Literature DB >> 23319623

Buried lysine, but not arginine, titrates and alters transmembrane helix tilt.

Nicholas J Gleason1, Vitaly V Vostrikov, Denise V Greathouse, Roger E Koeppe.   

Abstract

The ionization states of individual amino acid residues of membrane proteins are difficult to decipher or assign directly in the lipid-bilayer membrane environment. We address this issue for lysines and arginines in designed transmembrane helices. For lysines (but not arginines) at two locations within dioleoyl-phosphatidylcholine bilayer membranes, we measure pK(a) values below 7.0. We find that buried charged lysine, in fashion similar to arginine, will modulate helix orientation to maximize its own access to the aqueous interface or, if occluded by aromatic rings, may cause a transmembrane helix to exit the lipid bilayer. Interestingly, the influence of neutral lysine (vis-à-vis leucine) upon helix orientation also depends upon its aqueous access. Our results suggest that changes in the ionization states of particular residues will regulate membrane protein function and furthermore illustrate the subtle complexity of ionization behavior with respect to the detailed lipid and protein environment.

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Year:  2013        PMID: 23319623      PMCID: PMC3562795          DOI: 10.1073/pnas.1215400110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  31 in total

1.  The principle of gating charge movement in a voltage-dependent K+ channel.

Authors:  Youxing Jiang; Vanessa Ruta; Jiayun Chen; Alice Lee; Roderick MacKinnon
Journal:  Nature       Date:  2003-05-01       Impact factor: 49.962

2.  Recognition of transmembrane helices by the endoplasmic reticulum translocon.

Authors:  Tara Hessa; Hyun Kim; Karl Bihlmaier; Carolina Lundin; Jorrit Boekel; Helena Andersson; Ingmarie Nilsson; Stephen H White; Gunnar von Heijne
Journal:  Nature       Date:  2005-01-27       Impact factor: 49.962

3.  Non-random distribution of amino acids in the transmembrane segments of human type I single span membrane proteins.

Authors:  C Landolt-Marticorena; K A Williams; C M Deber; R A Reithmeier
Journal:  J Mol Biol       Date:  1993-02-05       Impact factor: 5.469

4.  Gating charge interactions with the S1 segment during activation of a Na+ channel voltage sensor.

Authors:  Paul G DeCaen; Vladimir Yarov-Yarovoy; Todd Scheuer; William A Catterall
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-31       Impact factor: 11.205

5.  Different membrane anchoring positions of tryptophan and lysine in synthetic transmembrane alpha-helical peptides.

Authors:  M R de Planque; J A Kruijtzer; R M Liskamp; D Marsh; D V Greathouse; R E Koeppe; B de Kruijff; J A Killian
Journal:  J Biol Chem       Date:  1999-07-23       Impact factor: 5.157

6.  Large shifts in pKa values of lysine residues buried inside a protein.

Authors:  Daniel G Isom; Carlos A Castañeda; Brian R Cannon; Bertrand García-Moreno
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-09       Impact factor: 11.205

7.  Geometry and intrinsic tilt of a tryptophan-anchored transmembrane alpha-helix determined by (2)H NMR.

Authors:  Patrick C A van der Wel; Erik Strandberg; J Antoinette Killian; Roger E Koeppe
Journal:  Biophys J       Date:  2002-09       Impact factor: 4.033

8.  Position and ionization state of Asp in the core of membrane-inserted alpha helices control both the equilibrium between transmembrane and nontransmembrane helix topography and transmembrane helix positioning.

Authors:  Gregory A Caputo; Erwin London
Journal:  Biochemistry       Date:  2004-07-13       Impact factor: 3.162

Review 9.  Arginine in membranes: the connection between molecular dynamics simulations and translocon-mediated insertion experiments.

Authors:  Eric V Schow; J Alfredo Freites; Philip C. Myint; Andreas Bernsel; Gunnar von Heijne; Stephen H White; Douglas J Tobias
Journal:  J Membr Biol       Date:  2010-12-03       Impact factor: 1.843

10.  Tunable pKa values and the basis of opposite charge selectivities in nicotinic-type receptors.

Authors:  Gisela D Cymes; Claudio Grosman
Journal:  Nature       Date:  2011-05-22       Impact factor: 49.962

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  41 in total

1.  Membrane-Induced p Ka Shifts in wt-pHLIP and Its L16H Variant.

Authors:  Diogo Vila-Viçosa; Tomás F D Silva; Gregory Slaybaugh; Yana K Reshetnyak; Oleg A Andreev; Miguel Machuqueiro
Journal:  J Chem Theory Comput       Date:  2018-05-17       Impact factor: 6.006

2.  Fluorescamine Labeling for Assessment of Protein Conformational Change and Binding Affinity in Protein-Nanoparticle Interaction.

Authors:  Yaokai Duan; Yang Liu; Wen Shen; Wenwan Zhong
Journal:  Anal Chem       Date:  2017-11-08       Impact factor: 6.986

3.  Membrane permeation of a peptide: it is better to be positive.

Authors:  Alfredo E Cardenas; Rebika Shrestha; Lauren J Webb; Ron Elber
Journal:  J Phys Chem B       Date:  2015-05-13       Impact factor: 2.991

4.  Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance.

Authors:  Giray Enkavi; Matti Javanainen; Waldemar Kulig; Tomasz Róg; Ilpo Vattulainen
Journal:  Chem Rev       Date:  2019-03-12       Impact factor: 60.622

5.  Sensitivity enhancement for membrane proteins reconstituted in parallel and perpendicular oriented bicelles obtained by using repetitive cross-polarization and membrane-incorporated free radicals.

Authors:  Sophie N Koroloff; Deanna M Tesch; Emmanuel O Awosanya; Alexander A Nevzorov
Journal:  J Biomol NMR       Date:  2017-02-15       Impact factor: 2.835

6.  Nanotube array method for studying lipid-induced conformational changes of a membrane protein by solid-state NMR.

Authors:  Antonin Marek; Wenxing Tang; Sergey Milikisiyants; Alexander A Nevzorov; Alex I Smirnov
Journal:  Biophys J       Date:  2015-01-06       Impact factor: 4.033

7.  Influence of Lipid Saturation, Hydrophobic Length and Cholesterol on Double-Arginine-Containing Helical Peptides in Bilayer Membranes.

Authors:  Karli Lipinski; Matthew J McKay; Fahmida Afrose; Ashley N Martfeld; Roger E Koeppe; Denise V Greathouse
Journal:  Chembiochem       Date:  2019-09-18       Impact factor: 3.164

8.  Implicit membrane treatment of buried charged groups: application to peptide translocation across lipid bilayers.

Authors:  Themis Lazaridis; John M Leveritt; Leo PeBenito
Journal:  Biochim Biophys Acta       Date:  2014-02-10

9.  Specific Binding of Cholesterol to C99 Domain of Amyloid Precursor Protein Depends Critically on Charge State of Protein.

Authors:  Afra Panahi; Asanga Bandara; George A Pantelopulos; Laura Dominguez; John E Straub
Journal:  J Phys Chem Lett       Date:  2016-08-26       Impact factor: 6.475

10.  Ionization Properties of Histidine Residues in the Lipid Bilayer Membrane Environment.

Authors:  Ashley N Martfeld; Denise V Greathouse; Roger E Koeppe
Journal:  J Biol Chem       Date:  2016-07-20       Impact factor: 5.157

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