Literature DB >> 12188756

Metastable intermediates in the condensation of semiflexible polymers.

B Schnurr1, F Gittes, F C MacKintosh.   

Abstract

Motivated by results from an earlier Brownian dynamics simulation for the collapse of a single, stiff polymer in a poor solvent [B. Schnurr, F. C. MacKintosh, and D. R. M. Williams, Europhys. Lett. 51, 279 (2000)] we calculate the conformational energies of the intermediate (racquet) states suggested by the simulations. In the absence of thermal fluctuations (at zero temperature) the annealed shapes of these intermediates are well-defined in certain limits, with their major structural elements given by a particular case of Euler's elastica. In appropriate units, a diagram emerges that displays the relative stability of all states, tori, and racquets. We conclude that, in marked contrast to the collapse of flexible polymers, the condensation of semiflexible or stiff polymers generically proceeds via a cascade through metastable intermediates, the racquets, towards a ground state, the torus or ring, as seen in the dynamical simulations.

Entities:  

Year:  2002        PMID: 12188756     DOI: 10.1103/PhysRevE.65.061904

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  7 in total

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5.  Simulating the entropic collapse of coarse-grained chromosomes.

Authors:  Tyler N Shendruk; Martin Bertrand; Hendrick W de Haan; James L Harden; Gary W Slater
Journal:  Biophys J       Date:  2015-02-17       Impact factor: 4.033

6.  Competition between supercoils and toroids in single molecule DNA condensation.

Authors:  David Argudo; Prashant K Purohit
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7.  Control of Stochastic and Induced Switching in Biophysical Networks.

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  7 in total

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