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Literature DB >> 21079590

Grand challenge commentary: RNA epigenetics?

Abstract

Post-transcriptional RNA modifications can be dynamic and might have functions beyond fine-tuning the structure and function of RNA. Understanding these RNA modification pathways and their functions may allow researchers to identify new layers of gene regulation at the RNA level.

Mesh：

Substances：
Histones
RNA
DNA

Year: 2010 PMID： 21079590 DOI： 10.1038/nchembio.482

Source DB: PubMed Journal: Nat Chem Biol ISSN： 1552-4450 Impact factor: 15.040

19 in total

1. AlkB-mediated oxidative demethylation reverses DNA damage in Escherichia coli.

Authors: Pål Ø Falnes; Rune F Johansen; Erling Seeberg
Journal: Nature Date: 2002-09-12 Impact factor: 49.962

2. Interaction of JMJD6 with single-stranded RNA.

Authors: Xia Hong; Jianye Zang; Janice White; Chao Wang; Cheol-Ho Pan; Rui Zhao; Robert C Murphy; Shaodong Dai; Peter Henson; John W Kappler; James Hagman; Gongyi Zhang
Journal: Proc Natl Acad Sci U S A Date: 2010-08-02 Impact factor: 11.205

3. RlmN and Cfr are radical SAM enzymes involved in methylation of ribosomal RNA.

Authors: Feng Yan; Jacqueline M LaMarre; Rene Röhrich; Jochen Wiesner; Hassan Jomaa; Alexander S Mankin; Danica Galonić Fujimori
Journal: J Am Chem Soc Date: 2010-03-24 Impact factor: 15.419

4. Methylation of tRNAAsp by the DNA methyltransferase homolog Dnmt2.

Authors: Mary Grace Goll; Finn Kirpekar; Keith A Maggert; Jeffrey A Yoder; Chih-Lin Hsieh; Xiaoyu Zhang; Kent G Golic; Steven E Jacobsen; Timothy H Bestor
Journal: Science Date: 2006-01-20 Impact factor: 47.728

5. Oxidative demethylation by Escherichia coli AlkB directly reverts DNA base damage.

Authors: Sarah C Trewick; Timothy F Henshaw; Robert P Hausinger; Tomas Lindahl; Barbara Sedgwick
Journal: Nature Date: 2002-09-12 Impact factor: 49.962

6. Prostate cancer antigen-1 contributes to cell survival and invasion though discoidin receptor 1 in human prostate cancer.

Authors: Keiji Shimada; Mitsutoshi Nakamura; Eiwa Ishida; Tomonori Higuchi; Hiroshi Yamamoto; Kazutake Tsujikawa; Noboru Konishi
Journal: Cancer Sci Date: 2007-10-29 Impact factor: 6.716

7. The essential Gcd10p-Gcd14p nuclear complex is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA.

Authors: J Anderson; L Phan; R Cuesta; B A Carlson; M Pak; K Asano; G R Björk; M Tamame; A G Hinnebusch
Journal: Genes Dev Date: 1998-12-01 Impact factor: 11.361

8. A non-heme iron-mediated chemical demethylation in DNA and RNA.

Authors: Chengqi Yi; Cai-Guang Yang; Chuan He
Journal: Acc Chem Res Date: 2009-04-21 Impact factor: 22.384

9. A common variant in the FTO gene is associated with body mass index and predisposes to childhood and adult obesity.

Authors: Timothy M Frayling; Nicholas J Timpson; Michael N Weedon; Eleftheria Zeggini; Rachel M Freathy; Cecilia M Lindgren; John R B Perry; Katherine S Elliott; Hana Lango; Nigel W Rayner; Beverley Shields; Lorna W Harries; Jeffrey C Barrett; Sian Ellard; Christopher J Groves; Bridget Knight; Ann-Marie Patch; Andrew R Ness; Shah Ebrahim; Debbie A Lawlor; Susan M Ring; Yoav Ben-Shlomo; Marjo-Riitta Jarvelin; Ulla Sovio; Amanda J Bennett; David Melzer; Luigi Ferrucci; Ruth J F Loos; Inês Barroso; Nicholas J Wareham; Fredrik Karpe; Katharine R Owen; Lon R Cardon; Mark Walker; Graham A Hitman; Colin N A Palmer; Alex S F Doney; Andrew D Morris; George Davey Smith; Andrew T Hattersley; Mark I McCarthy
Journal: Science Date: 2007-04-12 Impact factor: 47.728

10. Variation in FTO contributes to childhood obesity and severe adult obesity.

Authors: Christian Dina; David Meyre; Sophie Gallina; Emmanuelle Durand; Antje Körner; Peter Jacobson; Lena M S Carlsson; Wieland Kiess; Vincent Vatin; Cecile Lecoeur; Jérome Delplanque; Emmanuel Vaillant; François Pattou; Juan Ruiz; Jacques Weill; Claire Levy-Marchal; Fritz Horber; Natascha Potoczna; Serge Hercberg; Catherine Le Stunff; Pierre Bougnères; Peter Kovacs; Michel Marre; Beverley Balkau; Stéphane Cauchi; Jean-Claude Chèvre; Philippe Froguel
Journal: Nat Genet Date: 2007-05-13 Impact factor: 38.330

180 in total

1. Transcriptional priming of cytoplasmic post-transcriptional regulation.

Authors: Itay Tirosh
Journal: Transcription Date: 2011-11-01

Review 2. RNA epigenetics--chemical messages for posttranscriptional gene regulation.

Authors: Ian A Roundtree; Chuan He
Journal: Curr Opin Chem Biol Date: 2015-11-26 Impact factor: 8.822

Review 3. The curious chemical biology of cytosine: deamination, methylation, and oxidation as modulators of genomic potential.

Authors: Christopher S Nabel; Sara A Manning; Rahul M Kohli
Journal: ACS Chem Biol Date: 2011-10-31 Impact factor: 5.100

4. Simultaneous Quantification of Methylated Cytidine and Adenosine in Cellular and Tissue RNA by Nano-Flow Liquid Chromatography-Tandem Mass Spectrometry Coupled with the Stable Isotope-Dilution Method.

Authors: Lijuan Fu; Nicholas J Amato; Pengcheng Wang; Sara J McGowan; Laura J Niedernhofer; Yinsheng Wang
Journal: Anal Chem Date: 2015-07-21 Impact factor: 6.986

5. Crystal structure of the RNA demethylase ALKBH5 from zebrafish.

Authors: Weizhong Chen; Liang Zhang; Guanqun Zheng; Ye Fu; Quanjiang Ji; Fange Liu; Hao Chen; Chuan He
Journal: FEBS Lett Date: 2014-02-20 Impact factor: 4.124

Review 6. RNA epigenetics.

Authors: Nian Liu; Tao Pan
Journal: Transl Res Date: 2014-04-08 Impact factor: 7.012