Literature DB >> 12480339

Computational modeling of the EGF-receptor system: a paradigm for systems biology.

H Steven Wiley1, Stanislav Y Shvartsman, Douglas A Lauffenburger.   

Abstract

Computational models have rarely been used as tools by biologists but, when models provide experimentally testable predictions, they can be extremely useful. The epidermal growth factor receptor (EGFR) is probably the best-understood receptor system, and computational models have played a significant part in its elucidation. For many years, models have been used to analyze EGFR dynamics and to interpret mutational studies, and are now being used to understand processes including signal transduction, autocrine loops and developmental patterning. The success of EGFR modeling can be a guide to combining models and experiments productively to understand complex biological processes as integrated systems.

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Year:  2003        PMID: 12480339     DOI: 10.1016/s0962-8924(02)00009-0

Source DB:  PubMed          Journal:  Trends Cell Biol        ISSN: 0962-8924            Impact factor:   20.808


  105 in total

Review 1.  Mathematical simulation of membrane protein clustering for efficient signal transduction.

Authors:  Krishnan Radhakrishnan; Ádám Halász; Meghan M McCabe; Jeremy S Edwards; Bridget S Wilson
Journal:  Ann Biomed Eng       Date:  2012-06-06       Impact factor: 3.934

2.  Stochastic model of autocrine and paracrine signals in cell culture assays.

Authors:  Lazaros Batsilas; Alexander M Berezhkovskii; Stanislav Y Shvartsman
Journal:  Biophys J       Date:  2003-12       Impact factor: 4.033

3.  The origin of dorsoventral polarity in Drosophila.

Authors:  Siegfried Roth
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2003-08-29       Impact factor: 6.237

4.  Discrete models of autocrine cell communication in epithelial layers.

Authors:  Michal Pribyl; Cyrill B Muratov; Stanislav Y Shvartsman
Journal:  Biophys J       Date:  2003-06       Impact factor: 4.033

5.  Mechanical control of spheroid growth: distinct morphogenetic regimes.

Authors:  Oswaldo A Lozoya; Sharon R Lubkin
Journal:  J Biomech       Date:  2011-12-06       Impact factor: 2.712

6.  Trafficking coordinate description of intracellular transport control of signaling networks.

Authors:  Jose M G Vilar; Leonor Saiz
Journal:  Biophys J       Date:  2011-11-15       Impact factor: 4.033

7.  A 3-D model of ligand transport in a deforming extracellular space.

Authors:  Nikola Kojić; Austin Huang; Euiheon Chung; Miloš Ivanović; Nenad Filipović; Miloš Kojić; Daniel J Tschumperlin
Journal:  Biophys J       Date:  2010-12-01       Impact factor: 4.033

Review 8.  Functional proteomics to dissect tyrosine kinase signalling pathways in cancer.

Authors:  Walter Kolch; Andrew Pitt
Journal:  Nat Rev Cancer       Date:  2010-08-19       Impact factor: 60.716

9.  Ligand accumulation in autocrine cell cultures.

Authors:  Michael I Monine; Alexander M Berezhkovskii; Elizabeth J Joslin; H Steven Wiley; Douglas A Lauffenburger; Stanislav Y Shvartsman
Journal:  Biophys J       Date:  2005-01-14       Impact factor: 4.033

10.  Systems biological analysis of epidermal growth factor receptor internalization dynamics for altered receptor levels.

Authors:  Hannah Schmidt-Glenewinkel; Eileen Reinz; Roland Eils; Nathan R Brady
Journal:  J Biol Chem       Date:  2009-03-17       Impact factor: 5.157

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