Literature DB >> 21047261

Man's best friend becomes biology's best in show: genome analyses in the domestic dog.

Heidi G Parker1, Abigail L Shearin, Elaine A Ostrander.   

Abstract

In the last five years, canine genetics has gone from map construction to complex disease deconstruction. The availability of a draft canine genome sequence, dense marker chips, and an understanding of the genome architecture has changed the types of studies canine geneticists can undertake. There is now a clear recognition that the dog system offers the opportunity to understand the genetics of both simple and complex traits, including those associated with morphology, disease susceptibility, and behavior. In this review, we summarize recent findings regarding canine domestication and review new information on the organization of the canine genome. We discuss studies aimed at finding genes controlling morphological phenotypes and provide examples of the way such paradigms may be applied to studies of behavior. We also discuss the many ways in which the dog has illuminated our understanding of human disease and conclude with a discussion on where the field is likely headed in the next five years.

Entities:  

Mesh:

Year:  2010        PMID: 21047261      PMCID: PMC3322674          DOI: 10.1146/annurev-genet-102808-115200

Source DB:  PubMed          Journal:  Annu Rev Genet        ISSN: 0066-4197            Impact factor:   16.830


  158 in total

1.  Duplication of FGF3, FGF4, FGF19 and ORAOV1 causes hair ridge and predisposition to dermoid sinus in Ridgeback dogs.

Authors:  Nicolette H C Salmon Hillbertz; Magnus Isaksson; Elinor K Karlsson; Eva Hellmén; Gerli Rosengren Pielberg; Peter Savolainen; Claire M Wade; Henrik von Euler; Ulla Gustafson; Ake Hedhammar; Mats Nilsson; Kerstin Lindblad-Toh; Leif Andersson; Göran Andersson
Journal:  Nat Genet       Date:  2007-09-30       Impact factor: 38.330

2.  Elevated basal slippage mutation rates among the Canidae.

Authors:  Jeffrey Laidlaw; Yevgeniy Gelfand; Kar-Wai Ng; Harold R Garner; Rama Ranganathan; Gary Benson; John W Fondon
Journal:  J Hered       Date:  2007-04-16       Impact factor: 2.645

Review 3.  Comparative oncology today.

Authors:  Melissa C Paoloni; Chand Khanna
Journal:  Vet Clin North Am Small Anim Pract       Date:  2007-11       Impact factor: 2.093

4.  Linkage and segregation analysis of black and brindle coat color in domestic dogs.

Authors:  Julie A Kerns; Edward J Cargill; Leigh Anne Clark; Sophie I Candille; Tom G Berryere; Michael Olivier; George Lust; Rory J Todhunter; Sheila M Schmutz; Keith E Murphy; Gregory S Barsh
Journal:  Genetics       Date:  2007-05-04       Impact factor: 4.562

5.  Breed relationships facilitate fine-mapping studies: a 7.8-kb deletion cosegregates with Collie eye anomaly across multiple dog breeds.

Authors:  Heidi G Parker; Anna V Kukekova; Dayna T Akey; Orly Goldstein; Ewen F Kirkness; Kathleen C Baysac; Dana S Mosher; Gustavo D Aguirre; Gregory M Acland; Elaine A Ostrander
Journal:  Genome Res       Date:  2007-10-04       Impact factor: 9.043

6.  Mutation in HSF4 associated with early but not late-onset hereditary cataract in the Boston Terrier.

Authors:  Cathryn S Mellersh; Kathryn T Graves; Bryan McLaughlin; Rosalyn B Ennis; Louise Pettitt; Mark Vaudin; Keith C Barnett
Journal:  J Hered       Date:  2007-07-04       Impact factor: 2.645

7.  A noncoding melanophilin gene (MLPH) SNP at the splice donor of exon 1 represents a candidate causal mutation for coat color dilution in dogs.

Authors:  Cord Drögemüller; Ute Philipp; Bianca Haase; Anne-Rose Günzel-Apel; Tosso Leeb
Journal:  J Hered       Date:  2007-05-22       Impact factor: 2.645

8.  Efficient mapping of mendelian traits in dogs through genome-wide association.

Authors:  Elinor K Karlsson; Izabella Baranowska; Claire M Wade; Nicolette H C Salmon Hillbertz; Michael C Zody; Nathan Anderson; Tara M Biagi; Nick Patterson; Gerli Rosengren Pielberg; Edward J Kulbokas; Kenine E Comstock; Evan T Keller; Jill P Mesirov; Henrik von Euler; Olle Kämpe; Ake Hedhammar; Eric S Lander; Göran Andersson; Leif Andersson; Kerstin Lindblad-Toh
Journal:  Nat Genet       Date:  2007-09-30       Impact factor: 38.330

9.  A single IGF1 allele is a major determinant of small size in dogs.

Authors:  Nathan B Sutter; Carlos D Bustamante; Kevin Chase; Melissa M Gray; Keyan Zhao; Lan Zhu; Badri Padhukasahasram; Eric Karlins; Sean Davis; Paul G Jones; Pascale Quignon; Gary S Johnson; Heidi G Parker; Neale Fretwell; Dana S Mosher; Dennis F Lawler; Ebenezer Satyaraj; Magnus Nordborg; K Gordon Lark; Robert K Wayne; Elaine A Ostrander
Journal:  Science       Date:  2007-04-06       Impact factor: 47.728

10.  A mutation in the myostatin gene increases muscle mass and enhances racing performance in heterozygote dogs.

Authors:  Dana S Mosher; Pascale Quignon; Carlos D Bustamante; Nathan B Sutter; Cathryn S Mellersh; Heidi G Parker; Elaine A Ostrander
Journal:  PLoS Genet       Date:  2007-04-30       Impact factor: 5.917

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  74 in total

1.  Translating cancer 'omics' to improved outcomes.

Authors:  Emily A Vucic; Kelsie L Thu; Keith Robison; Leszek A Rybaczyk; Raj Chari; Carlos E Alvarez; Wan L Lam
Journal:  Genome Res       Date:  2012-02       Impact factor: 9.043

2.  Selection of internal reference genes for normalization of quantitative reverse transcription polymerase chain reaction (qRT-PCR) analysis in the canine brain and other organs.

Authors:  Sang-Je Park; Jae-Won Huh; Young-Hyun Kim; Sang-Rae Lee; Sang-Hyun Kim; Sun-Uk Kim; Heui-Soo Kim; Min Kyu Kim; Kyu-Tae Chang
Journal:  Mol Biotechnol       Date:  2013-05       Impact factor: 2.695

3.  Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato.

Authors:  Daniel Koenig; José M Jiménez-Gómez; Seisuke Kimura; Daniel Fulop; Daniel H Chitwood; Lauren R Headland; Ravi Kumar; Michael F Covington; Upendra Kumar Devisetty; An V Tat; Takayuki Tohge; Anthony Bolger; Korbinian Schneeberger; Stephan Ossowski; Christa Lanz; Guangyan Xiong; Mallorie Taylor-Teeples; Siobhan M Brady; Markus Pauly; Detlef Weigel; Björn Usadel; Alisdair R Fernie; Jie Peng; Neelima R Sinha; Julin N Maloof
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-26       Impact factor: 11.205

4.  Analysis of the canine brain transcriptome with an emphasis on the hypothalamus and cerebral cortex.

Authors:  Meenakshi Roy; Namshin Kim; Kyung Kim; Won-Hyong Chung; Rujira Achawanantakun; Yanni Sun; Robert Wayne
Journal:  Mamm Genome       Date:  2013-11-08       Impact factor: 2.957

Review 5.  Preclinical models of Wilson's disease, why dogs are catchy alternatives.

Authors:  Hedwig S Kruitwagen; Louis C Penning
Journal:  Ann Transl Med       Date:  2019-04

6.  From caveman companion to medical innovator: genomic insights into the origin and evolution of domestic dogs.

Authors:  Heidi G Parker; Samuel F Gilbert
Journal:  Adv Genomics Genet       Date:  2015-06-12

Review 7.  Animal Models for Stem Cell-Based Pulp Regeneration: Foundation for Human Clinical Applications.

Authors:  Misako Nakashima; Koichiro Iohara; Marco C Bottino; Ashraf F Fouad; Jacques E Nör; George T-J Huang
Journal:  Tissue Eng Part B Rev       Date:  2019-01-09       Impact factor: 6.389

8.  Homologous Mutation to Human BRAF V600E Is Common in Naturally Occurring Canine Bladder Cancer--Evidence for a Relevant Model System and Urine-Based Diagnostic Test.

Authors:  Brennan Decker; Heidi G Parker; Deepika Dhawan; Erika M Kwon; Eric Karlins; Brian W Davis; José A Ramos-Vara; Patty L Bonney; Elizabeth A McNiel; Deborah W Knapp; Elaine A Ostrander
Journal:  Mol Cancer Res       Date:  2015-03-12       Impact factor: 5.852

Review 9.  Domestic dogs and cancer research: a breed-based genomics approach.

Authors:  Brian W Davis; Elaine A Ostrander
Journal:  ILAR J       Date:  2014

10.  The insulin-like growth factor 1 receptor (IGF1R) contributes to reduced size in dogs.

Authors:  Barbara C Hoopes; Maud Rimbault; David Liebers; Elaine A Ostrander; Nathan B Sutter
Journal:  Mamm Genome       Date:  2012-08-18       Impact factor: 2.957

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