Literature DB >> 21111023

When one is better than two: RNA with dual functions.

Damien Ulveling1, Claire Francastel, Florent Hubé.   

Abstract

The central dogma of biology, until not long ago, held that genetic information stored on DNA molecules was translated into the final protein products through RNA as intermediate molecules. Then, an additional level of complexity in the regulation of genome expression was added, implicating new classes of RNA molecules called non-coding RNA (ncRNA). These ncRNA are also often referred to as functional RNA in that, although they do not contain the capacity to encode proteins, do have a function as RNA molecules. They have been thus far considered as truly non-coding RNA since no ORF long enough to be considered, nor protein, have been associated with them. However, the recent identification and characterization of bifunctional RNA, i.e. RNA for which both coding capacity and activity as functional RNA have been reported, suggests that a definite categorization of some RNA molecules is far from being straightforward. Indeed, several RNA primarily classified as non-protein-coding RNA has been showed to hold coding capacities and associated peptides. Conversely, mRNA, usually regarded as strictly protein-coding, may act as functional RNA molecules. Here, we describe several examples of these bifunctional RNA that have been already characterized from bacteria to mammals. We also extend this concept to fortuitous acquisition of dual function in pathological conditions and to the recently highlighted duality between information carried by a gene and its pseudogenes counterparts.
Copyright © 2010 Elsevier Masson SAS. All rights reserved.

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Year:  2010        PMID: 21111023     DOI: 10.1016/j.biochi.2010.11.004

Source DB:  PubMed          Journal:  Biochimie        ISSN: 0300-9084            Impact factor:   4.079


  42 in total

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Review 2.  Unique features of long non-coding RNA biogenesis and function.

Authors:  Jeffrey J Quinn; Howard Y Chang
Journal:  Nat Rev Genet       Date:  2016-01       Impact factor: 53.242

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Authors:  Alan L Jiao; Frank J Slack
Journal:  Epigenetics       Date:  2013-11-01       Impact factor: 4.528

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Journal:  Nat Rev Mol Cell Biol       Date:  2017-03-08       Impact factor: 94.444

5.  Integrative classification of human coding and noncoding genes through RNA metabolism profiles.

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Journal:  Nat Struct Mol Biol       Date:  2016-11-21       Impact factor: 15.369

6.  Global and cell-type specific properties of lincRNAs with ribosome occupancy.

Authors:  Hongwei Wang; Yan Wang; Shangqian Xie; Yizhi Liu; Zhi Xie
Journal:  Nucleic Acids Res       Date:  2017-03-17       Impact factor: 16.971

7.  Computational analysis of functional long noncoding RNAs reveals lack of peptide-coding capacity and parallels with 3' UTRs.

Authors:  Farshad Niazi; Saba Valadkhan
Journal:  RNA       Date:  2012-02-23       Impact factor: 4.942

8.  A novel RNA motif mediates the strict nuclear localization of a long noncoding RNA.

Authors:  Bing Zhang; Lalith Gunawardane; Farshad Niazi; Fereshteh Jahanbani; Xin Chen; Saba Valadkhan
Journal:  Mol Cell Biol       Date:  2014-04-14       Impact factor: 4.272

Review 9.  LncRNAs, lost in translation or licence to regulate?

Authors:  Alvaro de Andres-Pablo; Antonin Morillon; Maxime Wery
Journal:  Curr Genet       Date:  2016-05-26       Impact factor: 3.886

10.  HDAC inhibition by SNDX-275 (Entinostat) restores expression of silenced leukemia-associated transcription factors Nur77 and Nor1 and of key pro-apoptotic proteins in AML.

Authors:  L Zhou; V R Ruvolo; T McQueen; W Chen; I J Samudio; O Conneely; M Konopleva; M Andreeff
Journal:  Leukemia       Date:  2012-12-18       Impact factor: 11.528

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