Literature DB >> 21052524

Using conformationally locked nucleosides to calibrate the anomeric effect: Implications for glycosyl bond stability.

Hyung Ryong Moon1, Maqbool A Siddiqui, Guangyu Sun, Igor V Filippov, Nicholas A Landsman, Yi-Chien Lee, Kristie M Adams, Joseph J Barchi, Jeffrey R Deschamps, Marc C Nicklaus, James A Kelley, Victor E Marquez.   

Abstract

Steric and electronic parameters such as the anomeric effect (AE) and gauche effect play significant roles in steering the North ⇆ South equilibrium of nucleosides in solution. Two isomeric oxa-bicyclo[3.1.0]hexane nucleosides that are conformationally locked in either the North or the South conformation of the pseudorotational cycle were designed to study the consequences of having the AE operational or not, independent of other parameters. The rigidity of the system allowed the orientation of the orbitals involved to be set in "fixed" relationships, either antiperiplanar where the AE is permanently "on", or gauche where the AE is impaired. The consequences of these two alternatives were subject to high-level calculations and measured experimentally by x-ray crystallography, hydrolytic stability of the glycosyl bond, and pKa values.

Entities:  

Year:  2010        PMID: 21052524      PMCID: PMC2967253          DOI: 10.1016/j.tet.2010.06.044

Source DB:  PubMed          Journal:  Tetrahedron        ISSN: 0040-4020            Impact factor:   2.457


  5 in total

1.  What are the consequences of freezing the anomeric effect in nucleosides?

Authors:  Victor E Marquez; Guangyu Sun; Maqbool A Siddiqui; Yi-Chien Lee; Joseph J Barchi; Igor V Filippov; Nicklaus A Landsman; James A Kelley
Journal:  Nucleic Acids Symp Ser (Oxf)       Date:  2008

2.  Structural analysis of 2',3'-dideoxyinosine, 2',3'-dideoxyadenosine, 2',3'-dideoxyguanosine and 2',3'-dideoxycytidine by 500-MHz 1H-NMR spectroscopy and ab-initio molecular orbital calculations.

Authors:  J Plavec; L H Koole; J Chattopadhyaya
Journal:  J Biochem Biophys Methods       Date:  1992-12

3.  1H NMR study of the sugar pucker of 2',3'-dideoxynucleosides with anti-human immunodeficiency virus (HIV) activity.

Authors:  B Jagannadh; D V Reddy; A C Kunwar
Journal:  Biochem Biophys Res Commun       Date:  1991-08-30       Impact factor: 3.575

4.  3'-C-branched 2'-deoxy-5-methyluridines: synthesis, enzyme inhibition, and antiviral properties.

Authors:  I I Fedorov; E M Kazmina; N A Novicov; G V Gurskaya; A V Bochkarev; M V Jasko; L S Victorova; M K Kukhanova; J Balzarini; E De Clercq
Journal:  J Med Chem       Date:  1992-11-27       Impact factor: 7.446

5.  Synthesis and antiviral activity of apio dideoxy nucleosides with azido or amino substituent.

Authors:  L K Jeong; Y A Lee; H R Moon; M W Chun
Journal:  Nucleosides Nucleotides       Date:  1998-08
  5 in total
  2 in total

1.  Synthesis and growth regulatory activity of a prototype member of a new family of aminothiol radioprotectors.

Authors:  Richard R Copp; Daniel D Peebles; William E Fahl
Journal:  Bioorg Med Chem Lett       Date:  2011-10-13       Impact factor: 2.823

2.  Synthesis of conformationally North-locked pyrimidine nucleosides built on an oxabicyclo[3.1.0]hexane scaffold.

Authors:  Olaf R Ludek; Victor E Marquez
Journal:  J Org Chem       Date:  2011-10-31       Impact factor: 4.354

  2 in total

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