In the present work, we employ excited state accelerated ab initio molecular dynamics (A-AIMD) to efficiently study the excited state energy landscape and photophysical topology of a variety of molecular systems. In particular, we focus on two important challenges for the modeling of excited electronic states: (i) the identification and characterization of conical intersections and crossing seams, in order to predict different and often competing radiationless decay mechanisms, and (ii) the description of the solvent effect on the absorption and emission spectra of chemical species in solution. In particular, using as examples the Schiff bases formaldimine and salicylidenaniline, we show that A-AIMD can be readily employed to explore the conformational space around crossing seams in molecular systems with very different photochemistry. Using acetone in water as an example, we demonstrate that the enhanced configurational space sampling may be used to accurately and efficiently describe both the prominent features and line-shapes of absorption and emission spectra.
In the present work, we employ excited state accelerated ab initio molecular dynamics (A-AIMD) to efficiently study the excited state energy landscape and photophysical topology of a variety of molecular systems. In particular, we focus on two important challenges for the modeling of excited electronic states: (i) the identification and characterization of conical intersections and crossing seams, in order to predict different and often competing radiationless decay mechanisms, and (ii) the description of the solvent effect on the absorption and emission spectra of chemical species in solution. In particular, using as examples the Schiff basesformaldimine and salicylidenaniline, we show that A-AIMD can be readily employed to explore the conformational space around crossing seams in molecular systems with very different photochemistry. Using acetone in water as an example, we demonstrate that the enhanced configurational space sampling may be used to accurately and efficiently describe both the prominent features and line-shapes of absorption and emission spectra.
Electronically excited states play a prominent
role in many different
areas of chemical and condensed matter physics and organicchemistry.[1,2] While nonadiabatic processes, such as irradiation induced DNA damage
and repair mechanisms,[3,4] are the hallmark of photochemical
and photobiological reactions, the fluorescent properties of excited
state systems are increasingly being employed as biomolecular probes.[5,6] Despite their obvious importance, a detailed investigation of the
excited state remains a challenge to experimentalists and theoreticians
alike. Recent developments in laser chemistry have afforded significant
advances in the study of light-induced dynamic phenomena.[7] However, due to the short excited state lifetime,
the information obtained from such experiments is limited to a very
small region of the excited state energy landscape. For those systems
exhibiting longer excited state lifetimes, the interpretation of emission
spectra is complicated by the fact that a detailed configurational
representation of the experimental data requires knowledge of both
the excited state and ground state energy surfaces. From a theoretical
perspective, the accurate and proper computation of the excited state
polyelectronic wave function is a decisive step to obtaining an accurate
representation of the photophysical properties of the system at hand.
In light of this, a variety of post-Hartree–Fock methods including
coupled cluster, configuration interaction,[8] and multiconfigurational self-consistent field theory[9] have been developed. In comparison to the ground state
analogue, a single Slater determinant is no longer appropriate to
describe the excited state wave function, and a multiconfigurational
description is required. Due to the intensive CPU time and large memory
requirements, the above methods are often limited to “static”
single point energy calculations for small molecular systems. The
advent of approximate density-functional theory (DFT)-based methods
for the calculation of the excited state wave function, such as restricted
open-shell Kohn–Sham (ROKS)[10] theory
and, more recently, time-dependent DFT,[11] has facilitated the development of efficient excited-state ab initio molecular dynamics (AIMD) simulations. Such AIMD
simulations are readily employed to study the detailed molecular motions
of small isolated molecules and complex systems in the excited state.
Nevertheless, despite the substantial increase in available computational
resources and the development of more efficient simulation algorithms,
such as the
well-known Car–Parrinello approach,[12] AIMD simulations are generally limited to time-scales of tens to
hundreds of picoseconds. This is often too short to fully sample the
ground and excited state surfaces.Recently, we implemented
the accelerated molecular dynamics method[13] (AMD) in the framework of ab initio molecular dynamics.[14,15] Accelerated ab initio molecular dynamics, A-AIMD,
represents a highly efficient and robust
configurational space sampling method that allows for the study of
slow molecular motions and rare events. A-AIMD has successfully been
applied to study both slow conformational transitions and chemical
reactions in the ground state[14,15] occurring on time scales
many orders of magnitude longer than those accessible using standard
AIMD methods. In the present work, we extend the application of A-AIMD
to the study of excited state systems and their photophysical properties.
We first demonstrate that A-AIMD can be readily implemented as an
efficient tool for studying the excited state energy surface, identifying
both stable and metastable local energy minima and quantifying the
magnitude of the associated energy barriers that separate these states.
We then demonstrate how the excited state A-AIMD method can be used
to efficiently map out the photophysical topology of the system of
interest (i.e., characterizing the variation in the vertical de-excitation
energy gap as a function of the relevant internal degrees of freedom
of the system). This information provides a detailed insight into
the photophysical properties of the system, allowing the prediction
of both excited state reactions and relaxation phenomena.The
work presented in this paper is divided into two sections:
In the first section, we focus on systems exhibiting fast radiationless
decay processes, focusing on the identification of conical intersections
(CIs) and extended crossing seams. In the second section, we demonstrate
how A-AIMD can be used to describe the thermally averaged solvent
effect on the fluorescence spectra of molecular systems, most notably
making use of the enhanced configurational space sampling obtained
by A-AIMD to accurately describe both the prominent features and line-shapes
of absorption and emission spectra.
Radiationless Decay Process: Identification
and Characterization of Extended Crossing Seams and Conical Intersection
Extended crossing seams are sets of molecular geometries where
the energy of two electronic states varies, preserving their degeneracy.
Among this collection of points, those presenting nonvanishing diabaticcouplings[16] are known as conical intersections
(CIs), which play an important role in photochemistry[17−19] and photobiology.[20−23] CIs control the deactivation pathway of the electronically excited
system back to the ground state. As very little information about
CIs can be inferred directly from experimental data, this is clearly
one area of research where theory can provide unprecedented information
to complement experimental studies, providing answers to important
chemical and biochemical questions. The last 20 years has seen considerable
progress in the development of new algorithms for localizing CIs algorithms.
Traditionally, three methods have been employed: (i) Lagrange–Newton methods that minimize a Lagrangian in the
presence of constraints that act to maintain the degeneracy of the
electronic states,[24−26] (ii) gradient projection based techniques,[27−29] and (iii) penalty function-based methods.[30] A comparative analysis of these approaches has
recently been presented by Thiel et al.[31] However, these procedures are primarily designed for locating single
optimized molecular structures, known as minimum energy crossing points
(MECPs).[16] However, the location and identification
of CIs with these standard methods becomes very challenging when multiple
MECPs are required to properly describe the intersection space relevant
to the photochemical landscape of interest. More recently, a variety
of computational approaches have been developed to address this problem,
providing a more rigorous exploration of the conformational subspace
around the CI, including the identification of extended conical intersection
seams based on the definition of reaction coordinates,[26,32,33] or by direct search without the
need of any guess.[34] In the present work,
we introduce an alternative direct search approach for the efficient
exploration of CIs and extended crossing seams based on an enhanced
configurational space sampling method, A-AIMD, which complements previous
methods. Using two well-studied small molecular systems, the Schiff
bases fomaldimine (FD)[35] and salicyclideneanile
(SA),[36] we demonstrate how the efficient
and robust enhanced configurational space sampling afforded by the
accelerated molecular dynamics approach in the excited state allows
for a full characterization of the excited state surface and the photophysical
topology of these two systems, including the rapid identification
of CIs and extended crossing seams on the (adiabatic) excited state
potential energy surface.
Theory and Computational Details
Accelerated ab Intio Molecular
Dynamics
A comprehensive account of the accelerated ab initio molecular dynamics (A-AIMD) approach is available
in the literature,[14,15] and we only provide a brief outline
of the essential details here. In the standard AMD formalism,[13] a continuous non-negative bias potential, ΔV(r), is defined such that when the true
(underlying) potential of the system, V(r), lies below a certain, predefined threshold “boost”
energy, Eb, the simulation is performed
on a modified potential, V*(r) = V(r) + ΔV(r), but when V(r) ≥ Eb, the simulation is performed on the true potential
[V*(r) = V(r)]. The modified potential, V*(r), is related to the true potential, V(r), bias potential, ΔV(r), and boost energy, Eb, by[13]and the bias potential, ΔV(), is defined as:In the framework of AIMD, the true potential, V(r), is defined as the density functional
energy. The application of the bias potential results in a raising
and flattening of the PES, thus enhancing the exchange rate between
low energy states. The extent of acceleration (i.e., how aggressively
we enhance the configurational space sampling) is determined by the
choice of the boost energy, Eb, and the
acceleration parameter, α. Configurational space sampling can
be enhanced by either increasing the boost energy or decreasing α.
The reader is referred to ref (13) for more details.
Obtaining Accurate Free Energy Surfaces Using
A-AIMD
As the bias potential destabilizes low energy regions
of conformational space on the potential energy landscape, the population
statistics on the modified potential are inherently incorrect. However,
as it is known at each step in the simulation exactly how much the
system is destabilized, one can readily retrieve the correct population
statistics by reweighting each point in the configuration space on
the modified potential by the strength of the Boltzmann factor of
the bias energy, exp[βΔV(r)], at that particular point. As a result, A-AIMD yields a canonical
average of an observable such that thermodynamic and other equilibrium
properties can be accurately determined.Using the canonical
Boltzmann reweighting formulism described above, representative free
energy surfaces for the system of interest can be obtained as follows:
Having defined an appropriate set of internal degrees of freedom (see
the Results and Discussions section for specific
details), the configurational subspace is divided into bins, and the
structures collected across the A-AIMD trajectories are allocated
to their respective bin (j). The effective population
statistic for each structure, i, is given by exp[βΔV(i)]. For each bin, the population statistics
are summed across all A-AIMD trajectories to give an effective total
population in that bin, pop(j), and the free energy
surface, ΔG(j), is obtained
aswhere pop(j)max is the effective total population of the most populated bin.In the case of FD, we show that the ground and excited state free
energy surfaces obtained from the A-AIMD simulations are directly
compared to a metadynamics[37] reference
(see the Computational Details section).
Mapping out the Photophysical Topology
Having efficiently and exhaustively sampled the configurational space
of the molecular system of interest in the excited state, the photophysical
topology of the system was mapped out by identifying the appropriate
internal degrees of freedom and dividing this configurational subspace
into bins. Each structure in the A-AIMD simulations was then allocated
to a given bin. Given the large number of structures obtained from
the A-AIMD trajectories, 10 structures in each bin were randomly chosen,
and a ground state energy calculation was performed. The vertical
de-excitation energy gap associated with each bin was then averaged
over the 10 representative structures. The specific internal degrees
of freedom used for each system are defined explicitly in the Results and Discussions section.
Computational Details
All molecular
dynamics simulations were performed using an in-house modified version
of the AIMD 3.13 package.[38] In the case
of formaldimine (FD), the system was placed at the center of an orthorhombic
box with side lengths (17.6 × 18.3 × 14.0 au3). Similarly, for salicylidenaniline (SA), the system was placed
at the center of a box with side lengths (22.9 × 35.6 ×
14.0 au3). In all ground state (S0) simulations,
the electronic structure problem was solved with density functional
theory (DFT), and the restricted open-shell Kohn–Sham (ROKS)
method was implemented for simulations in the singlet (S1) excited state. For all systems, the Becke (B) exchange[39] and Lee, Yang, Parr correlation functional[40] were employed. Core electrons were treated using
the norm-conserving pseudopotentials of Troullier and Martins, and
the valence orbitals were expanded in a plane-wave basis up to an
energy cutoff of 70 Ry. In all ground and excited state (accelerated
and nonaccelerated) simulations, a fictitious mass of 400 au was ascribed
to the electronic degrees of freedom, and the coupled equations of
motion were solved using the velocity Verlet algorithm with a time
step of 4 au. All AIMD simulations (accelerated and nonaccelerated)
were carried out at T = 300 K. Standard AIMD simulations
were performed using a Nosé–Hoover chain thermostat[41] on the ions, while in the case of the accelerated
AIMD simulations, a Nosé–Hoover thermostat was applied
to both the electronic and nuclear degrees of freedom.The ground
and excited state metadynamics[37] simulations
used for comparative analysis in the FD study (see Results and Discussions) were performed under exactly the
same physical conditions as the standard AIMD simulations described
above. The angular and torsional coordinates (θ,ϕ) were
employed as the collective variables. Metadynamics trajectories were
run for 1 000 000 MD steps (∼100 ps) and Gaussian
hills with a half-width of 2.5° and a depth of 0.2 kcal/mol were
added every 200 MD steps.Before proceeding to the Results and Discussions section, it should be noted that there
are several limitations to
the method presented in this work: First, it is clear that the accuracy
of the relevant excited state free energy surfaces and photophysical
topologies, including the identified CIs and extended conical intersection
seams, is strongly dependent on the integrity of the employed polyelectronic
wave function representation. In the present examples, we have used
the restricted open-shell Kohn–Sham (ROKS) method to describe
the excited state. The enhanced configurational space sampling afforded
by A-AIMD obviously does not have any effect on the accuracy of the
polyelectronic wave function representation, and, as in all cases
when using DFT-based methods, it is important to validate the results
using more sophisticated post-Hartree–Fock methods (see Introduction). Indeed, we would like to point out
that for the two systems investigated here, FD and SA, the accuracy
of the ROKS approach has already been validated by comparison to more
sophisticated multireference configuration interaction methods.[36,42,43] Second, the excited state A-AIMD
trajectories presented here are strictly performed under adiabaticconditions, and therefore explore the adiabatic excited
state energy surface. As a result, the excited state populations and
the corresponding free energies in the absence of relaxation are only
approximations that do not have a direct physical meaning. In addition,
no direct information is obtained concerning the specific dynamic
processes that occur after vertical excitation that drive the system
toward the conical intersection. Nevertheless, A-AIMD simulations
provide important information about the topology of the excited and
ground state surfaces and allow converged sampling of both surfaces.
Finally, it is also well-known that radiationless decay processes
occur not only close to the crossing seam, where the energy gap between
the intersecting states is small, but also in regions of configurational
space away from it.[3,44,45] For these cases, a variety of theoretical approaches, such as the
method of fewest switches (MFS),[46] which
involve the calculation of a transition probability between the relevant
electronic states have been developed to address such relaxation mechanisms.
With specific regard to the MSF approach, the transition probability
is strongly dependent on the temporal velocity of the wave function,
and as the evolution of the system in A-AIMD occurs on a nonlinear
time scale, the application of such methods is beyond the scope of
the present study.
Results and Discussions
Conical Intersections and Photoisomerization
in Formaldimine
Formaldimine (FD), the smallest unprotonated
Schiff base, is the prototypical system for studying cis–trans photoisomerization around a double
bond. The photophysical properties and associated nonadiabatic photoisomerization
mechanism for this system have been rigorously studied using both
nonadiabatic ab initio MD[35] and high-level
“static” multireference configuration interaction (MRCI)
calculations.[42,43] In the ground state, S0, FD adopts a planar geometry as depicted in Figure 1a. After vertical excitation to the lowest excited singlet
state, S1, the system rapidly relaxes toward the local
energy minimum on the excited state PES and the N–H bond vector
twists out of the molecular plane. On approaching the orthogonal twist
geometry, the system enters the CI region resulting in strong nonadiabaticcoupling between the S1 and S0 states. After
a surface hop from the S1 to the S0 state, FD
returns to a planar geometry, leading either to the photoisomerized
product or to the regeneration of the reactant state (see Figure 1b).
Figure 1
(a) Molecular structures of the two isomeric forms of
formaldimine.
The degrees of freedom ϕ and θ discussed in this work
are indicated. (b) Scheme representing the photoreaction pathways
of formaldimine. (c) Molecular structures of the two tautomeric forms
of salicylideneaniline. The degrees of freedom (ω1,r1) and (ω2,r2) discussed in this work are indicated (dihedral
angles highlighted in red). (d) Scheme representing the photochemical
landscape of salicylideneaniline, including the ESIPT and the nonadiabatic
pathways.
(a) Molecular structures of the two isomeric forms of
formaldimine.
The degrees of freedom ϕ and θ discussed in this work
are indicated. (b) Scheme representing the photoreaction pathways
of formaldimine. (c) Molecular structures of the two tautomeric forms
of salicylideneaniline. The degrees of freedom (ω1,r1) and (ω2,r2) discussed in this work are indicated (dihedral
angles highlighted in red). (d) Scheme representing the photochemical
landscape of salicylideneaniline, including the ESIPT and the nonadiabatic
pathways.In order to study the configurational space sampling
properties
of FD, a multiple-copy ab initio MD simulation strategy
was employed: After performing a standard geometry optimization and
equilibration procedure, five independent AIMD simulations were performed
for 500 000 MD steps (the equivalent of ∼50 ps) at 300
K in both the ground and excited state. Analysis of the resulting
trajectories revealed that the most significant variations in the
configurational geometry involved the H–C=N–H
dihedral angle, ϕ, and the C=N–H angle, θ.
Using these two internal degrees of freedom, the configurational space
sampling obtained from all five independent AIMD simulations in the
ground and excited state are depicted in green in Figure 2a and b, respectively. Notably, in both electronic states,
the configurational space sampling afforded by the standard AIMD simulations
is rather limited: In the ground state, the H–C=N–H
dihedral angle varies between −25 and +25° and the C=N–H
angle varies between 100 and 125°. These variations are the product
of local thermal fluctuations at 300 K about the geometry-optimized
structure with coordinates [ϕ,θ] = [0.0,111.36]. The observed
thermal fluctuations in the excited state are slightly more pronounced
with the ϕ angle varying by ±40° and the θ angle
varying by ±20° about the geometry-optimized structure located
at [ϕ,θ] = [124.69,101.71].
Figure 2
(a,b) Conformational
space sampled in formaldimine by standard
AIMD (green) and A-AIMD (red) simulations, on the ground (left) and
first singlet excited (right) electronic states. (c,d) Free energy
surfaces derived from the conformational space sampled by A-AIMD simulations
in a and b, respectively. The most energetically stable state has
been defined as the most sampled state. (e,f) Free energy surfaces
obtained from metadynamics simulations. The ϕ and θ coordinates
have been used as the two collective coordinates. Energies are expressed
in kcal/mol.
(a,b) Conformational
space sampled in formaldimine by standard
AIMD (green) and A-AIMD (red) simulations, on the ground (left) and
first singlet excited (right) electronic states. (c,d) Free energy
surfaces derived from the conformational space sampled by A-AIMD simulations
in a and b, respectively. The most energetically stable state has
been defined as the most sampled state. (e,f) Free energy surfaces
obtained from metadynamics simulations. The ϕ and θ coordinates
have been used as the two collective coordinates. Energies are expressed
in kcal/mol.The standard AIMD trajectories described above
served as the initiation
point for the accelerated ab initio MD simulations.
Using a fixed value for the acceleration parameter, α = 0.01
au, a series of short [100 000 MD step] A-AIMD simulations
were performed across a broad range of acceleration levels in both
the ground and excited state. The acceleration level was controlled
by varying the boost energy, [Eb – V0], where V0 is
the average density functional energy obtained from the standard AIMD
simulations. The choice of the acceleration level is exceedingly important:
If the acceleration level is too low, ostensibly no enhanced configurational
space sampling is observed. In contrast, applying too high an acceleration
level results in a molecular explosion or dissociation of the system.
In the present case of FD, [Eb – V0] was varied between 0.050 au and 0.100 au
in steps of 0.005 au. The optimal acceleration levels for enhanced
configurational space sampling were found to be [Eb – V0] = 0.085 au
and [Eb – V0] = 0.060 au for the ground and excited state, respectively.
These “optimal” acceleration levels afforded the most
efficient configurational space sampling, while not rendering dissociation
of the system. Once the optimal acceleration levels in the ground
and excited state had been determined, five independent A-AIMD simulations
were performed for 500 000 MD steps.The configurational
space sampling obtained from the five independent
A-AIMD simulations in the ground and excited state is depicted in
red in Figure 2a and b, respectively. Clearly,
the accelerated MD simulations provide a much more complete and robust
description of the conformational space sampling properties of FDcompared to the standard AIMD trajectories. Most importantly, in the
A-AIMD simulations, we observe multiple isomerization
events in both the ground and excited state. Interestingly, the A-AIMD
simulations reveal significant differences in the specific adiabatic
isomerization pathways in the two electronic states: In the ground
state, as the ϕ angle flips from 0° to ±180°,
the C=N–H angle, θ, is seen to significantly increase.
At the orthogonal twist geometry (ϕ = ±90°), the C=N–H
angle adopts values between +140° and +170°. By contrast,
in the excited state adiabatic isomerization process, the θ
angle adopts values between 90° and 140° at ϕ = 0.The associated free energy surfaces in the (ϕ,θ) configurational
subspace (see Theory and Computational Details) for the ground and excited state of FD are depicted in Figure 2c and d, respectively. The lowest free energy barrier
for adiabatic isomerization on the ground state surface was found
to be 0.052 au, and the associated transition state is located at
[ϕ,θ] = [±100,150]. Similarly, in the S1 excited state, the lowest free energy barrier for isomerization
is 0.037 au, and the associated transition state is located at [ϕ,θ]
= [0,120]. The free energy barriers obtained from the A-AIMD simulations
presented here are in excellent agreement with previous theoretical
and experimental studies, where the free energy of isomerization in
the S0 and S1 states was found to be 0.048 au
and 0.040 au, respectively.[10,42]In order to provide
a reference to validate the A-AIMD free energy
surfaces shown in Figures 2c and d, we performed
two metadynamics[37] simulations using the
ϕ and θ internal degrees of freedom as the collective
variables (see Theory and Computational Details). The free energy surfaces for the ground and excited state obtained
from the metadynamics simulations are depicted in Figure 2e and f, respectively. Clearly, the adiabatic free energy
surfaces provided by both methods are very similar, and the extent
of configurational space sampling obtained from the A-AIMD and metadynamics
simulations is also similar. This is an encouraging result when one
considers that in the accelerated molecular dynamics approach there
is no a priori definition of a reaction coordinate
or a set of collective variables.The comparative analysis of
the present A-AMD approach and the
more well-known metadynamics method clearly demonstrates that one
can obtain an accurate energetic description of the excited state
energy surface, which is both an important and necessary prerequisite
to acquiring a detailed picture of the photophysical topology of the
system. The excited state free energy surface and associated population
statistics acquire much more significance when studying a system with
considerably longer excited state lifetimes, such as in the case of
the acetone-in-water system presented later in this paper.The
efficiency of the configurational space sampling obtained from
the A-AIMD simulations can be readily inferred from the magnitude
of the free energy barriers that are traversed during the simulations
of FD in the ground and excited state. According to transition state
theory (TST), the predicted rate constant, k, for
a transition between two states separated by a free energy barrier,
ΔG, is given bywhere κ is the transmission coefficient
and kB is the Boltzmannconstant. As discussed
above, the free energy barrier for adiabatic isomerization of FD in
the ground state is 0.052 au. In the fast limit (κ = 1), the
TST predicted rate constant for this process is therefore 1.62 ×
10–11 s–1. Given that a 50-ps
ground state A-AIMD trajectory produces ∼4–5 isomerization
events, on average, in the A-AIMD simulations, an isomerization event
is observed every 100 000 MD steps (∼10 ps). In light
of this observation, the application of the bias potential enhances
the configurational space sampling rate by a factor of 1021.In order to map out the photophysical topology of FD, the
configurational
subspace (ϕ,θ) shown in Figure 1b was divided into bins; the vertical de-excitation energy gap across
the entire excited state configurational space was calculated (see Theory and Computational Details). Two large crossing
seam regions are clearly visible, located at [±50 < ϕ
< ±150, 70 < θ < 120]. Notably, outside of these
two regions, the vertical de-excitation energy gap significantly increases
to values on the order of 20–30 kcal/mol. Closer inspection
of Figure 3a reveals that there exists a considerable
amount of fine-structure on the vertical deactivation energy surface.
This observation raises the important question as to whether this
fine structure is really a physical phenomenon of the system or whether
it is merely statistical noise invoked by the application of the bias
potential in the A-AIMD simulations. In order to address this issue,
200 excited state structures along the ϕ coordinate were selected
from the A-AIMD simulations with a fixed C=N–H angle, θ
= 90. A partial geometry optimization procedure was performed for
each structure, in which the internal (ϕ,θ) coordinates
were constrained and the vertical de-excitation gap was then recalculated.
Figure 3b depicts the S1–S0 energy profile along the ϕ coordinate obtained from
the A-AIMD structures collected “on-the-fly” and their
geometry-optimized counterparts. The two resulting energy profiles
are remarkably similar, confirming the fact that small local molecular
distortions arising from the application of the bias potential in
the A-AIMD simulations do not compromise the accuracy of the vertical
deactivation energy statistics. A very interesting feature in the
energy–gap profile depicted in Figure 3b is observed deep in the crossing seam region: Between coordinates
[−110 < ϕ < −75] and again at [75 < θ
< 110], the vertical deactivation energy gap is seen to increase
by ∼2 kcal/mol. This small variation in the energy gap is due
to a change in the pyramidalization angle about the C atom, which
reaches its maximum at a pyramidalization angle of ∼27°.
This result is in agreement with a previous study by Doltsinis et
al., who observed a loss of degeneracy of the crossing seam at a pyramidalization
angle of ∼30°.[35] This result
provides additional validation to the degree of detail that can be
achieved in both the conformational space and free energy sampling,
otherwise not possible using standard MD or single point electroniccalculations. A second interesting feature shown in Figure 3a and b is the observation of negative [S1–S0] energy gaps for a limited region of the A-AMD-sampled
configurational space for FD. Such small negative energy gaps have
been observed previously[35] and are invariably
the result of an error arising from the fact that the ground and excited
electronic state calculations are performed independently. As such,
we would like to point out that these small artifacts are not a result
of the application of the A-AMD biasing potential but rather a product
of the polyelectronic wave function representation employed in this
work.
Figure 3
(a) Variation in the energy gap [S1–S0] for formaldimine as a function of the internal coordinates ϕ
and θ, obtained from single point calculations in randomly chosen
structures sampled across the A-AIMD trajectory (see Theory and Computational Details). The solid line indicates
the cut of the surface for which the direct relaxed difference has
been computed. Dark blue indicates regions of energetic degeneracy
between S0 and S1. Evolution toward red indicates
a loss of energetic degeneracy. (b) Direct (dashed line) and relaxed
(solid line) S1–S0 energy gap profiles
along the surface cut at ϕ = 90°. Energies are expressed
in kcal/mol.
(a) Variation in the energy gap [S1–S0] for formaldimine as a function of the internal coordinates ϕ
and θ, obtained from single point calculations in randomly chosen
structures sampled across the A-AIMD trajectory (see Theory and Computational Details). The solid line indicates
the cut of the surface for which the direct relaxed difference has
been computed. Dark blue indicates regions of energetic degeneracy
between S0 and S1. Evolution toward red indicates
a loss of energetic degeneracy. (b) Direct (dashed line) and relaxed
(solid line) S1–S0 energy gap profiles
along the surface cut at ϕ = 90°. Energies are expressed
in kcal/mol.
Conical Intersections and Proton Transfer in
Salicylideneaniline
Using our A-AIMD approach on the FD system,
we were able to exhaustively investigate the photophysical properties
of the system and identify crossing seams from the data collected
in S1 at a higher sampling rate compared to standard AIMD
approaches. In light of this successful initial study, we moved on
to a more complex system. The aromatic Schiff basesalicylideneaniline
(SA) represents a classic example of an excited state intramolecular
proton transfer (ESIPT) reaction. The reactant and product forms of
SA, corresponding to the enol and cis-keto isomeric
forms, respectively, are connected by an ESIPT event after photoexcitation
to S1, as shown in Figure 1c. At
this point, the electronically excited cis-keto tautomer
can either undergo a cis–trans isomerization to form a trans-keto tautomer or
directly deactivate to S0. Despite this simple chemical
scheme, much controversy has arisen in the past 40 years concerning
the experimental determination of the time scale for the ESIPT process
in SA, with measurements ranging from 750 fs to less than 50 fs. The
reader is referred to ref (36) for an updated list of references on the SA studies. Sekiya
and collaborators proposed the presence of two nonadiabatic processes
competing with the proton transfer event:[47] The first process involves a highly deformed enolconformation,
while the second relaxation mechanism is associated with the cis–trans isomerization path of
the cis-keto tautomer, as depicted in Figure 1d. Such competing processes explained the discrepancy
in the experimental observations. Very recently, “static”
TDDFT calculations (validated with high-level multiconfigurational ab initio calculations) and quantum dynamical simulations
confirmed the presence of two CI regions associated with both the
enol and cis-keto states.[36]In order to study the competition between the two relaxation
pathways on the excited state surface, we performed a series of AIMD
and A-AIMD simulations similar to those described previously for FD.
A standard geometry optimization and equilibration procedure was performed
on the enol tautomer in the excited state. The geometry optimization
led directly to the cis-keto tautomer of SA, indicating
that the enol state is not a stable species in S1. Five
independent AIMD simulations were performed for a total of 1 500 000
MD steps (∼150 ps) at 300 K on the cis-keto
tautomer in S1. The system remained in the cis-keto state during the simulations, and we were not able to observe
a reverse ESIPT event. The O–H atomic distance was seen to
fluctuate around the cis-keto geometry-optimized
value (∼2 Å) in all the ∼150 ps trajectories, as
depicted in green in Figure 4a. The principal
geometrical fluctuations observed in the simulations can be described
by two independent variables: the C–C=C–N dihedral
angle (highlighted in red in Figure 1c), ω2, which varies between −50 and +50 degrees, and the
C=C bond distance, r2, which varies
between 1.32 and 1.53 Å. Notably, although large amplitude vibrations
were seen along the ω2 coordinate (Figure 4c), cis–trans isomerization was not observed in the standard AIMD simulations.
Figure 4
(a) Evolution
of the O–H distance of salicylideneaniline
during ∼150 ps of standard AIMD (green) and A-AIMD (red) simulations
in the S1 state. The initial structure of the simulations
corresponds to a cis-keto tautomer. (b,c) Conformational
space sampled in salicylideneaniline using standard AIMD (green) and
A-AIMD (red) simulations in the S1 state in the enol and cis-keto regions, respectively. The intersection of the
solid lines indicates the location of the two MECPs described in ref (36).
(a) Evolution
of the O–H distance of salicylideneaniline
during ∼150 ps of standard AIMD (green) and A-AIMD (red) simulations
in the S1 state. The initial structure of the simulations
corresponds to a cis-keto tautomer. (b,c) Conformational
space sampled in salicylideneaniline using standard AIMD (green) and
A-AIMD (red) simulations in the S1 state in the enol and cis-keto regions, respectively. The intersection of the
solid lines indicates the location of the two MECPs described in ref (36).In order to improve the conformational space sampling,
a set of
short A-AIMD simulations were initiated. Using a fixed value of α
= 0.01 au for the acceleration parameter, a series of 500 000
MD-step A-AIMD simulations were performed across a broad range of
acceleration levels for the cis-keto state in S1, whereby [Eb – V0] was varied between 0.050 au and 0.200 au
in steps of 0.05 au. The optimal acceleration level for enhanced configurational
space sampling was found to be [Eb – V0] = 0.150 au for the excited state. This optimal
acceleration level was employed for five independent accelerated ab initio MD simulations, each performed for a total of
1 500 000 MD steps (∼150 ps).The analysis
of our A-AIMD simulations indicated that the configurational
space sampled within ∼150 ps covered both the cis-keto and the enol states. The O–H bond distance presented
large fluctuations during the first 100 ps, ranging between 1.2 and
5.5 Å. After ∼110 ps, a reverse ESIPT event was observed,
which led to a decrease of the O–H distance to ∼1.0
Å, as depicted in red in Figure 4a. A
difference of ∼10 kcal/mol between the enol and cis-keto regions in the excited state was estimated, which explains
why we did not observe a reverse ESIPT event during the standard AIMD
simulations. By contrast, however, the application of the bias potential
in the A-AIMD simulations facilitated the observation of a reverse
ESIPT event after only 110 ps (see Figure 4a). The newly formed enol tautomer remained stable for the last ∼40
ps of the simulation, affording both ample conformational and energy
statistics for the enol state. As such, two chemically different but
relevant sections of the PES were successfully sampled from a single
molecular geometry.The configurational space sampled in the
enol region revealed significant
variations in both the C–C=N–C dihedral angle
(highlighted in red in Figure 1c), ω1, and the C=N bond distance, r1, which may be compared directly to the prominent
internal degrees of freedom identified for the cis-keto state [ω2, r2].
Interestingly, the rotation and stretching along double bonds in excited
electronic states has been previously proposed as a common feature
in nonadiabatic deactivation pathways for complex organiccompounds.[48] The variation of these degrees of freedom sampled
in the five independent A-AIMD simulations in the excited state are
depicted in red in Figure 4b and c. As expected,
the accelerated MD simulations provide considerably more exhaustive
configurational space sampling compared to their AIMD counterparts.
In the A-AIMD simulations, we observed multiple rotation events around
the dihedral angles ω1 and ω2 in
the enol and cis-keto regions, respectively, and
complete rotation events through 360° were observed in both cases.
Simultaneously, rather large fluctuations in the bond distances (1.22–1.67
Å for r1 and 1.23–1.75 Å
for r2) were also observed. The intersection
of the two straight lines depicted in Figure 4b and c defines the coordinates for the two MECPs described in a
previous study of SA.[36] These two MECPs
are located at the coordinates (92, 1.37) and (89, 1.47) for the enol
and cis-keto regions, respectively. Notably, the
conformational space sampled in the standard AIMD simulations for
the cis-keto state (Figure 4c) does not include these coordinates, while the A-AIMD simulations
readily encompass a considerably larger region of the configurational
subspace including the associated MECP coordinates. The variation
in the underlying PES explored in our A-AIMD simulations indicates
that the rotational barriers associated with the dihedral angles ω1 and ω2 are 16.75 and 18.03 kcal/mol, respectively.
As such, the twisted conformations for both the enol and cis-keto tautomers are clearly inaccessible in the standard AIMD simulations
but can be readily observed in the A-AIMD trajectories.The
vertical de-excitation energy gaps mapped across the entire
excited state configurational subspaces (ω1, r1) and (ω2, r2) for the enol and cis-keto tautomeric
states are depicted in Figures 5a and b. Two
large conical intersection regions are clearly visible on each plot,
located at [±75 < ω1 < ±110, 1.40
< r1 < 1.55] and [±60 <
ω2 < ±120, 1.40 < r2 < 1.65] for the enol and cis-keto states,
respectively. These results show that a complete characterization
of both crossing seams can be obtained from the A-AIMD simulations,
even though they belong to very different regions of the PES.
Figure 5
(a,b) Variation
in the energy gap [S1 – S0] of salicylideneaniline,
in the enol and cis-keto regions, respectively. The
surfaces are projected on the (ω1,r1) and (ω2,r2) subspaces and have been obtained from single
point calculations in randomly chosen structures sampled in the A-AIMD
trajectories (see Theory and Computational Details). Energies are expressed in kcal/mol. Dark blue indicates regions
of energetic degeneracy between S0 and S1. Evolution
toward red indicates a loss of energetic degeneracy.
(a,b) Variation
in the energy gap [S1 – S0] of salicylideneaniline,
in the enol and cis-keto regions, respectively. The
surfaces are projected on the (ω1,r1) and (ω2,r2) subspaces and have been obtained from single
point calculations in randomly chosen structures sampled in the A-AIMD
trajectories (see Theory and Computational Details). Energies are expressed in kcal/mol. Dark blue indicates regions
of energetic degeneracy between S0 and S1. Evolution
toward red indicates a loss of energetic degeneracy.The extended crossing seams present in the de-excitation
energy
maps (Figures 4 and 5) obtained from the A-AIMD simulations clearly suggest that there
exist two competing radiationless relaxation decay processes which
completely describe the photophysical properties of SA after vertical
excitation: In the first of these relaxation decay mechanisms, the
vertical excitation energy initiates a spontaneous proton transfer
event which leads directly to the formation of the (excited) cis-keto state (Figure 1d), and a
subsequent rotation in ω2 brings the system to the
extended conical intersection seam (CI2) depicted in Figure 5b, resulting in either a cis-keto
or trans-keto ground state photoisomerized product.
In a second competing relaxation mechanism, the vertical excitation
energy induces a rotation about the ω1 dihedral angle
which breaks the hydrogen bond and results in the formation of a highly
twisted enolconformation. In the twisted enol state, the C=N
bond is weakened, and the r1 bond length
increases up to 1.67 (see Figure 4b), bringing
the system into the conical intersection region (CI1). Notably, the
correlation between the ω1 and r1 coordinates assists the evolution of the enol tautomer
toward the extended CI seam, an observation that cannot be ascertained
from the MECP result but is readily confirmed by the exhaustive configurational
space sampling provided by the A-AIMD simulations. The existence of
two competing radiationaless relaxation decay processes predicted
from this study readily explains the experimental observation that
the quantum yield of the cis/trans-keto products is lower than one would expect when only considering
a single nonadiabatic relaxation mechanism associated with the enol-to-cis-keto proton transfer event.
Using A-AIMD Simulations to Recapitulate and
Interpret Absorption and Emission Spectra
In section I, we focused on the use of
excited state A-AIMD to efficiently identify and explore CIs and conical
intersection seams allowing for the prediction of diverse and often
competing radiationless decay mechanisms in systems exhibiting extremely
short excited state lifetimes. We now extend our study to the direct
recapitulation and interpretation of absorption and emission spectra,
whereby we make use of both the enhanced configurational space sampling
properties and the approximate free energy statistics afforded by
the accelerated molecular dynamics method. The ab initio prediction
of absorption and emission spectra in the condensed phase represents
a considerable challenge, since it requires both the use of an accurate
quantum mechanical method and a correct description of the solvent
effect and temperature. At room temperature, our ability to simulate
all the relevant conformational states of a molecule and the phase
space statistics of the solvent is often limited. Using a proto-typical
system, acetone in bulk water, we now demonstrate how the application
of A-AIMD leads to an improved description of both absorption and
emission spectra, when compared to conventional AIMD simulations.
Acetone in water was chosen for this test as it has been studied extensively
both theoretically and experimentally.AIMD and A-AIMD simulations
were performed on a periodically repeating
cubic unit cell of edge length 22.7 au containing a single acetone
molecule and 34 H2O molecules, which had already been brought
to equilibrium under the correct density conditions using classical
molecular dynamics. Initially, the simulation system was further equilibrated
with AIMD at 300 K for 15 ps. Production run AIMD and A-AIMD trajectories
were carried out for 10 ps in both the ground and first-excited state.
All simulation details including the choice of density functional
(BLYP) and employed pseudopotentials, the fictitious electron mass
(400 au), and the time step (4 au) were identical to those described
previously for the FD and SA systems. For the A-AIMD simulations,
the acceleration parameters were set to α = 0.1 au, and [Eb – V0] =
0.15 au, based on a previous A-AIMD study of bulk water.[15] It should be noted that, while the application
of a larger bias potential is possible, using lower acceleration levels
guarantees that the numerical error remains minimal during the free
energy reweighting process. For both ground and excited state trajectories,
the atomiccoordinates were saved each 10 MD steps, and the respective
vertical excitation and vertical de-excitation energy gap for each
simulation frame was calculated in order to recapitulate the absorption
and emission spectra. In the case of the accelerated MD simulations,
the relative intensity of the absorption/emission spectra was obtained
to a first approximation using the population statistics obtained
from the canonical Boltzmann reweighting procedure described previously.In Figure 6b, the absorption and emission
spectra calculated from the A-AIMD trajectories are shown. A modest,
but nevertheless not insignificant, improvement in both the theoretical
recapitulation of both these spectra was obtained from the A-AIMD
simulations: Average values for the emission spectrum [2.58(0.26)
and 2.50(0.25) eV for A-AIMD and AIMD, respectively] should be compared
to a range of values, between 2.99[49] and
3.06 eV,[50,51] measured experimentally The deviation between
ROKS and experiments has been explained in a previous QM/MM study[52] where ROKS results for acetone in water were
found to be systematically red-shifted with respect to TDDFT calculations
by a constant value, estimated around −0.28 eV.[52] Average values for the absorption spectrum [4.11(0.12)
and 3.95(0.11) eV for A-AIMD and AIMD, respectively] are also in reasonable
agreement with the experimental observation, 4.69 eV.[53] In addition to improving the average values of the absorption
and emission distributions, A-AIMD also improves the quality of the
population statistics and hence calculated spectral lineshapes. In
particular, irregularity in the spectral histograms suggests that
10 ps of AIMD are too short to obtain converged sampling, whereas
clear improvement can be seen with A-AIMD simulations. As an example
of the enhanced configurational space sampling observed in the A-AIMD
simulations, Figure 6a shows a comparison for
the methyl group rotation observed in both the standard AIMD and A-AIMD
simulations in the excited state. Notably enhanced phase space sampling
for the solvent water molecules around the acetone system was also
observed in the A-AIMD simulations.
Figure 6
(a) The rotation of the methyl group (shown
here for a representative
excited state simulation on S1), one of the motions that
occurs more rapidly in A-AIMD (blue) when compared to AIMD simulations
(black). (b) Absorption (full lines) and fluorescence (broken lines)
spectra of acetone, as calculated with A-AIMD (blue) and a conventional
AIMD (black) using the same number of MD steps.
(a) The rotation of the methyl group (shown
here for a representative
excited state simulation on S1), one of the motions that
occurs more rapidly in A-AIMD (blue) when compared to AIMD simulations
(black). (b) Absorption (full lines) and fluorescence (broken lines)
spectra of acetone, as calculated with A-AIMD (blue) and a conventional
AIMD (black) using the same number of MD steps.
Conclusions
In this paper, we have performed excited
state accelerated ab initio molecular dynamics (A-AIMD)
to explore the excited
state energy landscape and photophysical properties of a variety of
systems. In an initial case study on formaldamine, we have found that
A-AIMD can be readily employed to enhance configurational space sampling
for the study of molecular systems in the excited state, crossing
energy barriers on the excited state energy landscape of up to 30
kcal/mol and affording a quantitative description of the excited state
free energy surface. Notably, in comparison to other popular enhanced
sampling methods that involve the specific definition of a reaction
coordinate, A-AIMD does not require any a priori understanding
of the underlying free energy surface. The method was subsequently
used to study the photophysical topologies of salicylideneaniline
(SA). It allowed the identification and characterization of conical
intersections (CIs) and extended conical intersection seams and the
prediction of two different, competing radiationless decay processes.
For acetone in water, we demonstrated that the enhanced configurational
space sampling obtained by A-AIMD may be used to compute converged
absorption and emission spectra. The A-AIMD method is general and
may be implemented in combination with any methodological representation
of the polyelectronic wave function. Given the rapid and sustained
increase in available computational resources, it may soon be possible
to combine A-AIMD with more sophisticated post-Hartree–Fock
representations of the polyelectronic wave function in order to efficiently
obtain an accurate and complete description of both ground and excited
state energy surfaces.
Authors: George T Hanson; Robert Aggeler; Devin Oglesbee; Mark Cannon; Roderick A Capaldi; Roger Y Tsien; S James Remington Journal: J Biol Chem Date: 2004-01-13 Impact factor: 5.157
Authors: Colette T Dooley; Timothy M Dore; George T Hanson; W Coyt Jackson; S James Remington; Roger Y Tsien Journal: J Biol Chem Date: 2004-02-25 Impact factor: 5.157
Authors: Gerrit Groenhof; Lars V Schäfer; Martial Boggio-Pasqua; Maik Goette; Helmut Grubmüller; Michael A Robb Journal: J Am Chem Soc Date: 2007-05-08 Impact factor: 15.419