Literature DB >> 12015287

Modeling and computational analysis of EGF receptor-mediated cell communication in Drosophila oogenesis.

Stanislav Y Shvartsman1, Cyrill B Muratov, Douglas A Lauffenburger.   

Abstract

Autocrine signaling through the Epidermal Growth Factor Receptor (EGFR) operates at various stages of development across species. A recent hypothesis suggested that a distributed network of EGFR autocrine loops was capable of spatially modulating a simple single-peaked input into a more complex two-peaked signaling pattern, specifying the formation of a pair organ in Drosophila oogenesis (two respiratory appendages on the eggshell). To test this hypothesis, we have integrated genetic and biochemical information about the EGFR network into a mechanistic model of transport and signaling. The model allows us to estimate the relative spatial ranges and time scales of the relevant feedback loops, to interpret the phenotypic transitions in eggshell morphology and to predict the effects of new genetic manipulations. We have found that the proposed mechanism with a single diffusing inhibitor is sufficient to convert a single-peaked extracellular input into a two-peaked pattern of intracellular signaling. Based on extensive computational analysis, we predict that the same mechanism is capable of generating more complex patterns. At least indirectly, this can be used to account for more complex eggshell morphologies observed in related fly species. We propose that versatility in signaling mediated by autocrine loops can be systematically explored using experiment-based mechanistic models and their analysis.

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Year:  2002        PMID: 12015287     DOI: 10.1242/dev.129.11.2577

Source DB:  PubMed          Journal:  Development        ISSN: 0950-1991            Impact factor:   6.868


  34 in total

1.  The origin of dorsoventral polarity in Drosophila.

Authors:  Siegfried Roth
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2003-08-29       Impact factor: 6.237

2.  Discrete models of autocrine cell communication in epithelial layers.

Authors:  Michal Pribyl; Cyrill B Muratov; Stanislav Y Shvartsman
Journal:  Biophys J       Date:  2003-06       Impact factor: 4.033

3.  Limitations of quantitative gene regulation models: a case study.

Authors:  Philip M Kim; Bruce Tidor
Journal:  Genome Res       Date:  2003-11       Impact factor: 9.043

4.  A 3-D model of ligand transport in a deforming extracellular space.

Authors:  Nikola Kojić; Austin Huang; Euiheon Chung; Miloš Ivanović; Nenad Filipović; Miloš Kojić; Daniel J Tschumperlin
Journal:  Biophys J       Date:  2010-12-01       Impact factor: 4.033

Review 5.  Computational approaches for modeling regulatory cellular networks.

Authors:  Narat J Eungdamrong; Ravi Iyengar
Journal:  Trends Cell Biol       Date:  2004-12       Impact factor: 20.808

6.  Antagonistic regulation of Yan nuclear export by Mae and Crm1 may increase the stringency of the Ras response.

Authors:  Haiyun Song; Minghua Nie; Feng Qiao; James U Bowie; Albert J Courey
Journal:  Genes Dev       Date:  2005-07-18       Impact factor: 11.361

7.  Quantifying the Gurken morphogen gradient in Drosophila oogenesis.

Authors:  Lea A Goentoro; Gregory T Reeves; Craig P Kowal; Luigi Martinelli; Trudi Schüpbach; Stanislav Y Shvartsman
Journal:  Dev Cell       Date:  2006-08       Impact factor: 12.270

8.  Intercellular coupling amplifies fate segregation during Caenorhabditis elegans vulval development.

Authors:  Claudiu A Giurumescu; Paul W Sternberg; Anand R Asthagiri
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-23       Impact factor: 11.205

9.  Computational modeling of extracellular mechanotransduction.

Authors:  Nikola Kojić; Milos Kojić; Daniel J Tschumperlin
Journal:  Biophys J       Date:  2006-03-13       Impact factor: 4.033

Review 10.  Cell-signalling dynamics in time and space.

Authors:  Boris N Kholodenko
Journal:  Nat Rev Mol Cell Biol       Date:  2006-03       Impact factor: 94.444

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