impact factor: 41.582

9.  Minimal effects of macromolecular crowding on an intrinsically disordered protein: a small-angle neutron scattering study.

Authors:  David P Goldenberg; Brian Argyle
Journal:  Biophys J       Date:  2014-02-18       Impact factor: 4.033

Review 10.  Evolution of Structural Biology through the Lens of Mass Spectrometry.

Authors:  Upneet Kaur; Danté T Johnson; Emily E Chea; Daniel J Deredge; Jessica A Espino; Lisa M Jones
Journal:  Anal Chem       Date:  2018-12-06       Impact factor: 6.986

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