Literature DB >> 21112275

A 3-D model of ligand transport in a deforming extracellular space.

Nikola Kojić1, Austin Huang, Euiheon Chung, Miloš Ivanović, Nenad Filipović, Miloš Kojić, Daniel J Tschumperlin.   

Abstract

Cells communicate through shed or secreted ligands that traffic through the interstitium. Force-induced changes in interstitial geometry can initiate mechanotransduction responses through changes in local ligand concentrations. To gain insight into the temporal and spatial evolution of such mechanotransduction responses, we developed a 3-D computational model that couples geometric changes observed in the lateral intercellular space (LIS) of mechanically loaded airway epithelial cells to the diffusion-convection equations that govern ligand transport. By solving the 3-D fluid field under changing boundary geometries, and then coupling the fluid velocities to the ligand transport equations, we calculated the temporal changes in the 3-D ligand concentration field. Our results illustrate the steady-state heterogeneities in ligand distribution that arise from local variations in interstitial geometry, and demonstrate that highly localized changes in ligand concentration can be induced by mechanical loading, depending on both local deformations and ligand convection effects. The occurrence of inhomogeneities at steady state and in response to mechanical loading suggest that local variations in ligand concentration may have important effects on cell-to-cell variations in basal signaling state and localized mechanotransduction responses.
Copyright © 2010 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 21112275      PMCID: PMC2998622          DOI: 10.1016/j.bpj.2010.09.044

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  12 in total

1.  Mechanotransduction through growth-factor shedding into the extracellular space.

Authors:  Daniel J Tschumperlin; Guohao Dai; Ivan V Maly; Tadashi Kikuchi; Lily H Laiho; Anna K McVittie; Kathleen J Haley; Craig M Lilly; Peter T C So; Douglas A Lauffenburger; Roger D Kamm; Jeffrey M Drazen
Journal:  Nature       Date:  2004-04-21       Impact factor: 49.962

2.  Computational modeling of extracellular mechanotransduction.

Authors:  Nikola Kojić; Milos Kojić; Daniel J Tschumperlin
Journal:  Biophys J       Date:  2006-03-13       Impact factor: 4.033

Review 3.  Computational modeling of the EGF-receptor system: a paradigm for systems biology.

Authors:  H Steven Wiley; Stanislav Y Shvartsman; Douglas A Lauffenburger
Journal:  Trends Cell Biol       Date:  2003-01       Impact factor: 20.808

4.  Relationship of epidermal growth factor receptors to goblet cell production in human bronchi.

Authors:  K Takeyama; J V Fahy; J A Nadel
Journal:  Am J Respir Crit Care Med       Date:  2001-02       Impact factor: 21.405

5.  An EGFR autocrine loop encodes a slow-reacting but dominant mode of mechanotransduction in a polarized epithelium.

Authors:  Nikola Kojic; Euiheon Chung; Alvin T Kho; Jin-Ah Park; Austin Huang; Peter T C So; Daniel J Tschumperlin
Journal:  FASEB J       Date:  2010-01-07       Impact factor: 5.191

6.  Quantification of three-dimensional dynamics of intercellular geometry under mechanical loading using a weighted directional adaptive-threshold method.

Authors:  Nikola Kojic; Austin Huang; Euiheon Chung; Daniel Tschumperlin; Peter T So
Journal:  Opt Express       Date:  2008-08-04       Impact factor: 3.894

7.  Transcriptional profiling of mucociliary differentiation in human airway epithelial cells.

Authors:  Andrea J Ross; Lisa A Dailey; Luisa E Brighton; Robert B Devlin
Journal:  Am J Respir Cell Mol Biol       Date:  2007-04-05       Impact factor: 6.914

8.  Chronic intermittent mechanical stress increases MUC5AC protein expression.

Authors:  Jin-Ah Park; Daniel J Tschumperlin
Journal:  Am J Respir Cell Mol Biol       Date:  2009-01-23       Impact factor: 6.914

9.  IL-13-induced Clara cell secretory protein expression in airway epithelium: role of EGFR signaling pathway.

Authors:  Suil Kim; Jae Jeong Shim; Pierre-Regis Burgel; Iris F Ueki; Trang Dao-Pick; Dominic Cheng-Wei Tam; Jay A Nadel
Journal:  Am J Physiol Lung Cell Mol Physiol       Date:  2002-07       Impact factor: 5.464

10.  Modeling and computational analysis of EGF receptor-mediated cell communication in Drosophila oogenesis.

Authors:  Stanislav Y Shvartsman; Cyrill B Muratov; Douglas A Lauffenburger
Journal:  Development       Date:  2002-06       Impact factor: 6.868

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  7 in total

1.  miR-146a regulates mechanotransduction and pressure-induced inflammation in small airway epithelium.

Authors:  Yan Huang; Melissa Crawford; Natalia Higuita-Castro; Patrick Nana-Sinkam; Samir N Ghadiali
Journal:  FASEB J       Date:  2012-05-16       Impact factor: 5.191

2.  Ion Electrodiffusion Governs Silk Electrogelation.

Authors:  Nikola Kojic; Matthew J Panzer; Gary G Leisk; Waseem K Raja; Milos Kojic; David L Kaplan
Journal:  Soft Matter       Date:  2012-05-28       Impact factor: 3.679

3.  A computational study of circulating large tumor cells traversing microvessels.

Authors:  Nikola Kojić; Miljan Milošević; Dejan Petrović; Velibor Isailović; A Fatih Sarioglu; Daniel A Haber; Miloš Kojić; Mehmet Toner
Journal:  Comput Biol Med       Date:  2015-06-10       Impact factor: 4.589

4.  Measuring neutrophil speed and directionality during chemotaxis, directly from a droplet of whole blood.

Authors:  Anh N Hoang; Caroline N Jones; Laurie Dimisko; Bashar Hamza; Joseph Martel; Nikola Kojic; Daniel Irimia
Journal:  Technology (Singap World Sci)       Date:  2013-10-02

5.  Multi-scale agent-based modeling on melanoma and its related angiogenesis analysis.

Authors:  Jun Wang; Le Zhang; Chenyang Jing; Gang Ye; Hulin Wu; Hongyu Miao; Yukun Wu; Xiaobo Zhou
Journal:  Theor Biol Med Model       Date:  2013-06-21       Impact factor: 2.432

6.  A microfluidic device for label-free, physical capture of circulating tumor cell clusters.

Authors:  A Fatih Sarioglu; Nicola Aceto; Nikola Kojic; Maria C Donaldson; Mahnaz Zeinali; Bashar Hamza; Amanda Engstrom; Huili Zhu; Tilak K Sundaresan; David T Miyamoto; Xi Luo; Aditya Bardia; Ben S Wittner; Sridhar Ramaswamy; Toshi Shioda; David T Ting; Shannon L Stott; Ravi Kapur; Shyamala Maheswaran; Daniel A Haber; Mehmet Toner
Journal:  Nat Methods       Date:  2015-05-18       Impact factor: 28.547

7.  A role for mesenchyme dynamics in mouse lung branching morphogenesis.

Authors:  Pierre Blanc; Karen Coste; Pierre Pouchin; Jean-Marc Azaïs; Loïc Blanchon; Denis Gallot; Vincent Sapin
Journal:  PLoS One       Date:  2012-07-23       Impact factor: 3.240

  7 in total

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