Literature DB >> 21107547

A look at arginine in membranes.

Kalina Hristova1, William C Wimley.   

Abstract

Here, we review the current knowledge about the energetics of arginine insertion into the bilayer hydrocarbon core, and we discuss discrepancies between experimental and computational studies of the insertion process. While simulations suggest that it should be very costly to place arginine into the hydrocarbon core, experiments show that arginine is found there. Both types of studies suggest that arginine insertion into the bilayer involves substantial bilayer deformation, with multiple hydrogen bonds between the arginine guanidinium group and lipid polar groups. It is possible that the discrepancies concerning the insertion cost of arginine arise because simulations overestimate the cost associated with bilayer deformation and underestimate the ability of the bilayer to adapt to charged and polar groups. This is an active area of research, and there is no doubt that a consensus view of arginine in membranes will soon emerge.

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Year:  2010        PMID: 21107547      PMCID: PMC3074250          DOI: 10.1007/s00232-010-9323-9

Source DB:  PubMed          Journal:  J Membr Biol        ISSN: 0022-2631            Impact factor:   1.843


  33 in total

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Review 2.  How membranes shape protein structure.

Authors:  S H White; A S Ladokhin; S Jayasinghe; K Hristova
Journal:  J Biol Chem       Date:  2001-06-29       Impact factor: 5.157

3.  A highly accurate statistical approach for the prediction of transmembrane beta-barrels.

Authors:  Thomas C Freeman; William C Wimley
Journal:  Bioinformatics       Date:  2010-06-10       Impact factor: 6.937

4.  X-ray structure of a voltage-dependent K+ channel.

Authors:  Youxing Jiang; Alice Lee; Jiayun Chen; Vanessa Ruta; Martine Cadene; Brian T Chait; Roderick MacKinnon
Journal:  Nature       Date:  2003-05-01       Impact factor: 49.962

5.  The principle of gating charge movement in a voltage-dependent K+ channel.

Authors:  Youxing Jiang; Vanessa Ruta; Jiayun Chen; Alice Lee; Roderick MacKinnon
Journal:  Nature       Date:  2003-05-01       Impact factor: 49.962

6.  Neuroscience. The puzzling portrait of a pore.

Authors:  Greg Miller
Journal:  Science       Date:  2003-06-27       Impact factor: 47.728

7.  Multidimensional signatures in antimicrobial peptides.

Authors:  Nannette Y Yount; Michael R Yeaman
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-26       Impact factor: 11.205

Review 8.  The versatile beta-barrel membrane protein.

Authors:  William C Wimley
Journal:  Curr Opin Struct Biol       Date:  2003-08       Impact factor: 6.809

9.  Energy of an ion crossing a low dielectric membrane: solutions to four relevant electrostatic problems.

Authors:  A Parsegian
Journal:  Nature       Date:  1969-03-01       Impact factor: 49.962

10.  Affinities of amino acid side chains for solvent water.

Authors:  R Wolfenden; L Andersson; P M Cullis; C C Southgate
Journal:  Biochemistry       Date:  1981-02-17       Impact factor: 3.162

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  39 in total

1.  Determination of membrane-insertion free energies by molecular dynamics simulations.

Authors:  James Gumbart; Benoît Roux
Journal:  Biophys J       Date:  2012-02-21       Impact factor: 4.033

2.  A membrane-translocating peptide penetrates into bilayers without significant bilayer perturbations.

Authors:  Juan Cruz; Mihaela Mihailescu; Greg Wiedman; Katherine Herman; Peter C Searson; William C Wimley; Kalina Hristova
Journal:  Biophys J       Date:  2013-06-04       Impact factor: 4.033

3.  A peptide for transcellular cargo delivery: Structure-function relationship and mechanism of action.

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Review 4.  Marginally hydrophobic transmembrane α-helices shaping membrane protein folding.

Authors:  Minttu T De Marothy; Arne Elofsson
Journal:  Protein Sci       Date:  2015-05-30       Impact factor: 6.725

5.  Membrane interactions and pore formation by the antimicrobial peptide protegrin.

Authors:  Themis Lazaridis; Yi He; Lidia Prieto
Journal:  Biophys J       Date:  2013-02-05       Impact factor: 4.033

6.  Influence of Lipid Saturation, Hydrophobic Length and Cholesterol on Double-Arginine-Containing Helical Peptides in Bilayer Membranes.

Authors:  Karli Lipinski; Matthew J McKay; Fahmida Afrose; Ashley N Martfeld; Roger E Koeppe; Denise V Greathouse
Journal:  Chembiochem       Date:  2019-09-18       Impact factor: 3.164

Review 7.  Computational studies of membrane proteins: models and predictions for biological understanding.

Authors:  Jie Liang; Hammad Naveed; David Jimenez-Morales; Larisa Adamian; Meishan Lin
Journal:  Biochim Biophys Acta       Date:  2011-10-12

8.  Folding of Aquaporin 1: multiple evidence that helix 3 can shift out of the membrane core.

Authors:  Minttu T Virkki; Nitin Agrawal; Elin Edsbäcker; Susana Cristobal; Arne Elofsson; Anni Kauko
Journal:  Protein Sci       Date:  2014-05-14       Impact factor: 6.725

9.  Implicit membrane treatment of buried charged groups: application to peptide translocation across lipid bilayers.

Authors:  Themis Lazaridis; John M Leveritt; Leo PeBenito
Journal:  Biochim Biophys Acta       Date:  2014-02-10

10.  Buried lysine, but not arginine, titrates and alters transmembrane helix tilt.

Authors:  Nicholas J Gleason; Vitaly V Vostrikov; Denise V Greathouse; Roger E Koeppe
Journal:  Proc Natl Acad Sci U S A       Date:  2013-01-14       Impact factor: 11.205

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