Literature DB >> 19765975

Stability effects of mutations and protein evolvability.

Nobuhiko Tokuriki1, Dan S Tawfik.   

Abstract

The past several years have seen novel insights at the interface of protein biophysics and evolution. The accepted paradigm that proteins can tolerate nearly any amino acid substitution has been replaced by the view that the deleterious effects of mutations, and especially their tendency to undermine the thermodynamic and kinetic stability of protein, is a major constraint on protein evolvability--the ability of proteins to acquire changes in sequence and function. We summarize recent findings regarding how mutations affect protein stability, and how stability affects protein evolution. We describe ways of predicting and analyzing stability effects of mutations, and mechanisms that buffer or compensate for these destabilizing effects and thereby promote protein evolvabilty, in nature and in the laboratory.

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Year:  2009        PMID: 19765975     DOI: 10.1016/j.sbi.2009.08.003

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  267 in total

1.  Thermodynamic stability explains the differential evolutionary dynamics of cytochrome b and COX I in mammals.

Authors:  Juan Carlos Aledo; Héctor Valverde; Manuel Ruíz-Camacho
Journal:  J Mol Evol       Date:  2012-02-24       Impact factor: 2.395

2.  Level of gene expression is a major determinant of protein evolution in the viral order Mononegavirales.

Authors:  Israel Pagán; Edward C Holmes; Etienne Simon-Loriere
Journal:  J Virol       Date:  2012-02-15       Impact factor: 5.103

3.  Dynamics of thermodynamically stable, kinetically trapped, and inhibitor-bound states of pepsin.

Authors:  Derek R Dee; Brenna Myers; Rickey Y Yada
Journal:  Biophys J       Date:  2011-10-05       Impact factor: 4.033

Review 4.  Mutational effects and the evolution of new protein functions.

Authors:  Misha Soskine; Dan S Tawfik
Journal:  Nat Rev Genet       Date:  2010-08       Impact factor: 53.242

5.  Experimental evolution of adenylate kinase reveals contrasting strategies toward protein thermostability.

Authors:  Corwin Miller; Milya Davlieva; Corey Wilson; Kristopher I White; Rafael Couñago; Gang Wu; Jeffrey C Myers; Pernilla Wittung-Stafshede; Yousif Shamoo
Journal:  Biophys J       Date:  2010-08-04       Impact factor: 4.033

6.  Role of conservative mutations in protein multi-property adaptation.

Authors:  David Rodriguez-Larrea; Raul Perez-Jimenez; Inmaculada Sanchez-Romero; Asuncion Delgado-Delgado; Julio M Fernandez; Jose M Sanchez-Ruiz
Journal:  Biochem J       Date:  2010-07-15       Impact factor: 3.857

7.  Sequence space and the ongoing expansion of the protein universe.

Authors:  Inna S Povolotskaya; Fyodor A Kondrashov
Journal:  Nature       Date:  2010-05-19       Impact factor: 49.962

8.  Packing of the extracellular domain hydrophobic core has evolved to facilitate pentameric ligand-gated ion channel function.

Authors:  Cosma D Dellisanti; Sonya M Hanson; Lin Chen; Cynthia Czajkowski
Journal:  J Biol Chem       Date:  2010-11-22       Impact factor: 5.157

Review 9.  Engineering reduced evolutionary potential for synthetic biology.

Authors:  Brian A Renda; Michael J Hammerling; Jeffrey E Barrick
Journal:  Mol Biosyst       Date:  2014-02-21

10.  Rationally designed perturbation factor drives evolution in Saccharomyces cerevisiae for industrial application.

Authors:  Xin Xu; Chunfeng Liu; Chengtuo Niu; Jinjing Wang; Feiyun Zheng; Yongxian Li; Qi Li
Journal:  J Ind Microbiol Biotechnol       Date:  2018-08-03       Impact factor: 3.346

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