Literature DB >> 21045552

N. meningitidis 1681 is a member of the FinO family of RNA chaperones.

Steven Chaulk1, Jun Lu, Kemin Tan, David C Arthur, Ross A Edwards, Laura S Frost, Andrzej Joachimiak, J N Mark Glover.   

Abstract

The conjugative transfer of F-like plasmids between bacteria is regulated by the plasmid-encoded RNA chaperone, FinO, which facilitates sense - antisense RNA interactions to regulate plasmid gene expression. FinO was thought to adopt a unique structure, however many putative homologs have been identified in microbial genomes and are considered members of the FinO_conjugation_repressor superfamily. We were interested in determining whether other members were also able to bind RNA and promote duplex formation, suggesting that this motif does indeed identify a putative RNA chaperone. We determined the crystal structure of the N. meningitidis MC58 protein NMB1681. It revealed striking similarity to FinO, with a conserved fold and a large, positively charged surface that could function in RNA interactions. Using assays developed to study FinO-FinP sRNA interactions, NMB1681, like FinO, bound tightly to FinP RNA stem-loops with short 5' and 3' single-stranded tails but not to ssRNA. It also was able to catalyze strand exchange between an RNA duplex and a complementary single-strand, and facilitated duplexing between complementary RNA hairpins. Finally, NMB1681 was able to rescue a finO deficiency and repress F plasmid conjugation. This study strongly suggests that NMB1681 is a FinO-like RNA chaperone that likely regulates gene expression through RNA-based mechanisms in N. meningitidis.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 21045552      PMCID: PMC3073339          DOI: 10.4161/rna.7.6.13688

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  36 in total

1.  A new vector for high-throughput, ligation-independent cloning encoding a tobacco etch virus protease cleavage site.

Authors:  Lucy Stols; Minyi Gu; Lynda Dieckman; Rosemarie Raffen; Frank R Collart; Mark I Donnelly
Journal:  Protein Expr Purif       Date:  2002-06       Impact factor: 1.650

2.  Characterizing the structural features of RNA/RNA interactions of the F-plasmid FinOP fertility inhibition system.

Authors:  Michael J Gubbins; David C Arthur; Alexandru F Ghetu; J N Mark Glover; Laura S Frost
Journal:  J Biol Chem       Date:  2003-05-14       Impact factor: 5.157

3.  FinO is an RNA chaperone that facilitates sense-antisense RNA interactions.

Authors:  David C Arthur; Alexandru F Ghetu; Michael J Gubbins; Ross A Edwards; Laura S Frost; J N Mark Glover
Journal:  EMBO J       Date:  2003-12-01       Impact factor: 11.598

4.  Substructure solution with SHELXD.

Authors:  Thomas R Schneider; George M Sheldrick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-09-28

5.  Automation of protein purification for structural genomics.

Authors:  Youngchang Kim; Irina Dementieva; Min Zhou; Ruiying Wu; Lour Lezondra; Pearl Quartey; Grazyna Joachimiak; Olga Korolev; Hui Li; Andrzej Joachimiak
Journal:  J Struct Funct Genomics       Date:  2004

Review 6.  The bacterial Sm-like protein Hfq: a key player in RNA transactions.

Authors:  Poul Valentin-Hansen; Maiken Eriksen; Christina Udesen
Journal:  Mol Microbiol       Date:  2004-03       Impact factor: 3.501

7.  HKL-3000: the integration of data reduction and structure solution--from diffraction images to an initial model in minutes.

Authors:  Wladek Minor; Marcin Cymborowski; Zbyszek Otwinowski; Maksymilian Chruszcz
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2006-07-18

8.  Analysis and characterization of the IncFV plasmid pED208 transfer region.

Authors:  Jun Lu; Jan Manchak; William Klimke; Colin Davidson; Neville Firth; Ronald A Skurray; Laura S Frost
Journal:  Plasmid       Date:  2002-07       Impact factor: 3.466

Review 9.  The role of structural disorder in the function of RNA and protein chaperones.

Authors:  Peter Tompa; Peter Csermely
Journal:  FASEB J       Date:  2004-08       Impact factor: 5.191

Review 10.  The small RNA regulators of Escherichia coli: roles and mechanisms*.

Authors:  Susan Gottesman
Journal:  Annu Rev Microbiol       Date:  2004       Impact factor: 16.232

View more
  11 in total

1.  Biological significance of 5S rRNA import into human mitochondria: role of ribosomal protein MRP-L18.

Authors:  Alexandre Smirnov; Nina Entelis; Robert P Martin; Ivan Tarassov
Journal:  Genes Dev       Date:  2011-06-15       Impact factor: 11.361

Review 2.  ProQ/FinO-domain proteins: another ubiquitous family of RNA matchmakers?

Authors:  Mikolaj Olejniczak; Gisela Storz
Journal:  Mol Microbiol       Date:  2017-05-03       Impact factor: 3.501

3.  Determinants of RNA recognition by the FinO domain of the Escherichia coli ProQ protein.

Authors:  Ewa M Stein; Joanna Kwiatkowska; Maciej M Basczok; Chandra M Gravel; Katherine E Berry; Mikołaj Olejniczak
Journal:  Nucleic Acids Res       Date:  2020-07-27       Impact factor: 16.971

Review 4.  RNA-binding proteins involved in post-transcriptional regulation in bacteria.

Authors:  Elke Van Assche; Sandra Van Puyvelde; Jos Vanderleyden; Hans P Steenackers
Journal:  Front Microbiol       Date:  2015-03-03       Impact factor: 5.640

5.  The primary transcriptome of Neisseria meningitidis and its interaction with the RNA chaperone Hfq.

Authors:  Nadja Heidrich; Saskia Bauriedl; Lars Barquist; Lei Li; Christoph Schoen; Jörg Vogel
Journal:  Nucleic Acids Res       Date:  2017-06-02       Impact factor: 16.971

6.  Molecular mechanism of mRNA repression in trans by a ProQ-dependent small RNA.

Authors:  Alexandre Smirnov; Chuan Wang; Lisa L Drewry; Jörg Vogel
Journal:  EMBO J       Date:  2017-03-23       Impact factor: 11.598

7.  The minimal meningococcal ProQ protein has an intrinsic capacity for structure-based global RNA recognition.

Authors:  Saskia Bauriedl; Milan Gerovac; Nadja Heidrich; Thorsten Bischler; Lars Barquist; Jörg Vogel; Christoph Schoen
Journal:  Nat Commun       Date:  2020-06-04       Impact factor: 14.919

8.  Solution structure and RNA-binding of a minimal ProQ-homolog from Legionella pneumophila (Lpp1663).

Authors:  Carina Immer; Carolin Hacker; Jens Wöhnert
Journal:  RNA       Date:  2020-09-28       Impact factor: 4.942

9.  Structure of the Escherichia coli ProQ RNA-binding protein.

Authors:  Grecia M Gonzalez; Steven W Hardwick; Sarah L Maslen; J Mark Skehel; Erik Holmqvist; Jörg Vogel; Alex Bateman; Ben F Luisi; R William Broadhurst
Journal:  RNA       Date:  2017-02-13       Impact factor: 4.942

10.  Genetic identification of the functional surface for RNA binding by Escherichia coli ProQ.

Authors:  Smriti Pandey; Chandra M Gravel; Oliver M Stockert; Clara D Wang; Courtney L Hegner; Hannah LeBlanc; Katherine E Berry
Journal:  Nucleic Acids Res       Date:  2020-05-07       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.