Literature DB >> 21063542

A comparison of two approaches to text processing: facilitating chart reviews of radiology reports in electronic medical records.

Julie A Womack1, Matthew Scotch, Cynthia Gibert, Wendy Chapman, Michael Yin, Amy C Justice, Cynthia Brandt.   

Abstract

Chart review is central to health services research. Text processing, which analyzes free-text fields through automated methods, can facilitate this process. We compared precision and accuracy of NegEx and SQLServer 2008 Free-Text Search in identifying acute fractures in radiology reports.The term "fracture" was included in 23,595 radiology reports from the Veterans Aging Cohort Study. Four hundred reports were randomly selected and manually reviewed for acute fractures to establish a gold standard. Reports were then processed by SQLServer and NegEx. Results were compared to the gold standard to determine accuracy, precision, recall, and F-statistic.NegEx and the gold standard identified acute fractures in 13 reports. SQLServer identified 2 in a report-based analysis (precision: 1.00; accuracy: 0.97; recall: 0.15; F-statistic: 0.26), and 12 in a sentence-by-sentence analysis (precision: 1.00; recall: 0.92; accuracy: 0.92; F-statistic: 0.96).Text-processing tools utilizing basic database or programming skills are comparable, precise, and accurate in identifying reports for review.

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Year:  2010        PMID: 21063542      PMCID: PMC2966352     

Source DB:  PubMed          Journal:  Perspect Health Inf Manag        ISSN: 1559-4122


  10 in total

1.  Factors associated with successful answering of clinical questions using an information retrieval system.

Authors:  W R Hersh; M K Crabtree; D H Hickam; L Sacherek; L Rose; C P Friedman
Journal:  Bull Med Libr Assoc       Date:  2000-10

2.  Use of general-purpose negation detection to augment concept indexing of medical documents: a quantitative study using the UMLS.

Authors:  P G Mutalik; A Deshpande; P M Nadkarni
Journal:  J Am Med Inform Assoc       Date:  2001 Nov-Dec       Impact factor: 4.497

3.  Evaluation of negation phrases in narrative clinical reports.

Authors:  W W Chapman; W Bridewell; P Hanbury; G F Cooper; B G Buchanan
Journal:  Proc AMIA Symp       Date:  2001

4.  A simple algorithm for identifying negated findings and diseases in discharge summaries.

Authors:  W W Chapman; W Bridewell; P Hanbury; G F Cooper; B G Buchanan
Journal:  J Biomed Inform       Date:  2001-10       Impact factor: 6.317

Review 5.  The kappa statistic in reliability studies: use, interpretation, and sample size requirements.

Authors:  Julius Sim; Chris C Wright
Journal:  Phys Ther       Date:  2005-03

6.  Evaluating the effectiveness of four contextual features in classifying annotated clinical conditions in emergency department reports.

Authors:  David Chu; John N Dowling; Wendy W Chapman
Journal:  AMIA Annu Symp Proc       Date:  2006

Review 7.  How well do physicians use electronic information retrieval systems? A framework for investigation and systematic review.

Authors:  W R Hersh; D H Hickam
Journal:  JAMA       Date:  1998-10-21       Impact factor: 56.272

8.  A general natural-language text processor for clinical radiology.

Authors:  C Friedman; P O Alderson; J H Austin; J J Cimino; S B Johnson
Journal:  J Am Med Inform Assoc       Date:  1994 Mar-Apr       Impact factor: 4.497

9.  Veterans Aging Cohort Study (VACS): Overview and description.

Authors:  Amy C Justice; Elizabeth Dombrowski; Joseph Conigliaro; Shawn L Fultz; Deborah Gibson; Tamra Madenwald; Joseph Goulet; Michael Simberkoff; Adeel A Butt; David Rimland; Maria C Rodriguez-Barradas; Cynthia L Gibert; Kris Ann K Oursler; Sheldon Brown; David A Leaf; Matthew B Goetz; Kendall Bryant
Journal:  Med Care       Date:  2006-08       Impact factor: 2.983

10.  ConText: an algorithm for determining negation, experiencer, and temporal status from clinical reports.

Authors:  Henk Harkema; John N Dowling; Tyler Thornblade; Wendy W Chapman
Journal:  J Biomed Inform       Date:  2009-05-10       Impact factor: 6.317

  10 in total
  7 in total

1.  Automated identification of patients with pulmonary nodules in an integrated health system using administrative health plan data, radiology reports, and natural language processing.

Authors:  Kim N Danforth; Megan I Early; Sharon Ngan; Anne E Kosco; Chengyi Zheng; Michael K Gould
Journal:  J Thorac Oncol       Date:  2012-08       Impact factor: 15.609

2.  Identification of Long Bone Fractures in Radiology Reports Using Natural Language Processing to support Healthcare Quality Improvement.

Authors:  Robert W Grundmeier; Aaron J Masino; T Charles Casper; Jonathan M Dean; Jamie Bell; Rene Enriquez; Sara Deakyne; James M Chamberlain; Elizabeth R Alpern
Journal:  Appl Clin Inform       Date:  2016-11-09       Impact factor: 2.342

3.  Using electronically available inpatient hospital data for research.

Authors:  Mandar Apte; Matthew Neidell; E Yoko Furuya; David Caplan; Sherry Glied; Elaine Larson
Journal:  Clin Transl Sci       Date:  2011-10       Impact factor: 4.689

4.  Electronic search programs are effective in identifying patients with minimal trauma fractures.

Authors:  K Blaker; A Wijewardene; E White; G Stokes; S Chong; K Ganda; L Ridley; S Brown; C White; R Clifton-Bligh; M J Seibel
Journal:  Osteoporos Int       Date:  2021-09-12       Impact factor: 4.507

5.  Exploring the frontier of electronic health record surveillance: the case of postoperative complications.

Authors:  Fern FitzHenry; Harvey J Murff; Michael E Matheny; Nancy Gentry; Elliot M Fielstein; Steven H Brown; Ruth M Reeves; Dominik Aronsky; Peter L Elkin; Vincent P Messina; Theodore Speroff
Journal:  Med Care       Date:  2013-06       Impact factor: 2.983

6.  Use of structured and unstructured data to identify contraceptive use in women veterans.

Authors:  Julie A Womack; Matthew Scotch; Sylvia N Leung; Melissa Skanderson; Harini Bathulapalli; Sally G Haskell; Cynthia A Brandt
Journal:  Perspect Health Inf Manag       Date:  2013-07-01

7.  Automated outcome classification of emergency department computed tomography imaging reports.

Authors:  Kabir Yadav; Efsun Sarioglu; Meaghan Smith; Hyeong-Ah Choi
Journal:  Acad Emerg Med       Date:  2013-08       Impact factor: 3.451

  7 in total

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