Literature DB >> 24185374

RNA-mediated gene activation.

Alan L Jiao1, Frank J Slack1.   

Abstract

The regulation of gene expression by non-coding RNAs (ncRNAs) has become a new paradigm in biology. RNA-mediated gene silencing pathways have been studied extensively, revealing diverse epigenetic and posttranscriptional mechanisms. In contrast, the roles of ncRNAs in activating gene expression remains poorly understood. In this review, we summarize the current knowledge of gene activation by small RNAs, long non-coding RNAs, and enhancer-derived RNAs, with an emphasis on epigenetic mechanisms.

Keywords:  RNAa; eRNA; enhancer; epigenetic; lincRNA; non-coding RNA; saRNA; transcriptional activation

Mesh:

Substances:

Year:  2013        PMID: 24185374      PMCID: PMC3928182          DOI: 10.4161/epi.26942

Source DB:  PubMed          Journal:  Epigenetics        ISSN: 1559-2294            Impact factor:   4.528


  90 in total

Review 1.  Biogenesis of small RNAs in animals.

Authors:  V Narry Kim; Jinju Han; Mikiko C Siomi
Journal:  Nat Rev Mol Cell Biol       Date:  2009-02       Impact factor: 94.444

Review 2.  A global view of genomic information--moving beyond the gene and the master regulator.

Authors:  John S Mattick; Ryan J Taft; Geoffrey J Faulkner
Journal:  Trends Genet       Date:  2009-11-26       Impact factor: 11.639

3.  MicroRNA-466l upregulates IL-10 expression in TLR-triggered macrophages by antagonizing RNA-binding protein tristetraprolin-mediated IL-10 mRNA degradation.

Authors:  Feng Ma; Xingguang Liu; Dong Li; Pin Wang; Nan Li; Liwei Lu; Xuetao Cao
Journal:  J Immunol       Date:  2010-04-21       Impact factor: 5.422

Review 4.  Origins and Mechanisms of miRNAs and siRNAs.

Authors:  Richard W Carthew; Erik J Sontheimer
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

5.  ChIP-seq accurately predicts tissue-specific activity of enhancers.

Authors:  Axel Visel; Matthew J Blow; Zirong Li; Tao Zhang; Jennifer A Akiyama; Amy Holt; Ingrid Plajzer-Frick; Malak Shoukry; Crystal Wright; Feng Chen; Veena Afzal; Bing Ren; Edward M Rubin; Len A Pennacchio
Journal:  Nature       Date:  2009-02-12       Impact factor: 49.962

Review 6.  The biogenesis and function of PIWI proteins and piRNAs: progress and prospect.

Authors:  Travis Thomson; Haifan Lin
Journal:  Annu Rev Cell Dev Biol       Date:  2009       Impact factor: 13.827

Review 7.  Long antisense non-coding RNAs function to direct epigenetic complexes that regulate transcription in human cells.

Authors:  Kevin V Morris
Journal:  Epigenetics       Date:  2009-07-17       Impact factor: 4.528

8.  Widespread transcription at neuronal activity-regulated enhancers.

Authors:  Tae-Kyung Kim; Martin Hemberg; Jesse M Gray; Allen M Costa; Daniel M Bear; Jing Wu; David A Harmin; Mike Laptewicz; Kellie Barbara-Haley; Scott Kuersten; Eirene Markenscoff-Papadimitriou; Dietmar Kuhl; Haruhiko Bito; Paul F Worley; Gabriel Kreiman; Michael E Greenberg
Journal:  Nature       Date:  2010-04-14       Impact factor: 49.962

9.  RNAa is conserved in mammalian cells.

Authors:  Vera Huang; Yi Qin; Ji Wang; Xiaoling Wang; Robert F Place; Guiting Lin; Tom F Lue; Long-Cheng Li
Journal:  PLoS One       Date:  2010-01-22       Impact factor: 3.240

10.  The Argonaute CSR-1 and its 22G-RNA cofactors are required for holocentric chromosome segregation.

Authors:  Julie M Claycomb; Pedro J Batista; Ka Ming Pang; Weifeng Gu; Jessica J Vasale; Josien C van Wolfswinkel; Daniel A Chaves; Masaki Shirayama; Shohei Mitani; René F Ketting; Darryl Conte; Craig C Mello
Journal:  Cell       Date:  2009-10-02       Impact factor: 41.582

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  27 in total

1.  Silent no more: Endogenous small RNA pathways promote gene expression.

Authors:  Christopher J Wedeles; Monica Z Wu; Julie M Claycomb
Journal:  Worm       Date:  2014-04-02

2.  Identification of miRNAs that modulate glucocerebrosidase activity in Gaucher disease cells.

Authors:  Marina Siebert; Wendy Westbroek; Yu-Chi Chen; Nima Moaven; Yan Li; Arash Velayati; Maria Luiza Saraiva-Pereira; Scott E Martin; Ellen Sidransky
Journal:  RNA Biol       Date:  2014       Impact factor: 4.652

Review 3.  A Macro View of MicroRNAs: The Discovery of MicroRNAs and Their Role in Hematopoiesis and Hematologic Disease.

Authors:  Cary N Weiss; Keisuke Ito
Journal:  Int Rev Cell Mol Biol       Date:  2017-04-21       Impact factor: 6.813

4.  Developmental Control of NRAMP1 (SLC11A1) Expression in Professional Phagocytes.

Authors:  Mathieu F M Cellier
Journal:  Biology (Basel)       Date:  2017-05-03

5.  A distal locus element mediates IFN-γ priming of lipopolysaccharide-stimulated TNF gene expression.

Authors:  Nancy A Chow; Luke D Jasenosky; Anne E Goldfeld
Journal:  Cell Rep       Date:  2014-12-04       Impact factor: 9.423

6.  RNA Activation of the Vascular Endothelial Growth Factor Gene (VEGF) Promoter by Double-Stranded RNA and Hypoxia: Role of Noncoding VEGF Promoter Transcripts.

Authors:  Pascal Lopez; Kay-Dietrich Wagner; Paul Hofman; Emmanuel Van Obberghen
Journal:  Mol Cell Biol       Date:  2016-05-02       Impact factor: 4.272

Review 7.  Regulatory RNAs and control of epigenetic mechanisms: expectations for cognition and cognitive dysfunction.

Authors:  Anderson A Butler; William M Webb; Farah D Lubin
Journal:  Epigenomics       Date:  2015-09-14       Impact factor: 4.778

Review 8.  Epigenetics of Aging and Alzheimer's Disease: Implications for Pharmacogenomics and Drug Response.

Authors:  Ramón Cacabelos; Clara Torrellas
Journal:  Int J Mol Sci       Date:  2015-12-21       Impact factor: 5.923

9.  S-phase kinase-associated protein 2 impairs the inhibitory effects of miR-1236-3p on bladder tumors.

Authors:  Qingsong Zhang; Shuo Miao; Chuanchang Li; Kai Cui; Qiangqiang Ge; Zhong Chen
Journal:  Am J Transl Res       Date:  2018-03-15       Impact factor: 4.060

10.  Global analysis of RNA-binding protein dynamics by comparative and enhanced RNA interactome capture.

Authors:  Joel I Perez-Perri; Marko Noerenberg; Wael Kamel; Caroline E Lenz; Shabaz Mohammed; Matthias W Hentze; Alfredo Castello
Journal:  Nat Protoc       Date:  2020-11-18       Impact factor: 13.491

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