Literature DB >> 19491936

The ribosome as a platform for co-translational processing, folding and targeting of newly synthesized proteins.

Günter Kramer1, Daniel Boehringer, Nenad Ban, Bernd Bukau.   

Abstract

The early events in the life of newly synthesized proteins in the cellular environment are remarkably complex. Concurrently with their synthesis by the ribosome, nascent polypeptides are subjected to enzymatic processing, chaperone-assisted folding or targeting to translocation pores at membranes. The ribosome itself has a key role in these different tasks and governs the interplay between the various factors involved. Indeed, the ribosome serves as a platform for the spatially and temporally regulated association of enzymes, targeting factors and chaperones that act upon the nascent polypeptides emerging from the exit tunnel. Furthermore, the ribosome provides opportunities to coordinate the protein-synthesis activity of its peptidyl transferase center with the protein targeting and folding processes. Here we review the early co-translational events involving the ribosome that guide cytosolic proteins to their native state.

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Year:  2009        PMID: 19491936     DOI: 10.1038/nsmb.1614

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  128 in total

1.  Architecture of the protein-conducting channel associated with the translating 80S ribosome.

Authors:  R Beckmann; C M Spahn; N Eswar; J Helmers; P A Penczek; A Sali; J Frank; G Blobel
Journal:  Cell       Date:  2001-11-02       Impact factor: 41.582

2.  The ribosomal exit tunnel functions as a discriminating gate.

Authors:  Hitoshi Nakatogawa; Koreaki Ito
Journal:  Cell       Date:  2002-03-08       Impact factor: 41.582

3.  Simultaneous binding of trigger factor and signal recognition particle to the E. coli ribosome.

Authors:  Amanda Raine; Natalia Ivanova; Jarl E S Wikberg; Måns Ehrenberg
Journal:  Biochimie       Date:  2004-07       Impact factor: 4.079

4.  Systems analyses reveal two chaperone networks with distinct functions in eukaryotic cells.

Authors:  Véronique Albanèse; Alice Yen-Wen Yam; Joshua Baughman; Charles Parnot; Judith Frydman
Journal:  Cell       Date:  2006-01-13       Impact factor: 41.582

Review 5.  Folding at the rhythm of the rare codon beat.

Authors:  Monica Marin
Journal:  Biotechnol J       Date:  2008-08       Impact factor: 4.677

6.  Nascent membrane and presecretory proteins synthesized in Escherichia coli associate with signal recognition particle and trigger factor.

Authors:  Q A Valent; J W de Gier; G von Heijne; D A Kendall; C M ten Hagen-Jongman; B Oudega; J Luirink
Journal:  Mol Microbiol       Date:  1997-07       Impact factor: 3.501

7.  Hsp110 cooperates with different cytosolic HSP70 systems in a pathway for de novo folding.

Authors:  Alice Yen-Wen Yam; Véronique Albanèse; Hen-Tzu Jill Lin; Judith Frydman
Journal:  J Biol Chem       Date:  2005-10-11       Impact factor: 5.157

8.  L23 protein functions as a chaperone docking site on the ribosome.

Authors:  Günter Kramer; Thomas Rauch; Wolfgang Rist; Sonja Vorderwülbecke; Holger Patzelt; Agnes Schulze-Specking; Nenad Ban; Elke Deuerling; Bernd Bukau
Journal:  Nature       Date:  2002-09-12       Impact factor: 49.962

9.  Cotranslational folding promotes beta-helix formation and avoids aggregation in vivo.

Authors:  Michael S Evans; Ian M Sander; Patricia L Clark
Journal:  J Mol Biol       Date:  2008-07-22       Impact factor: 5.469

10.  Cellular mechanisms of membrane protein folding.

Authors:  William R Skach
Journal:  Nat Struct Mol Biol       Date:  2009-06       Impact factor: 15.369

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  206 in total

1.  Study on the chaperone properties of conserved GTPases.

Authors:  Xiang Wang; Jiaying Xue; Zhe Sun; Yan Qin; Weimin Gong
Journal:  Protein Cell       Date:  2012-01-13       Impact factor: 14.870

2.  Kinetic analysis of ribosome-bound fluorescent proteins reveals an early, stable, cotranslational folding intermediate.

Authors:  Devaki A Kelkar; Amardeep Khushoo; Zhongying Yang; William R Skach
Journal:  J Biol Chem       Date:  2011-11-28       Impact factor: 5.157

3.  Using SecM arrest sequence as a tool to isolate ribosome bound polypeptides.

Authors:  Sujata S Jha; Anton A Komar
Journal:  J Vis Exp       Date:  2012-06-19       Impact factor: 1.355

4.  Megadalton complexes in the chloroplast stroma of Arabidopsis thaliana characterized by size exclusion chromatography, mass spectrometry, and hierarchical clustering.

Authors:  Paul Dominic B Olinares; Lalit Ponnala; Klaas J van Wijk
Journal:  Mol Cell Proteomics       Date:  2010-04-26       Impact factor: 5.911

5.  Proteins at the polypeptide tunnel exit of the yeast mitochondrial ribosome.

Authors:  Steffi Gruschke; Kerstin Gröne; Manfred Heublein; Stefanie Hölz; Lars Israel; Axel Imhof; Johannes M Herrmann; Martin Ott
Journal:  J Biol Chem       Date:  2010-04-19       Impact factor: 5.157

6.  Versatility of trigger factor interactions with ribosome-nascent chain complexes.

Authors:  Sathish Kumar Lakshmipathy; Rashmi Gupta; Stefan Pinkert; Stephanie Anne Etchells; F Ulrich Hartl
Journal:  J Biol Chem       Date:  2010-07-01       Impact factor: 5.157

Review 7.  Protein folding in the cytoplasm and the heat shock response.

Authors:  R Martin Vabulas; Swasti Raychaudhuri; Manajit Hayer-Hartl; F Ulrich Hartl
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-12       Impact factor: 10.005

8.  Full reconstruction of a vectorial protein folding pathway by atomic force microscopy and molecular dynamics simulations.

Authors:  Whasil Lee; Xiancheng Zeng; Huan-Xiang Zhou; Vann Bennett; Weitao Yang; Piotr E Marszalek
Journal:  J Biol Chem       Date:  2010-09-24       Impact factor: 5.157

9.  N-terminal protein acetylation by NatB modulates the levels of Nmnats, the NAD+ biosynthetic enzymes in Saccharomyces cerevisiae.

Authors:  Trevor Croft; Padmaja Venkatakrishnan; Christol James Theoga Raj; Benjamin Groth; Timothy Cater; Michelle R Salemi; Brett Phinney; Su-Ju Lin
Journal:  J Biol Chem       Date:  2020-04-16       Impact factor: 5.157

10.  Structural basis for protein antiaggregation activity of the trigger factor chaperone.

Authors:  Tomohide Saio; Xiao Guan; Paolo Rossi; Anastassios Economou; Charalampos G Kalodimos
Journal:  Science       Date:  2014-05-09       Impact factor: 47.728

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