Literature DB >> 21106752

Seeing the portal in herpes simplex virus type 1 B capsids.

R H Rochat1, X Liu, K Murata, K Nagayama, F J Rixon, W Chiu.   

Abstract

Resolving the nonicosahedral components in large icosahedral viruses remains a technical challenge in structural virology. We have used the emerging technique of Zernike phase-contrast electron cryomicroscopy to enhance the image contrast of ice-embedded herpes simplex virus type 1 capsids. Image reconstruction enabled us to retrieve the structure of the unique portal vertex in the context of the icosahedral capsid and, for the first time, show the subunit organization of a portal in a virus infecting eukaryotes. Our map unequivocally resolves the 12-subunit portal situated beneath one of the pentameric vertices, thus removing uncertainty over the location and stoichiometry of the herpesvirus portal.

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Year:  2010        PMID: 21106752      PMCID: PMC3028901          DOI: 10.1128/JVI.01663-10

Source DB:  PubMed          Journal:  J Virol        ISSN: 0022-538X            Impact factor:   5.103


  19 in total

1.  Transmission electron microscopy with Zernike phase plate.

Authors:  R Danev; K Nagayama
Journal:  Ultramicroscopy       Date:  2001-09       Impact factor: 2.689

2.  Structure and polymorphism of the UL6 portal protein of herpes simplex virus type 1.

Authors:  Benes L Trus; Naiqian Cheng; William W Newcomb; Fred L Homa; Jay C Brown; Alasdair C Steven
Journal:  J Virol       Date:  2004-11       Impact factor: 5.103

3.  EMAN2: an extensible image processing suite for electron microscopy.

Authors:  Guang Tang; Liwei Peng; Philip R Baldwin; Deepinder S Mann; Wen Jiang; Ian Rees; Steven J Ludtke
Journal:  J Struct Biol       Date:  2006-06-08       Impact factor: 2.867

4.  Cryo-EM asymmetric reconstruction of bacteriophage P22 reveals organization of its DNA packaging and infecting machinery.

Authors:  Juan Chang; Peter Weigele; Jonathan King; Wah Chiu; Wen Jiang
Journal:  Structure       Date:  2006-05-25       Impact factor: 5.006

5.  Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm.

Authors:  Xiangan Liu; Wen Jiang; Joanita Jakana; Wah Chiu
Journal:  J Struct Biol       Date:  2007-07-06       Impact factor: 2.867

6.  Zernike phase contrast cryo-electron microscopy and tomography for structure determination at nanometer and subnanometer resolutions.

Authors:  Kazuyoshi Murata; Xiangan Liu; Radostin Danev; Joanita Jakana; Michael F Schmid; Jonathan King; Kuniaki Nagayama; Wah Chiu
Journal:  Structure       Date:  2010-08-11       Impact factor: 5.006

Review 7.  HSV molecular biology: general aspects of herpes simplex virus molecular biology.

Authors:  J H Subak-Sharpe; D J Dargan
Journal:  Virus Genes       Date:  1998       Impact factor: 2.332

8.  Practical factors affecting the performance of a thin-film phase plate for transmission electron microscopy.

Authors:  Radostin Danev; Robert M Glaeser; Kuniaki Nagayama
Journal:  Ultramicroscopy       Date:  2008-12-11       Impact factor: 2.689

9.  Electron cryotomography reveals the portal in the herpesvirus capsid.

Authors:  Juan T Chang; Michael F Schmid; Frazer J Rixon; Wah Chiu
Journal:  J Virol       Date:  2006-12-06       Impact factor: 5.103

10.  Differing roles of inner tegument proteins pUL36 and pUL37 during entry of herpes simplex virus type 1.

Authors:  Ashley P E Roberts; Fernando Abaitua; Peter O'Hare; David McNab; Frazer J Rixon; David Pasdeloup
Journal:  J Virol       Date:  2008-10-29       Impact factor: 5.103

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  36 in total

Review 1.  Procapsid assembly, maturation, nuclear exit: dynamic steps in the production of infectious herpesvirions.

Authors:  Giovanni Cardone; J Bernard Heymann; Naiqian Cheng; Benes L Trus; Alasdair C Steven
Journal:  Adv Exp Med Biol       Date:  2012       Impact factor: 2.622

2.  Methods for testing Zernike phase plates and a report on silicon-based phase plates with reduced charging and improved ageing characteristics.

Authors:  Michael Marko; Xing Meng; Chyongere Hsieh; James Roussie; Christopher Striemer
Journal:  J Struct Biol       Date:  2013-08-28       Impact factor: 2.867

Review 3.  Invited review article: Methods for imaging weak-phase objects in electron microscopy.

Authors:  Robert M Glaeser
Journal:  Rev Sci Instrum       Date:  2013-11       Impact factor: 1.523

4.  CryoEM and mutagenesis reveal that the smallest capsid protein cements and stabilizes Kaposi's sarcoma-associated herpesvirus capsid.

Authors:  Xinghong Dai; Danyang Gong; Yuchen Xiao; Ting-Ting Wu; Ren Sun; Z Hong Zhou
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-02       Impact factor: 11.205

5.  Volta potential phase plate for in-focus phase contrast transmission electron microscopy.

Authors:  Radostin Danev; Bart Buijsse; Maryam Khoshouei; Jürgen M Plitzko; Wolfgang Baumeister
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-20       Impact factor: 11.205

6.  Association of herpes simplex virus pUL31 with capsid vertices and components of the capsid vertex-specific complex.

Authors:  Kui Yang; Elizabeth Wills; Han Young Lim; Z Hong Zhou; Joel D Baines
Journal:  J Virol       Date:  2014-01-22       Impact factor: 5.103

7.  Visualizing Individual RuBisCO and Its Assembly into Carboxysomes in Marine Cyanobacteria by Cryo-Electron Tomography.

Authors:  Wei Dai; Muyuan Chen; Christopher Myers; Steven J Ludtke; B Montgomery Pettitt; Jonathan A King; Michael F Schmid; Wah Chiu
Journal:  J Mol Biol       Date:  2018-08-20       Impact factor: 5.469

8.  Biophysical Reviews' "Meet the Editors Series"-a profile of Kuniaki Nagayama: encounters and leaps in a transborder journey through biophysics.

Authors:  Kuniaki Nagayama
Journal:  Biophys Rev       Date:  2020-04

Review 9.  Update on emerging antivirals for the management of herpes simplex virus infections: a patenting perspective.

Authors:  Aswani D Vadlapudi; Ramya K Vadlapatla; Ashim K Mitra
Journal:  Recent Pat Antiinfect Drug Discov       Date:  2013-04

10.  Effect of fringe-artifact correction on sub-tomogram averaging from Zernike phase-plate cryo-TEM.

Authors:  Gregory P Kishchenko; Radostin Danev; Rebecca Fisher; Jie He; Chyongere Hsieh; Michael Marko; Haixin Sui
Journal:  J Struct Biol       Date:  2015-07-22       Impact factor: 2.867

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